CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 19 | C19C | C5343C | syn | tgC | tgT | 21216 | 21216 | 1 | 16291-16293 |
ORF1ab/nsp13 | 19 | C19del | C5343del | del | TGC | --- | 94 | 94 | 1 | 16291-16293 |
ORF1ab/nsp13 | 19 | C19F | C5343F | nonsyn | tGc | tTc | 14 | 12 | 0.857143 | 16291-16293 |
ORF1ab/nsp13 | 19 | C19F | C5343F | nonsyn | tGC | tTT | 14 | 2 | 0.142857 | 16291-16293 |
ORF1ab/nsp13 | 19 | C19Y | C5343Y | nonsyn | tGc | tAc | 7 | 7 | 1 | 16291-16293 |
ORF1ab/nsp13 | 19 | C19del1 | C5343del1 | del | tgC | tg- | 6 | 5 | 0.833333 | 16291-16293 |
ORF1ab/nsp13 | 19 | C19del1 | C5343del1 | del | Tgc | -gc | 6 | 1 | 0.166667 | 16291-16293 |
ORF1ab/nsp13 | 19 | C19R | C5343R | nonsyn | Tgc | Cgc | 5 | 5 | 1 | 16291-16293 |
ORF1ab/nsp13 | 19 | C19S | C5343S | nonsyn | Tgc | Agc | 5 | 5 | 1 | 16291-16293 |
ORF1ab/nsp13 | 19 | C19X | C5343X | nonsyn | tgC | tgA | 4 | 4 | 1 | 16291-16293 |
ORF1ab/nsp13 | 19 | C19W | C5343W | nonsyn | tgC | tgG | 3 | 3 | 1 | 16291-16293 |
ORF1ab/nsp13 | 19 | C19L | C5343L | nonsyn | tGC | tTA | 3 | 1 | 0.333333 | 16291-16293 |
ORF1ab/nsp13 | 19 | C19L | C5343L | nonsyn | tGC | tTG | 3 | 1 | 0.333333 | 16291-16293 |
ORF1ab/nsp13 | 19 | C19L | C5343L | nonsyn | TGc | CTc | 3 | 1 | 0.333333 | 16291-16293 |
ORF1ab/nsp13 | 19 | C19T | C5343T | nonsyn | TGc | ACc | 2 | 2 | 1 | 16291-16293 |
ORF1ab/nsp13 | 19 | C19K | C5343K | nonsyn | TGC | AAA | 2 | 2 | 1 | 16291-16293 |
ORF1ab/nsp13 | 19 | C19H | C5343H | nonsyn | TGc | CAc | 2 | 1 | 0.5 | 16291-16293 |
ORF1ab/nsp13 | 19 | C19H | C5343H | nonsyn | TGC | CAT | 2 | 1 | 0.5 | 16291-16293 |
ORF1ab/nsp13 | 19 | C19G | C5343G | nonsyn | Tgc | Ggc | 1 | 1 | 1 | 16291-16293 |
ORF1ab/nsp13 | 19 | C19V | C5343V | nonsyn | TGc | GTc | 1 | 1 | 1 | 16291-16293 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 21216 | 21216 | All | 0.004058 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 8324 | 8324 | AY.4 | 0.012956 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 3028 | 3028 | P.1.7 | 0.966794 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2979 | 2979 | B.1.1.7 | 0.002667 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 802 | 802 | AY.42 | 0.032265 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 448 | 448 | A.27 | 0.741722 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 330 | 330 | B.1.617.3 | 0.985075 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 318 | 318 | B.1.617.2 | 0.001197 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 305 | 305 | B.1.1 | 0.005533 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 268 | 268 | AY.119 | 0.009463 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 243 | 243 | AY.70 | 0.050667 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 243 | 243 | B.1.2 | 0.00214 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 220 | 220 | AY.26 | 0.006228 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 215 | 215 | AY.29 | 0.003391 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 179 | 179 | AY.25 | 0.001077 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 176 | 176 | B.1.1.27 | 0.99435 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 168 | 168 | B.1.36.28 | 0.965517 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 158 | 158 | AY.3 | 0.001572 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 139 | 139 | AY.99 | 0.145855 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 134 | 134 | AY.103 | 0.000832 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 134 | 134 | B.1.177 | 0.001764 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 124 | 124 | P.1 | 0.001953 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 114 | 114 | B.1 | 0.001044 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 111 | 111 | AY.43 | 0.000492 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 109 | 109 | B.1.429 | 0.002565 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 107 | 107 | AY.44 | 0.000651 |
ORF1ab/nsp13 | 19 | C19del | TGC | --- | 94 | 94 | All | 0.000018 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 83 | 83 | B.1.1.234 | 1 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 69 | 69 | AY.118 | 0.004323 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 68 | 68 | B.1.177.81 | 0.012874 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 53 | 53 | AY.23 | 0.003697 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 53 | 53 | AY.99.2 | 0.004884 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 48 | 48 | AY.75 | 0.002689 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 48 | 48 | B.1.1.519 | 0.001906 |
ORF1ab/nsp13 | 19 | C19del | TGC | --- | 45 | 45 | B.1.1.7 | 0.00004 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 37 | 37 | B.1.1.216 | 0.032947 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 35 | 35 | A | 0.013545 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 32 | 32 | B.1.160 | 0.000998 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 32 | 32 | P.1.15 | 0.007435 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 29 | 29 | B.1.311 | 0.007963 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 28 | 28 | B.1.631 | 0.094276 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 26 | 26 | B.1.596 | 0.002266 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 25 | 25 | AY.101 | 0.012261 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 25 | 25 | AY.39 | 0.000618 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 25 | 25 | B.1.526 | 0.000588 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 24 | 24 | AY.5 | 0.000496 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 22 | 22 | B.1.221 | 0.001563 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 20 | 20 | AY.47 | 0.000622 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 20 | 20 | B.1.177.10 | 0.017559 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 20 | 20 | B.1.367 | 0.015848 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 20 | 20 | B.1.617.1 | 0.002579 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 20 | 20 | Q.8 | 0.003298 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 19 | 19 | B.1.427 | 0.000959 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 19 | 19 | B.1.609 | 0.009108 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 18 | 18 | AY.33 | 0.001202 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 18 | 18 | B | 0.002301 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 18 | 18 | B.1.234 | 0.002375 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 18 | 18 | C.37 | 0.002089 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 17 | 17 | AY.9.2 | 0.000624 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 16 | 16 | AY.61 | 0.001676 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 16 | 16 | B.1.36 | 0.002334 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 15 | 15 | AY.13 | 0.002415 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 15 | 15 | B.1.177.60 | 0.003277 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 15 | 15 | B.1.351 | 0.000446 |
ORF1ab/nsp13 | 19 | C19F | tGc | tTc | 12 | 14 | All | 0.000002 |
ORF1ab/nsp13 | 19 | C19F | tGC | tTT | 2 | 14 | All | 0 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 14 | 14 | AY.100 | 0.000644 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 14 | 14 | AY.113 | 0.001993 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 14 | 14 | AY.120 | 0.000521 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 14 | 14 | B.1.1.222 | 0.002856 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 13 | 13 | AY.36 | 0.001927 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 13 | 13 | D.2 | 0.000976 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 12 | 12 | AY.4.2 | 0.00026 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 12 | 12 | B.1.1.317 | 0.00494 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 12 | 12 | B.1.177.12 | 0.00182 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 11 | 11 | AY.102 | 0.000292 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 11 | 11 | AY.6 | 0.000452 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 11 | 11 | B.1.621 | 0.000974 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 11 | 11 | P.2 | 0.002053 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 10 | 10 | AY.20 | 0.000389 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 10 | 10 | AY.46 | 0.001041 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 10 | 10 | AY.46.5 | 0.001984 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 10 | 10 | B.1.1.176 | 0.004394 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 10 | 10 | B.1.1.50 | 0.006789 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 10 | 10 | B.1.177.77 | 0.007262 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 9 | 9 | AY.12 | 0.002845 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 9 | 9 | AY.4.5 | 0.000967 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 9 | 9 | B.1.134 | 0.04918 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 9 | 9 | B.1.177.62 | 0.010727 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 9 | 9 | B.1.258 | 0.000599 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 9 | 9 | P.1.16 | 0.003367 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 8 | 8 | AY.106 | 0.002679 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 8 | 8 | B.1.1.28 | 0.00249 |
ORF1ab/nsp13 | 19 | C19del | TGC | --- | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 8 | 8 | B.1.240 | 0.001725 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 8 | 8 | B.1.525 | 0.000905 |
ORF1ab/nsp13 | 19 | C19Y | tGc | tAc | 7 | 7 | All | 0.000001 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 7 | 7 | AY.63 | 0.002708 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 7 | 7 | B.1.1.277 | 0.005311 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 7 | 7 | C.16 | 0.007423 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 7 | 7 | R.1 | 0.00063 |
ORF1ab/nsp13 | 19 | C19del1 | tgC | tg- | 5 | 6 | All | 0.000001 |
ORF1ab/nsp13 | 19 | C19del1 | Tgc | -gc | 1 | 6 | All | 0 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 6 | 6 | AY.116 | 0.001721 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 6 | 6 | AY.117 | 0.000507 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 6 | 6 | AY.121 | 0.000812 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 6 | 6 | B.1.1.210 | 0.034286 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 6 | 6 | B.1.1.33 | 0.002525 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 6 | 6 | B.1.177.86 | 0.001101 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 6 | 6 | B.1.637 | 0.000438 |
ORF1ab/nsp13 | 19 | C19F | tGc | tTc | 3 | 5 | 0.166667 | |
ORF1ab/nsp13 | 19 | C19F | tGC | tTT | 2 | 5 | 0.111111 | |
ORF1ab/nsp13 | 19 | C19R | Tgc | Cgc | 5 | 5 | All | 0.000001 |
ORF1ab/nsp13 | 19 | C19S | Tgc | Agc | 5 | 5 | All | 0.000001 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 5 | 5 | AY.30 | 0.001979 |
ORF1ab/nsp13 | 19 | C19del | TGC | --- | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 5 | 5 | AY.98.1 | 0.000242 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 5 | 5 | AY.99.1 | 0.007764 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 5 | 5 | B.1.1.372 | 0.003444 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 5 | 5 | B.1.160.16 | 0.004647 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 5 | 5 | B.1.177.57 | 0.001405 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 5 | 5 | B.1.177.7 | 0.000824 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 5 | 5 | B.1.214.3 | 0.035714 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 5 | 5 | B.1.582 | 0.002453 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 5 | 5 | B.1.587 | 0.009488 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 5 | 5 | B.1.620 | 0.00473 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp13 | 19 | C19X | tgC | tgA | 4 | 4 | All | 0.000001 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 4 | 4 | AY.110 | 0.000451 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 4 | 4 | AY.120.1 | 0.001284 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 4 | 4 | AY.24 | 0.001724 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 4 | 4 | AY.35 | 0.000932 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp13 | 19 | C19del | TGC | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 4 | 4 | AY.46.6 | 0.000289 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 4 | 4 | B.1.1.101 | 0.04 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 4 | 4 | B.1.1.263 | 0.006231 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 4 | 4 | B.1.1.311 | 0.001433 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 4 | 4 | B.1.1.434 | 0.001394 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 4 | 4 | B.1.590 | 0.018182 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 3 | 3 | A.29 | 0.015957 |
ORF1ab/nsp13 | 19 | C19W | tgC | tgG | 3 | 3 | All | 0.000001 |
ORF1ab/nsp13 | 19 | C19L | TGc | CTc | 1 | 3 | All | 0 |
ORF1ab/nsp13 | 19 | C19L | tGC | tTA | 1 | 3 | All | 0 |
ORF1ab/nsp13 | 19 | C19L | tGC | tTG | 1 | 3 | All | 0 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 3 | 3 | AY.29.1 | 0.000662 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 3 | 3 | AY.38 | 0.001498 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 3 | 3 | AY.77 | 0.003382 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 3 | 3 | AY.86 | 0.00249 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.1.159 | 0.014019 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.1.207 | 0.003546 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.1.279 | 0.003363 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.1.525 | 0.016393 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.177.32 | 0.004049 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.177.44 | 0.001557 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.214.2 | 0.001799 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.349 | 0.002144 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.36.16 | 0.004274 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.383 | 0.027027 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.478 | 0.035294 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.575 | 0.00091 |
ORF1ab/nsp13 | 19 | C19del | TGC | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 3 | 3 | B.1.621.1 | 0.001517 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 3 | 3 | C.36 | 0.002732 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 3 | 3 | P.1.1 | 0.000953 |
ORF1ab/nsp13 | 19 | C19del | TGC | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 19 | C19T | TGc | ACc | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 19 | C19K | TGC | AAA | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 19 | C19L | TGc | CTc | 1 | 2 | 0.055556 | |
ORF1ab/nsp13 | 19 | C19L | tGC | tTG | 1 | 2 | 0.055556 | |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | A.2 | 0.001324 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | A.2.5.1 | 0.009615 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | A.21 | 0.00554 |
ORF1ab/nsp13 | 19 | C19K | TGC | AAA | 2 | 2 | All | 0 |
ORF1ab/nsp13 | 19 | C19T | TGc | ACc | 2 | 2 | All | 0 |
ORF1ab/nsp13 | 19 | C19H | TGc | CAc | 1 | 2 | All | 0 |
ORF1ab/nsp13 | 19 | C19H | TGC | CAT | 1 | 2 | All | 0 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp13 | 19 | C19del | TGC | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | AY.46.1 | 0.002053 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp13 | 19 | C19del1 | tgC | tg- | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp13 | 19 | C19Y | tGc | tAc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp13 | 19 | C19del | TGC | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp13 | 19 | C19del | TGC | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.1.301 | 0.002358 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.1.369 | 0.000892 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.1.528 | 0.009615 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.147 | 0.001512 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.157 | 0.00597 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.177.79 | 0.004684 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.258.4 | 0.006897 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.332 | 0.006993 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.351.3 | 0.001753 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.36.22 | 0.002415 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.409 | 0.001563 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.480 | 0.004975 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | B.1.524 | 0.002813 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | B.3.1 | 0.003317 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | C.11 | 0.021277 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 2 | 2 | P.1.11 | 0.020408 |
ORF1ab/nsp13 | 19 | C19G | Tgc | Ggc | 1 | 1 | 0.055556 | |
ORF1ab/nsp13 | 19 | C19W | tgC | tgG | 1 | 1 | 0.055556 | |
ORF1ab/nsp13 | 19 | C19R | Tgc | Cgc | 1 | 1 | 0.055556 | |
ORF1ab/nsp13 | 19 | C19V | TGc | GTc | 1 | 1 | 0.055556 | |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | A.30 | 0.142857 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp13 | 19 | C19G | Tgc | Ggc | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 19 | C19V | TGc | GTc | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp13 | 19 | C19del | TGC | --- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp13 | 19 | C19del1 | tgC | tg- | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp13 | 19 | C19del | TGC | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 19 | C19S | Tgc | Agc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 19 | C19F | tGc | tTc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 19 | C19Y | tGc | tAc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 19 | C19W | tgC | tgG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp13 | 19 | C19del | TGC | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp13 | 19 | C19del | TGC | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp13 | 19 | C19del | TGC | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp13 | 19 | C19del | TGC | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp13 | 19 | C19S | Tgc | Agc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 19 | C19del1 | tgC | tg- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 19 | C19R | Tgc | Cgc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 19 | C19del1 | tgC | tg- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 19 | C19L | tGC | tTA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 19 | C19Y | tGc | tAc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 19 | C19F | tGc | tTc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 19 | C19R | Tgc | Cgc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 19 | C19Y | tGc | tAc | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp13 | 19 | C19F | tGc | tTc | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.163 | 0.007634 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp13 | 19 | C19del | TGC | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.333 | 0.001076 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.363 | 0.005988 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.437 | 0.010417 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp13 | 19 | C19F | tGc | tTc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp13 | 19 | C19W | tgC | tgG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 19 | C19S | Tgc | Agc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.160.17 | 0.001701 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.160.32 | 0.004292 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.160.33 | 0.004425 |
ORF1ab/nsp13 | 19 | C19S | Tgc | Agc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 19 | C19X | tgC | tgA | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp13 | 19 | C19del | TGC | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp13 | 19 | C19R | Tgc | Cgc | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.177.55 | 0.002331 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp13 | 19 | C19del | TGC | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp13 | 19 | C19del | TGC | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp13 | 19 | C19del | TGC | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp13 | 19 | C19del | TGC | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.199 | 0.004132 |
ORF1ab/nsp13 | 19 | C19del | TGC | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 19 | C19X | tgC | tgA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 19 | C19F | tGc | tTc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp13 | 19 | C19F | tGc | tTc | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp13 | 19 | C19del | TGC | --- | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp13 | 19 | C19del | TGC | --- | 1 | 1 | B.1.258.16 | 0.001637 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.333 | 0.010526 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.348 | 0.018182 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.354 | 0.043478 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp13 | 19 | C19S | Tgc | Agc | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp13 | 19 | C19R | Tgc | Cgc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp13 | 19 | C19H | TGC | CAT | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.402 | 0.009804 |
ORF1ab/nsp13 | 19 | C19del | TGC | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.428.3 | 0.012821 |
ORF1ab/nsp13 | 19 | C19Y | tGc | tAc | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp13 | 19 | C19del | TGC | --- | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.520 | 0.021739 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.547 | 0.02439 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp13 | 19 | C19X | tgC | tgA | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp13 | 19 | C19del | TGC | --- | 1 | 1 | B.1.585 | 0.027778 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp13 | 19 | C19H | TGc | CAc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 19 | C19del | TGC | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 19 | C19F | tGc | tTc | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp13 | 19 | C19del1 | Tgc | -gc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 19 | C19X | tgC | tgA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp13 | 19 | C19Y | tGc | tAc | 1 | 1 | B.23 | 0.002924 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | B.58 | 0.010204 |
ORF1ab/nsp13 | 19 | C19del | TGC | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp13 | 19 | C19F | tGc | tTc | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp13 | 19 | C19F | tGc | tTc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | N.1 | 0.016949 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp13 | 19 | C19del | TGC | --- | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp13 | 19 | C19C | tgC | tgT | 1 | 1 | Z.1 | 0.00289 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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