CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 180

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13180Y180CY5504CnonsyntAttGt3853830.99480516774-16776
ORF1ab/nsp13180Y180CY5504CnonsyntATtGC38520.0051948116774-16776
ORF1ab/nsp13180Y180YY5504YsyntaTtaC261261116774-16776
ORF1ab/nsp13180Y180delY5504deldelTAT---4545116774-16776
ORF1ab/nsp13180Y180HY5504HnonsynTatCat88116774-16776
ORF1ab/nsp13180Y180NY5504NnonsynTatAat44116774-16776
ORF1ab/nsp13180Y180FY5504FnonsyntAttTt33116774-16776
ORF1ab/nsp13180Y180XY5504XnonsyntaTtaA320.66666716774-16776
ORF1ab/nsp13180Y180del1Y5504del1deltaTta-320.66666716774-16776
ORF1ab/nsp13180Y180SY5504SnonsyntAttCt310.33333316774-16776
ORF1ab/nsp13180Y180SY5504SnonsyntATtCA310.33333316774-16776
ORF1ab/nsp13180Y180SY5504SnonsynTAtAGt310.33333316774-16776
ORF1ab/nsp13180Y180XY5504XnonsyntaTtaG310.33333316774-16776
ORF1ab/nsp13180Y180del1Y5504del1delTat-at310.33333316774-16776
ORF1ab/nsp13180Y180PY5504PnonsynTATCCA22116774-16776
ORF1ab/nsp13180Y180del2Y5504del2delTAt--t210.516774-16776
ORF1ab/nsp13180Y180del2Y5504del2delTAT--A210.516774-16776
ORF1ab/nsp13180Y180LY5504LnonsyntATtTG11116774-16776

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13180Y180CtAttGt383385All0.000073
ORF1ab/nsp13180Y180CtATtGC2385All0
ORF1ab/nsp13180Y180YtaTtaC261261All0.00005
ORF1ab/nsp13180Y180CtAttGt205205AY.760.990338
ORF1ab/nsp13180Y180YtaTtaC6363B.1.1770.00083
ORF1ab/nsp13180Y180CtAttGt5455B.1.617.20.000203
ORF1ab/nsp13180Y180CtATtGC155B.1.617.20.000004
ORF1ab/nsp13180Y180YtaTtaC5353B.1.1.4310.854839
ORF1ab/nsp13180Y180YtaTtaC4848AY.1030.000298
ORF1ab/nsp13180Y180delTAT---4545All0.000009
ORF1ab/nsp13180Y180YtaTtaC2222B.10.000202
ORF1ab/nsp13180Y180delTAT---2020B.1.1.70.000018
ORF1ab/nsp13180Y180YtaTtaC1212B.1.1.70.000011
ORF1ab/nsp13180Y180CtAttGt1111AY.30.000109
ORF1ab/nsp13180Y180CtAttGt99AY.46.60.00065
ORF1ab/nsp13180Y180CtAttGt99B.1.1.70.000008
ORF1ab/nsp13180Y180HTatCat88All0.000002
ORF1ab/nsp13180Y180CtAttGt88AY.40.000012
ORF1ab/nsp13180Y180CtAttGt77AY.290.00011
ORF1ab/nsp13180Y180CtAttGt56AY.1030.000031
ORF1ab/nsp13180Y180CtATtGC16AY.1030.000006
ORF1ab/nsp13180Y180CtAttGt66B.10.000055
ORF1ab/nsp13180Y180YtaTtaC55AY.40.000008
ORF1ab/nsp13180Y180CtAttGt55AY.500.003997
ORF1ab/nsp13180Y180YtaTtaC55B.1.10.000091
ORF1ab/nsp13180Y180NTatAat44All0.000001
ORF1ab/nsp13180Y180CtAttGt44AY.1000.000184
ORF1ab/nsp13180Y180CtAttGt44AY.250.000024
ORF1ab/nsp13180Y180YtaTtaC44AY.290.000063
ORF1ab/nsp13180Y180delTAT---44AY.40.000006
ORF1ab/nsp13180Y180CtAttGt44AY.440.000024
ORF1ab/nsp13180Y180YtaTtaC44B.1.617.20.000015
ORF1ab/nsp13180Y180CtAttGt44B.1.6210.000354
ORF1ab/nsp13180Y180CtAttGt330.166667
ORF1ab/nsp13180Y180StATtCA130.055556
ORF1ab/nsp13180Y180StAttCt130.055556
ORF1ab/nsp13180Y180STAtAGt130.055556
ORF1ab/nsp13180Y180FtAttTt33All0.000001
ORF1ab/nsp13180Y180XtaTtaA23All0
ORF1ab/nsp13180Y180del1taTta-23All0
ORF1ab/nsp13180Y180XtaTtaG13All0
ORF1ab/nsp13180Y180STAtAGt13All0
ORF1ab/nsp13180Y180del1Tat-at13All0
ORF1ab/nsp13180Y180StAttCt13All0
ORF1ab/nsp13180Y180StATtCA13All0
ORF1ab/nsp13180Y180CtAttGt33AY.230.000209
ORF1ab/nsp13180Y180CtAttGt33AY.390.000074
ORF1ab/nsp13180Y180CtAttGt33AY.430.000013
ORF1ab/nsp13180Y180YtaTtaC33AY.440.000018
ORF1ab/nsp13180Y180CtAttGt33AY.50.000062
ORF1ab/nsp13180Y180CtAttGt33AY.850.001282
ORF1ab/nsp13180Y180YtaTtaC33B.1.1.3160.002775
ORF1ab/nsp13180Y180CtAttGt33B.1.20.000026
ORF1ab/nsp13180Y180FtAttTt220.111111
ORF1ab/nsp13180Y180XtaTtaA220.111111
ORF1ab/nsp13180Y180PTATCCA220.111111
ORF1ab/nsp13180Y180delTAT---220.111111
ORF1ab/nsp13180Y180PTATCCA22All0
ORF1ab/nsp13180Y180del2TAT--A12All0
ORF1ab/nsp13180Y180del2TAt--t12All0
ORF1ab/nsp13180Y180CtAttGt22AY.1110.000366
ORF1ab/nsp13180Y180YtaTtaC22AY.250.000012
ORF1ab/nsp13180Y180delTAT---22AY.4.50.000215
ORF1ab/nsp13180Y180delTAT---22AY.430.000009
ORF1ab/nsp13180Y180YtaTtaC22AY.430.000009
ORF1ab/nsp13180Y180YtaTtaC22AY.60.000082
ORF1ab/nsp13180Y180CtAttGt22B.1.10.000036
ORF1ab/nsp13180Y180YtaTtaC22B.1.1.1760.000879
ORF1ab/nsp13180Y180HTatCat22B.1.1.70.000002
ORF1ab/nsp13180Y180del1Tat-at12B.1.1.70.000001
ORF1ab/nsp13180Y180del1taTta-12B.1.1.70.000001
ORF1ab/nsp13180Y180delTAT---22B.1.1770.000026
ORF1ab/nsp13180Y180YtaTtaC22B.1.20.000018
ORF1ab/nsp13180Y180YtaTtaC22N.50.003534
ORF1ab/nsp13180Y180YtaTtaC22Q.20.001227
ORF1ab/nsp13180Y180NTatAat110.055556
ORF1ab/nsp13180Y180CtAttGt11A.20.000662
ORF1ab/nsp13180Y180CtAttGt11AE.80.000489
ORF1ab/nsp13180Y180LtATtTG11All0
ORF1ab/nsp13180Y180XtaTtaG11AY.1010.00049
ORF1ab/nsp13180Y180YtaTtaC11AY.1070.000466
ORF1ab/nsp13180Y180CtAttGt11AY.1190.000035
ORF1ab/nsp13180Y180CtAttGt11AY.1200.000037
ORF1ab/nsp13180Y180delTAT---11AY.1200.000037
ORF1ab/nsp13180Y180del2TAT--A11AY.160.00038
ORF1ab/nsp13180Y180CtAttGt11AY.160.00038
ORF1ab/nsp13180Y180YtaTtaC11AY.260.000028
ORF1ab/nsp13180Y180HTatCat11AY.260.000028
ORF1ab/nsp13180Y180CtAttGt11AY.260.000028
ORF1ab/nsp13180Y180YtaTtaC11AY.29.10.000221
ORF1ab/nsp13180Y180HTatCat11AY.300.000396
ORF1ab/nsp13180Y180HTatCat11AY.34.10.00051
ORF1ab/nsp13180Y180CtAttGt11AY.350.000233
ORF1ab/nsp13180Y180YtaTtaC11AY.360.000148
ORF1ab/nsp13180Y180YtaTtaC11AY.390.000025
ORF1ab/nsp13180Y180CtAttGt11AY.39.10.00004
ORF1ab/nsp13180Y180YtaTtaC11AY.39.20.001541
ORF1ab/nsp13180Y180CtAttGt11AY.4.2.10.000149
ORF1ab/nsp13180Y180CtAttGt11AY.450.000122
ORF1ab/nsp13180Y180HTatCat11AY.460.000104
ORF1ab/nsp13180Y180delTAT---11AY.46.20.000635
ORF1ab/nsp13180Y180YtaTtaC11AY.470.000031
ORF1ab/nsp13180Y180YtaTtaC11AY.50.000021
ORF1ab/nsp13180Y180CtAttGt11AY.60.000041
ORF1ab/nsp13180Y180YtaTtaC11AY.610.000105
ORF1ab/nsp13180Y180CtAttGt11AY.640.000595
ORF1ab/nsp13180Y180delTAT---11AY.720.001361
ORF1ab/nsp13180Y180CtAttGt11AY.750.000056
ORF1ab/nsp13180Y180YtaTtaC11AY.790.001211
ORF1ab/nsp13180Y180CtAttGt11AY.90.000068
ORF1ab/nsp13180Y180delTAT---11AY.90.000068
ORF1ab/nsp13180Y180YtaTtaC11AY.9.20.000037
ORF1ab/nsp13180Y180CtAttGt11AY.980.000079
ORF1ab/nsp13180Y180CtAttGt11AY.98.10.000048
ORF1ab/nsp13180Y180del1taTta-11B0.000128
ORF1ab/nsp13180Y180delTAT---11B.10.000009
ORF1ab/nsp13180Y180LtATtTG11B.1.10.000018
ORF1ab/nsp13180Y180CtAttGt11B.1.1.1530.001095
ORF1ab/nsp13180Y180YtaTtaC11B.1.1.1920.002309
ORF1ab/nsp13180Y180CtAttGt11B.1.1.2140.000055
ORF1ab/nsp13180Y180YtaTtaC11B.1.1.2370.005405
ORF1ab/nsp13180Y180CtAttGt11B.1.1.3350.012987
ORF1ab/nsp13180Y180CtAttGt11B.1.1.390.00051
ORF1ab/nsp13180Y180NTatAat11B.1.1.4090.002833
ORF1ab/nsp13180Y180CtAttGt11B.1.1.5190.00004
ORF1ab/nsp13180Y180YtaTtaC11B.1.1.630.000386
ORF1ab/nsp13180Y180del2TAt--t11B.1.1.70.000001
ORF1ab/nsp13180Y180delTAT---11B.1.1.700.000341
ORF1ab/nsp13180Y180CtAttGt11B.1.1.700.000341
ORF1ab/nsp13180Y180YtaTtaC11B.1.1110.001175
ORF1ab/nsp13180Y180YtaTtaC11B.1.1460.004237
ORF1ab/nsp13180Y180NTatAat11B.1.1770.000013
ORF1ab/nsp13180Y180delTAT---11B.1.177.160.000664
ORF1ab/nsp13180Y180delTAT---11B.1.177.170.000821
ORF1ab/nsp13180Y180delTAT---11B.1.177.540.000606
ORF1ab/nsp13180Y180delTAT---11B.1.177.760.002494
ORF1ab/nsp13180Y180delTAT---11B.1.177.830.001481
ORF1ab/nsp13180Y180YtaTtaC11B.1.177.850.005435
ORF1ab/nsp13180Y180NTatAat11B.1.20.000009
ORF1ab/nsp13180Y180FtAttTt11B.1.3060.005714
ORF1ab/nsp13180Y180HTatCat11B.1.3510.00003
ORF1ab/nsp13180Y180YtaTtaC11B.1.3510.00003
ORF1ab/nsp13180Y180YtaTtaC11B.1.36.270.000763
ORF1ab/nsp13180Y180YtaTtaC11B.1.3890.001002
ORF1ab/nsp13180Y180YtaTtaC11B.1.4290.000024
ORF1ab/nsp13180Y180YtaTtaC11B.1.5750.000303
ORF1ab/nsp13180Y180HTatCat11B.1.617.20.000004
ORF1ab/nsp13180Y180YtaTtaC11B.1.6370.000073
ORF1ab/nsp13180Y180delTAT---11B.340.013699
ORF1ab/nsp13180Y180delTAT---11C.170.055556
ORF1ab/nsp13180Y180YtaTtaC11C.370.000116
ORF1ab/nsp13180Y180CtAttGt11P.10.000016
ORF1ab/nsp13180Y180YtaTtaC11P.1.140.000048