CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 176 | L176F | L5500F | nonsyn | Ctt | Ttt | 2319 | 2315 | 0.998275 | 16762-16764 |
ORF1ab/nsp13 | 176 | L176F | L5500F | nonsyn | CtT | TtC | 2319 | 4 | 0.00172488 | 16762-16764 |
ORF1ab/nsp13 | 176 | L176L | L5500L | syn | ctT | ctC | 949 | 932 | 0.982086 | 16762-16764 |
ORF1ab/nsp13 | 176 | L176L | L5500L | syn | ctT | ctA | 949 | 12 | 0.0126449 | 16762-16764 |
ORF1ab/nsp13 | 176 | L176L | L5500L | syn | ctT | ctG | 949 | 5 | 0.0052687 | 16762-16764 |
ORF1ab/nsp13 | 176 | L176del | L5500del | del | CTT | --- | 62 | 62 | 1 | 16762-16764 |
ORF1ab/nsp13 | 176 | L176P | L5500P | nonsyn | cTt | cCt | 23 | 18 | 0.782609 | 16762-16764 |
ORF1ab/nsp13 | 176 | L176P | L5500P | nonsyn | cTT | cCA | 23 | 3 | 0.130435 | 16762-16764 |
ORF1ab/nsp13 | 176 | L176P | L5500P | nonsyn | cTT | cCC | 23 | 1 | 0.0434783 | 16762-16764 |
ORF1ab/nsp13 | 176 | L176P | L5500P | nonsyn | cTT | cCG | 23 | 1 | 0.0434783 | 16762-16764 |
ORF1ab/nsp13 | 176 | L176V | L5500V | nonsyn | Ctt | Gtt | 11 | 11 | 1 | 16762-16764 |
ORF1ab/nsp13 | 176 | L176I | L5500I | nonsyn | Ctt | Att | 10 | 9 | 0.9 | 16762-16764 |
ORF1ab/nsp13 | 176 | L176I | L5500I | nonsyn | CtT | AtC | 10 | 1 | 0.1 | 16762-16764 |
ORF1ab/nsp13 | 176 | L176T | L5500T | nonsyn | CTt | ACt | 9 | 7 | 0.777778 | 16762-16764 |
ORF1ab/nsp13 | 176 | L176T | L5500T | nonsyn | CTT | ACC | 9 | 1 | 0.111111 | 16762-16764 |
ORF1ab/nsp13 | 176 | L176T | L5500T | nonsyn | CTT | ACG | 9 | 1 | 0.111111 | 16762-16764 |
ORF1ab/nsp13 | 176 | L176H | L5500H | nonsyn | cTt | cAt | 8 | 8 | 1 | 16762-16764 |
ORF1ab/nsp13 | 176 | L176del2 | L5500del2 | del | CTt | --t | 4 | 3 | 0.75 | 16762-16764 |
ORF1ab/nsp13 | 176 | L176del2 | L5500del2 | del | cTT | c-- | 4 | 1 | 0.25 | 16762-16764 |
ORF1ab/nsp13 | 176 | L176Y | L5500Y | nonsyn | CTt | TAt | 3 | 3 | 1 | 16762-16764 |
ORF1ab/nsp13 | 176 | L176N | L5500N | nonsyn | CTt | AAt | 2 | 2 | 1 | 16762-16764 |
ORF1ab/nsp13 | 176 | L176del1 | L5500del1 | del | cTt | c-t | 2 | 2 | 1 | 16762-16764 |
ORF1ab/nsp13 | 176 | L176C | L5500C | nonsyn | CTt | TGt | 2 | 2 | 1 | 16762-16764 |
ORF1ab/nsp13 | 176 | L176M | L5500M | nonsyn | CtT | AtG | 1 | 1 | 1 | 16762-16764 |
ORF1ab/nsp13 | 176 | L176Q | L5500Q | nonsyn | cTT | cAA | 1 | 1 | 1 | 16762-16764 |
ORF1ab/nsp13 | 176 | L176R | L5500R | nonsyn | cTT | cGC | 1 | 1 | 1 | 16762-16764 |
ORF1ab/nsp13 | 176 | L176S | L5500S | nonsyn | CTt | TCt | 1 | 1 | 1 | 16762-16764 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 2315 | 2319 | All | 0.000443 |
ORF1ab/nsp13 | 176 | L176F | CtT | TtC | 4 | 2319 | All | 0.000001 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 932 | 949 | All | 0.000178 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctA | 12 | 949 | All | 0.000002 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctG | 5 | 949 | All | 0.000001 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 713 | 713 | B.1.346 | 0.934469 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 499 | 499 | B.1.466.2 | 0.195227 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 185 | 185 | B.1.617.2 | 0.000697 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 183 | 183 | B.1.623 | 0.098176 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 179 | 179 | B.1 | 0.00164 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 85 | 86 | B.1.1.7 | 0.000076 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctA | 1 | 86 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 85 | 85 | B.1.1.7 | 0.000076 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 83 | 83 | AY.43 | 0.000368 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 73 | 73 | B.1.452 | 1 |
ORF1ab/nsp13 | 176 | L176del | CTT | --- | 62 | 62 | All | 0.000012 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 62 | 62 | B.1.569 | 0.898551 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 59 | 59 | AY.102 | 0.001564 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 58 | 58 | AY.4 | 0.00009 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 55 | 55 | AY.4.2 | 0.001193 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 53 | 53 | AY.4 | 0.000082 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 52 | 52 | AY.3 | 0.000517 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 51 | 51 | B.55 | 0.150442 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 44 | 45 | AY.44 | 0.000268 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctG | 1 | 45 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 44 | 44 | B.1.2 | 0.000387 |
ORF1ab/nsp13 | 176 | L176del | CTT | --- | 32 | 32 | B.1.1.7 | 0.000029 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 30 | 30 | AY.25 | 0.00018 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 28 | 28 | AY.4.2 | 0.000607 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 28 | 28 | B.1.637 | 0.002046 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 25 | 25 | AY.3.1 | 0.002131 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 25 | 25 | B.1.1.483 | 0.961538 |
ORF1ab/nsp13 | 176 | L176P | cTt | cCt | 18 | 23 | All | 0.000003 |
ORF1ab/nsp13 | 176 | L176P | cTT | cCA | 3 | 23 | All | 0.000001 |
ORF1ab/nsp13 | 176 | L176P | cTT | cCG | 1 | 23 | All | 0 |
ORF1ab/nsp13 | 176 | L176P | cTT | cCC | 1 | 23 | All | 0 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 23 | 23 | B.1.1 | 0.000417 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 22 | 22 | B.1.1.311 | 0.00788 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 22 | 22 | B.1.208 | 0.88 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 19 | 19 | P.1 | 0.000299 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 17 | 18 | AY.44 | 0.000103 |
ORF1ab/nsp13 | 176 | L176F | CtT | TtC | 1 | 18 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 18 | 18 | P.1.14 | 0.00086 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 15 | 17 | AY.103 | 0.000093 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctA | 2 | 17 | AY.103 | 0.000012 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 17 | 17 | B.1.617.2 | 0.000064 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 16 | 16 | B.1.438.1 | 0.001716 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 15 | 15 | B.1.1.33 | 0.006313 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 15 | 15 | D.4 | 1 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 13 | 13 | AY.29 | 0.000205 |
ORF1ab/nsp13 | 176 | L176V | Ctt | Gtt | 11 | 11 | All | 0.000002 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 11 | 11 | AY.103 | 0.000068 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 11 | 11 | B.1.595 | 0.002871 |
ORF1ab/nsp13 | 176 | L176I | Ctt | Att | 9 | 10 | All | 0.000002 |
ORF1ab/nsp13 | 176 | L176I | CtT | AtC | 1 | 10 | All | 0 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 10 | 10 | B.1.1.51 | 0.017182 |
ORF1ab/nsp13 | 176 | L176T | CTt | ACt | 7 | 9 | All | 0.000001 |
ORF1ab/nsp13 | 176 | L176T | CTT | ACG | 1 | 9 | All | 0 |
ORF1ab/nsp13 | 176 | L176T | CTT | ACC | 1 | 9 | All | 0 |
ORF1ab/nsp13 | 176 | L176H | cTt | cAt | 8 | 8 | All | 0.000002 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 8 | 8 | AY.119 | 0.000282 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 8 | 8 | AY.26 | 0.000226 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 8 | 8 | AY.4.1 | 0.0059 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 8 | 8 | B.1.243 | 0.000557 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp13 | 176 | L176P | cTt | cCt | 3 | 6 | 0.166667 | |
ORF1ab/nsp13 | 176 | L176P | cTT | cCA | 2 | 6 | 0.111111 | |
ORF1ab/nsp13 | 176 | L176P | cTT | cCC | 1 | 6 | 0.055556 | |
ORF1ab/nsp13 | 176 | L176P | cTt | cCt | 5 | 6 | B.1 | 0.000046 |
ORF1ab/nsp13 | 176 | L176P | cTT | cCA | 1 | 6 | B.1 | 0.000009 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 6 | 6 | B.1.621 | 0.000531 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 5 | 5 | AY.1 | 0.001979 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 4 | 5 | AY.43 | 0.000018 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctA | 1 | 5 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 5 | 5 | B.1.561 | 0.001985 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 5 | 5 | B.1.617.1 | 0.000645 |
ORF1ab/nsp13 | 176 | L176I | Ctt | Att | 3 | 4 | 0.166667 | |
ORF1ab/nsp13 | 176 | L176I | CtT | AtC | 1 | 4 | 0.055556 | |
ORF1ab/nsp13 | 176 | L176del2 | CTt | --t | 3 | 4 | All | 0.000001 |
ORF1ab/nsp13 | 176 | L176del2 | cTT | c-- | 1 | 4 | All | 0 |
ORF1ab/nsp13 | 176 | L176V | Ctt | Gtt | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 3 | 4 | AY.25 | 0.000018 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctA | 1 | 4 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp13 | 176 | L176del | CTT | --- | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp13 | 176 | L176I | Ctt | Att | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 2 | 4 | B.1 | 0.000018 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctA | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctG | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp13 | 176 | L176P | cTt | cCt | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp13 | 176 | L176del | CTT | --- | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 4 | 4 | B.1.181 | 0.078431 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 4 | 4 | B.1.469 | 0.01444 |
ORF1ab/nsp13 | 176 | L176V | Ctt | Gtt | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 4 | 4 | B.1.621.1 | 0.002023 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 3 | 3 | 0.166667 | |
ORF1ab/nsp13 | 176 | L176Y | CTt | TAt | 3 | 3 | 0.166667 | |
ORF1ab/nsp13 | 176 | L176T | CTt | ACt | 2 | 3 | 0.111111 | |
ORF1ab/nsp13 | 176 | L176T | CTT | ACC | 1 | 3 | 0.055556 | |
ORF1ab/nsp13 | 176 | L176Y | CTt | TAt | 3 | 3 | All | 0.000001 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 3 | 3 | AY.12 | 0.000948 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 3 | 3 | AY.70 | 0.000626 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp13 | 176 | L176T | CTt | ACt | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp13 | 176 | L176P | cTt | cCt | 2 | 3 | B.1.221 | 0.000142 |
ORF1ab/nsp13 | 176 | L176P | cTT | cCG | 1 | 3 | B.1.221 | 0.000071 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 3 | 3 | B.1.324 | 0.004815 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 3 | 3 | B.1.351.5 | 0.001799 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp13 | 176 | L176F | CtT | TtC | 2 | 3 | B.1.466.2 | 0.000782 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 3 | B.1.466.2 | 0.000391 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 3 | 3 | B.1.518 | 0.035294 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctA | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 3 | 3 | B.1.564 | 0.001278 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 3 | 3 | B.1.613 | 0.081081 |
ORF1ab/nsp13 | 176 | L176H | cTt | cAt | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 176 | L176C | CTt | TGt | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 2 | 2 | A | 0.000774 |
ORF1ab/nsp13 | 176 | L176N | CTt | AAt | 2 | 2 | All | 0 |
ORF1ab/nsp13 | 176 | L176del1 | cTt | c-t | 2 | 2 | All | 0 |
ORF1ab/nsp13 | 176 | L176C | CTt | TGt | 2 | 2 | All | 0 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 2 | 2 | AY.120.2.1 | 0.000997 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp13 | 176 | L176del | CTT | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp13 | 176 | L176del | CTT | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 2 | 2 | AY.90 | 0.001369 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 2 | 2 | B.1.1.135 | 0.00939 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctG | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 2 | 2 | B.1.1.48 | 0.005747 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 1 | 2 | B.1.1.519 | 0.00004 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctA | 1 | 2 | B.1.1.519 | 0.00004 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 2 | 2 | B.1.1.526 | 0.007092 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 2 | 2 | B.1.177.83 | 0.002963 |
ORF1ab/nsp13 | 176 | L176V | Ctt | Gtt | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp13 | 176 | L176T | CTT | ACG | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp13 | 176 | L176T | CTt | ACt | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctA | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 2 | 2 | B.1.462 | 0.014493 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp13 | 176 | L176N | CTt | AAt | 1 | 1 | 0.055556 | |
ORF1ab/nsp13 | 176 | L176S | CTt | TCt | 1 | 1 | 0.055556 | |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 1 | 1 | 0.055556 | |
ORF1ab/nsp13 | 176 | L176del | CTT | --- | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp13 | 176 | L176Q | cTT | cAA | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 176 | L176R | cTT | cGC | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 176 | L176S | CTt | TCt | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 176 | L176M | CtT | AtG | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp13 | 176 | L176del | CTT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp13 | 176 | L176del | CTT | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp13 | 176 | L176del | CTT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 176 | L176F | CtT | TtC | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp13 | 176 | L176del | CTT | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp13 | 176 | L176del | CTT | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp13 | 176 | L176H | cTt | cAt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 176 | L176Q | cTT | cAA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 176 | L176del1 | cTt | c-t | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 176 | L176del | CTT | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 176 | L176del2 | CTt | --t | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 176 | L176N | CTt | AAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 176 | L176P | cTt | cCt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 176 | L176T | CTt | ACt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 176 | L176I | Ctt | Att | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 176 | L176H | cTt | cAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp13 | 176 | L176H | cTt | cAt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.1.406 | 0.006494 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.1.426 | 0.035714 |
ORF1ab/nsp13 | 176 | L176P | cTt | cCt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp13 | 176 | L176del2 | cTT | c-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 176 | L176H | cTt | cAt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 176 | L176del | CTT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp13 | 176 | L176del | CTT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp13 | 176 | L176del | CTT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp13 | 176 | L176del | CTT | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp13 | 176 | L176del | CTT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp13 | 176 | L176del | CTT | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp13 | 176 | L176del | CTT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp13 | 176 | L176H | cTt | cAt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp13 | 176 | L176I | Ctt | Att | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctG | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp13 | 176 | L176M | CtT | AtG | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp13 | 176 | L176del | CTT | --- | 1 | 1 | B.1.242 | 0.018868 |
ORF1ab/nsp13 | 176 | L176P | cTt | cCt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp13 | 176 | L176del | CTT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 1 | 1 | B.1.270 | 0.005618 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.321 | 0.034483 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp13 | 176 | L176H | cTt | cAt | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.395 | 0.007042 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.448 | 0.002625 |
ORF1ab/nsp13 | 176 | L176R | cTT | cGC | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 1 | 1 | B.1.547 | 0.02439 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp13 | 176 | L176del2 | CTt | --t | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 176 | L176del1 | cTt | c-t | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 176 | L176P | cTt | cCt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp13 | 176 | L176del | CTT | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp13 | 176 | L176del | CTT | --- | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp13 | 176 | L176V | Ctt | Gtt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp13 | 176 | L176L | ctT | ctC | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp13 | 176 | L176del2 | CTt | --t | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp13 | 176 | L176F | Ctt | Ttt | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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