CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 176

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13176L176FL5500FnonsynCttTtt231923150.99827516762-16764
ORF1ab/nsp13176L176FL5500FnonsynCtTTtC231940.0017248816762-16764
ORF1ab/nsp13176L176LL5500LsynctTctC9499320.98208616762-16764
ORF1ab/nsp13176L176LL5500LsynctTctA949120.012644916762-16764
ORF1ab/nsp13176L176LL5500LsynctTctG94950.005268716762-16764
ORF1ab/nsp13176L176delL5500deldelCTT---6262116762-16764
ORF1ab/nsp13176L176PL5500PnonsyncTtcCt23180.78260916762-16764
ORF1ab/nsp13176L176PL5500PnonsyncTTcCA2330.13043516762-16764
ORF1ab/nsp13176L176PL5500PnonsyncTTcCC2310.043478316762-16764
ORF1ab/nsp13176L176PL5500PnonsyncTTcCG2310.043478316762-16764
ORF1ab/nsp13176L176VL5500VnonsynCttGtt1111116762-16764
ORF1ab/nsp13176L176IL5500InonsynCttAtt1090.916762-16764
ORF1ab/nsp13176L176IL5500InonsynCtTAtC1010.116762-16764
ORF1ab/nsp13176L176TL5500TnonsynCTtACt970.77777816762-16764
ORF1ab/nsp13176L176TL5500TnonsynCTTACC910.11111116762-16764
ORF1ab/nsp13176L176TL5500TnonsynCTTACG910.11111116762-16764
ORF1ab/nsp13176L176HL5500HnonsyncTtcAt88116762-16764
ORF1ab/nsp13176L176del2L5500del2delCTt--t430.7516762-16764
ORF1ab/nsp13176L176del2L5500del2delcTTc--410.2516762-16764
ORF1ab/nsp13176L176YL5500YnonsynCTtTAt33116762-16764
ORF1ab/nsp13176L176NL5500NnonsynCTtAAt22116762-16764
ORF1ab/nsp13176L176del1L5500del1delcTtc-t22116762-16764
ORF1ab/nsp13176L176CL5500CnonsynCTtTGt22116762-16764
ORF1ab/nsp13176L176ML5500MnonsynCtTAtG11116762-16764
ORF1ab/nsp13176L176QL5500QnonsyncTTcAA11116762-16764
ORF1ab/nsp13176L176RL5500RnonsyncTTcGC11116762-16764
ORF1ab/nsp13176L176SL5500SnonsynCTtTCt11116762-16764

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13176L176FCttTtt23152319All0.000443
ORF1ab/nsp13176L176FCtTTtC42319All0.000001
ORF1ab/nsp13176L176LctTctC932949All0.000178
ORF1ab/nsp13176L176LctTctA12949All0.000002
ORF1ab/nsp13176L176LctTctG5949All0.000001
ORF1ab/nsp13176L176FCttTtt713713B.1.3460.934469
ORF1ab/nsp13176L176LctTctC499499B.1.466.20.195227
ORF1ab/nsp13176L176FCttTtt185185B.1.617.20.000697
ORF1ab/nsp13176L176FCttTtt183183B.1.6230.098176
ORF1ab/nsp13176L176FCttTtt179179B.10.00164
ORF1ab/nsp13176L176LctTctC8586B.1.1.70.000076
ORF1ab/nsp13176L176LctTctA186B.1.1.70.000001
ORF1ab/nsp13176L176FCttTtt8585B.1.1.70.000076
ORF1ab/nsp13176L176FCttTtt8383AY.430.000368
ORF1ab/nsp13176L176FCttTtt7373B.1.4521
ORF1ab/nsp13176L176delCTT---6262All0.000012
ORF1ab/nsp13176L176FCttTtt6262B.1.5690.898551
ORF1ab/nsp13176L176FCttTtt5959AY.1020.001564
ORF1ab/nsp13176L176LctTctC5858AY.40.00009
ORF1ab/nsp13176L176LctTctC5555AY.4.20.001193
ORF1ab/nsp13176L176FCttTtt5353AY.40.000082
ORF1ab/nsp13176L176FCttTtt5252AY.30.000517
ORF1ab/nsp13176L176FCttTtt5151B.550.150442
ORF1ab/nsp13176L176LctTctC4445AY.440.000268
ORF1ab/nsp13176L176LctTctG145AY.440.000006
ORF1ab/nsp13176L176FCttTtt4444B.1.20.000387
ORF1ab/nsp13176L176delCTT---3232B.1.1.70.000029
ORF1ab/nsp13176L176FCttTtt3030AY.250.00018
ORF1ab/nsp13176L176FCttTtt2828AY.4.20.000607
ORF1ab/nsp13176L176FCttTtt2828B.1.6370.002046
ORF1ab/nsp13176L176LctTctC2525AY.3.10.002131
ORF1ab/nsp13176L176FCttTtt2525B.1.1.4830.961538
ORF1ab/nsp13176L176PcTtcCt1823All0.000003
ORF1ab/nsp13176L176PcTTcCA323All0.000001
ORF1ab/nsp13176L176PcTTcCG123All0
ORF1ab/nsp13176L176PcTTcCC123All0
ORF1ab/nsp13176L176FCttTtt2323B.1.10.000417
ORF1ab/nsp13176L176LctTctC2222B.1.1.3110.00788
ORF1ab/nsp13176L176FCttTtt2222B.1.2080.88
ORF1ab/nsp13176L176FCttTtt1919P.10.000299
ORF1ab/nsp13176L176FCttTtt1718AY.440.000103
ORF1ab/nsp13176L176FCtTTtC118AY.440.000006
ORF1ab/nsp13176L176FCttTtt1818P.1.140.00086
ORF1ab/nsp13176L176LctTctC1517AY.1030.000093
ORF1ab/nsp13176L176LctTctA217AY.1030.000012
ORF1ab/nsp13176L176LctTctC1717B.1.617.20.000064
ORF1ab/nsp13176L176FCttTtt1616B.1.438.10.001716
ORF1ab/nsp13176L176LctTctC1515B.1.1.330.006313
ORF1ab/nsp13176L176FCttTtt1515D.41
ORF1ab/nsp13176L176FCttTtt1313AY.290.000205
ORF1ab/nsp13176L176VCttGtt1111All0.000002
ORF1ab/nsp13176L176FCttTtt1111AY.1030.000068
ORF1ab/nsp13176L176FCttTtt1111B.1.5950.002871
ORF1ab/nsp13176L176ICttAtt910All0.000002
ORF1ab/nsp13176L176ICtTAtC110All0
ORF1ab/nsp13176L176LctTctC1010B.1.1.510.017182
ORF1ab/nsp13176L176TCTtACt79All0.000001
ORF1ab/nsp13176L176TCTTACG19All0
ORF1ab/nsp13176L176TCTTACC19All0
ORF1ab/nsp13176L176HcTtcAt88All0.000002
ORF1ab/nsp13176L176FCttTtt88AY.1190.000282
ORF1ab/nsp13176L176FCttTtt88AY.260.000226
ORF1ab/nsp13176L176FCttTtt88AY.4.10.0059
ORF1ab/nsp13176L176FCttTtt88B.1.2430.000557
ORF1ab/nsp13176L176LctTctC77B.1.20.000062
ORF1ab/nsp13176L176LctTctC77B.1.4290.000165
ORF1ab/nsp13176L176LctTctC77P.10.00011
ORF1ab/nsp13176L176PcTtcCt360.166667
ORF1ab/nsp13176L176PcTTcCA260.111111
ORF1ab/nsp13176L176PcTTcCC160.055556
ORF1ab/nsp13176L176PcTtcCt56B.10.000046
ORF1ab/nsp13176L176PcTTcCA16B.10.000009
ORF1ab/nsp13176L176FCttTtt66B.1.6210.000531
ORF1ab/nsp13176L176FCttTtt55AY.10.001979
ORF1ab/nsp13176L176FCttTtt55AY.390.000124
ORF1ab/nsp13176L176LctTctC45AY.430.000018
ORF1ab/nsp13176L176LctTctA15AY.430.000004
ORF1ab/nsp13176L176FCttTtt55B.1.3510.000149
ORF1ab/nsp13176L176FCttTtt55B.1.5610.001985
ORF1ab/nsp13176L176FCttTtt55B.1.617.10.000645
ORF1ab/nsp13176L176ICttAtt340.166667
ORF1ab/nsp13176L176ICtTAtC140.055556
ORF1ab/nsp13176L176del2CTt--t34All0.000001
ORF1ab/nsp13176L176del2cTTc--14All0
ORF1ab/nsp13176L176VCttGtt44AY.1030.000025
ORF1ab/nsp13176L176LctTctC34AY.250.000018
ORF1ab/nsp13176L176LctTctA14AY.250.000006
ORF1ab/nsp13176L176FCttTtt44AY.39.10.000158
ORF1ab/nsp13176L176delCTT---44AY.40.000006
ORF1ab/nsp13176L176FCttTtt44AY.90.00027
ORF1ab/nsp13176L176FCttTtt44AY.9.10.000335
ORF1ab/nsp13176L176ICttAtt44B.10.000037
ORF1ab/nsp13176L176LctTctC24B.10.000018
ORF1ab/nsp13176L176LctTctA14B.10.000009
ORF1ab/nsp13176L176LctTctG14B.10.000009
ORF1ab/nsp13176L176FCttTtt44B.1.1.5190.000159
ORF1ab/nsp13176L176PcTtcCt44B.1.1.70.000004
ORF1ab/nsp13176L176delCTT---44B.1.1770.000053
ORF1ab/nsp13176L176FCttTtt44B.1.1810.078431
ORF1ab/nsp13176L176LctTctC44B.1.4690.01444
ORF1ab/nsp13176L176VCttGtt44B.1.617.20.000015
ORF1ab/nsp13176L176FCttTtt44B.1.621.10.002023
ORF1ab/nsp13176L176FCttTtt330.166667
ORF1ab/nsp13176L176YCTtTAt330.166667
ORF1ab/nsp13176L176TCTtACt230.111111
ORF1ab/nsp13176L176TCTTACC130.055556
ORF1ab/nsp13176L176YCTtTAt33All0.000001
ORF1ab/nsp13176L176FCttTtt33AY.120.000948
ORF1ab/nsp13176L176FCttTtt33AY.200.000117
ORF1ab/nsp13176L176FCttTtt33AY.470.000093
ORF1ab/nsp13176L176FCttTtt33AY.50.000062
ORF1ab/nsp13176L176FCttTtt33AY.610.000314
ORF1ab/nsp13176L176FCttTtt33AY.700.000626
ORF1ab/nsp13176L176LctTctC33AY.98.10.000145
ORF1ab/nsp13176L176FCttTtt33AY.99.20.000276
ORF1ab/nsp13176L176TCTtACt33B.10.000027
ORF1ab/nsp13176L176FCttTtt33B.1.1.10.00098
ORF1ab/nsp13176L176FCttTtt33B.1.1770.00004
ORF1ab/nsp13176L176FCttTtt33B.1.2210.000213
ORF1ab/nsp13176L176PcTtcCt23B.1.2210.000142
ORF1ab/nsp13176L176PcTTcCG13B.1.2210.000071
ORF1ab/nsp13176L176FCttTtt33B.1.3240.004815
ORF1ab/nsp13176L176LctTctC33B.1.351.50.001799
ORF1ab/nsp13176L176FCttTtt33B.1.360.000438
ORF1ab/nsp13176L176FCttTtt33B.1.4270.000151
ORF1ab/nsp13176L176FCtTTtC23B.1.466.20.000782
ORF1ab/nsp13176L176FCttTtt13B.1.466.20.000391
ORF1ab/nsp13176L176FCttTtt33B.1.5180.035294
ORF1ab/nsp13176L176LctTctA33B.1.5260.000071
ORF1ab/nsp13176L176FCttTtt33B.1.5640.001278
ORF1ab/nsp13176L176FCttTtt33B.1.6130.081081
ORF1ab/nsp13176L176HcTtcAt220.111111
ORF1ab/nsp13176L176CCTtTGt220.111111
ORF1ab/nsp13176L176LctTctC22A0.000774
ORF1ab/nsp13176L176NCTtAAt22All0
ORF1ab/nsp13176L176del1cTtc-t22All0
ORF1ab/nsp13176L176CCTtTGt22All0
ORF1ab/nsp13176L176FCttTtt22AY.120.2.10.000997
ORF1ab/nsp13176L176LctTctC22AY.230.000139
ORF1ab/nsp13176L176LctTctC22AY.260.000057
ORF1ab/nsp13176L176LctTctC22AY.390.000049
ORF1ab/nsp13176L176delCTT---22AY.4.50.000215
ORF1ab/nsp13176L176delCTT---22AY.430.000009
ORF1ab/nsp13176L176LctTctC22AY.46.50.000397
ORF1ab/nsp13176L176FCttTtt22AY.5.40.000553
ORF1ab/nsp13176L176FCttTtt22AY.70.000392
ORF1ab/nsp13176L176FCttTtt22AY.750.000112
ORF1ab/nsp13176L176FCttTtt22AY.900.001369
ORF1ab/nsp13176L176LctTctC22B.1.1.1350.00939
ORF1ab/nsp13176L176FCttTtt22B.1.1.3060.000877
ORF1ab/nsp13176L176LctTctG22B.1.1.3060.000877
ORF1ab/nsp13176L176FCttTtt22B.1.1.480.005747
ORF1ab/nsp13176L176LctTctC12B.1.1.5190.00004
ORF1ab/nsp13176L176LctTctA12B.1.1.5190.00004
ORF1ab/nsp13176L176LctTctC22B.1.1.5260.007092
ORF1ab/nsp13176L176FCttTtt22B.1.1600.000062
ORF1ab/nsp13176L176FCttTtt22B.1.177.830.002963
ORF1ab/nsp13176L176VCttGtt22B.1.20.000018
ORF1ab/nsp13176L176TCTTACG12B.1.2210.000071
ORF1ab/nsp13176L176TCTtACt12B.1.2210.000071
ORF1ab/nsp13176L176LctTctA22B.1.2430.000139
ORF1ab/nsp13176L176FCttTtt22B.1.36.290.001035
ORF1ab/nsp13176L176LctTctC22B.1.4270.000101
ORF1ab/nsp13176L176LctTctC22B.1.4620.014493
ORF1ab/nsp13176L176FCttTtt22B.1.4990.002101
ORF1ab/nsp13176L176FCttTtt22B.1.5260.000047
ORF1ab/nsp13176L176FCttTtt22B.1.5960.000174
ORF1ab/nsp13176L176FCttTtt22D.20.00015
ORF1ab/nsp13176L176NCTtAAt110.055556
ORF1ab/nsp13176L176SCTtTCt110.055556
ORF1ab/nsp13176L176LctTctC110.055556
ORF1ab/nsp13176L176delCTT---11A.23.10.000704
ORF1ab/nsp13176L176FCttTtt11AD.20.000219
ORF1ab/nsp13176L176QcTTcAA11All0
ORF1ab/nsp13176L176RcTTcGC11All0
ORF1ab/nsp13176L176SCTtTCt11All0
ORF1ab/nsp13176L176MCtTAtG11All0
ORF1ab/nsp13176L176FCttTtt11AY.1000.000046
ORF1ab/nsp13176L176LctTctC11AY.1020.000027
ORF1ab/nsp13176L176LctTctC11AY.1110.000183
ORF1ab/nsp13176L176FCttTtt11AY.1180.000063
ORF1ab/nsp13176L176delCTT---11AY.1200.000037
ORF1ab/nsp13176L176FCttTtt11AY.1210.000135
ORF1ab/nsp13176L176LctTctC11AY.1210.000135
ORF1ab/nsp13176L176FCttTtt11AY.140.000088
ORF1ab/nsp13176L176LctTctC11AY.200.000039
ORF1ab/nsp13176L176FCttTtt11AY.230.00007
ORF1ab/nsp13176L176LctTctC11AY.30.00001
ORF1ab/nsp13176L176LctTctC11AY.330.000067
ORF1ab/nsp13176L176FCttTtt11AY.340.000097
ORF1ab/nsp13176L176LctTctC11AY.380.000499
ORF1ab/nsp13176L176FCttTtt11AY.4.40.000409
ORF1ab/nsp13176L176LctTctC11AY.4.50.000107
ORF1ab/nsp13176L176FCttTtt11AY.420.00004
ORF1ab/nsp13176L176LctTctC11AY.450.000122
ORF1ab/nsp13176L176FCttTtt11AY.460.000104
ORF1ab/nsp13176L176LctTctC11AY.460.000104
ORF1ab/nsp13176L176delCTT---11AY.46.20.000635
ORF1ab/nsp13176L176FCttTtt11AY.46.20.000635
ORF1ab/nsp13176L176FCttTtt11AY.510.000909
ORF1ab/nsp13176L176LctTctC11AY.690.000187
ORF1ab/nsp13176L176LctTctC11AY.720.001361
ORF1ab/nsp13176L176delCTT---11AY.750.000056
ORF1ab/nsp13176L176FCtTTtC11AY.75.10.00018
ORF1ab/nsp13176L176delCTT---11AY.90.000068
ORF1ab/nsp13176L176FCttTtt11AY.920.000287
ORF1ab/nsp13176L176FCttTtt11AY.940.000443
ORF1ab/nsp13176L176FCttTtt11AY.960.002075
ORF1ab/nsp13176L176delCTT---11AZ.20.000821
ORF1ab/nsp13176L176FCttTtt11B0.000128
ORF1ab/nsp13176L176HcTtcAt11B.10.000009
ORF1ab/nsp13176L176QcTTcAA11B.10.000009
ORF1ab/nsp13176L176del1cTtc-t11B.10.000009
ORF1ab/nsp13176L176delCTT---11B.10.000009
ORF1ab/nsp13176L176del2CTt--t11B.1.10.000018
ORF1ab/nsp13176L176NCTtAAt11B.1.10.000018
ORF1ab/nsp13176L176PcTtcCt11B.1.10.000018
ORF1ab/nsp13176L176TCTtACt11B.1.10.000018
ORF1ab/nsp13176L176ICttAtt11B.1.10.000018
ORF1ab/nsp13176L176HcTtcAt11B.1.10.000018
ORF1ab/nsp13176L176LctTctC11B.1.10.000018
ORF1ab/nsp13176L176FCttTtt11B.1.1.2140.000055
ORF1ab/nsp13176L176FCttTtt11B.1.1.2200.001859
ORF1ab/nsp13176L176LctTctC11B.1.1.250.000569
ORF1ab/nsp13176L176FCttTtt11B.1.1.2690.001353
ORF1ab/nsp13176L176FCttTtt11B.1.1.3010.001179
ORF1ab/nsp13176L176HcTtcAt11B.1.1.3060.000438
ORF1ab/nsp13176L176FCttTtt11B.1.1.3260.001761
ORF1ab/nsp13176L176FCttTtt11B.1.1.4060.006494
ORF1ab/nsp13176L176FCttTtt11B.1.1.4260.035714
ORF1ab/nsp13176L176PcTtcCt11B.1.1.630.000386
ORF1ab/nsp13176L176del2cTTc--11B.1.1.70.000001
ORF1ab/nsp13176L176HcTtcAt11B.1.1.70.000001
ORF1ab/nsp13176L176delCTT---11B.1.1.700.000341
ORF1ab/nsp13176L176LctTctC11B.1.1770.000013
ORF1ab/nsp13176L176FCttTtt11B.1.177.160.000664
ORF1ab/nsp13176L176delCTT---11B.1.177.160.000664
ORF1ab/nsp13176L176delCTT---11B.1.177.170.000821
ORF1ab/nsp13176L176delCTT---11B.1.177.180.00116
ORF1ab/nsp13176L176delCTT---11B.1.177.540.000606
ORF1ab/nsp13176L176FCttTtt11B.1.177.620.001192
ORF1ab/nsp13176L176delCTT---11B.1.177.760.002494
ORF1ab/nsp13176L176FCttTtt11B.1.177.810.000189
ORF1ab/nsp13176L176delCTT---11B.1.177.830.001481
ORF1ab/nsp13176L176HcTtcAt11B.1.20.000009
ORF1ab/nsp13176L176FCttTtt11B.1.2100.002132
ORF1ab/nsp13176L176ICttAtt11B.1.2210.000071
ORF1ab/nsp13176L176LctTctG11B.1.2210.000071
ORF1ab/nsp13176L176MCtTAtG11B.1.2210.000071
ORF1ab/nsp13176L176LctTctC11B.1.2220.001692
ORF1ab/nsp13176L176FCttTtt11B.1.2340.000132
ORF1ab/nsp13176L176FCttTtt11B.1.2410.000812
ORF1ab/nsp13176L176delCTT---11B.1.2420.018868
ORF1ab/nsp13176L176PcTtcCt11B.1.2430.00007
ORF1ab/nsp13176L176delCTT---11B.1.2580.000067
ORF1ab/nsp13176L176LctTctC11B.1.2700.005618
ORF1ab/nsp13176L176FCttTtt11B.1.3110.000275
ORF1ab/nsp13176L176FCttTtt11B.1.3210.034483
ORF1ab/nsp13176L176LctTctC11B.1.3510.00003
ORF1ab/nsp13176L176FCttTtt11B.1.36.160.001425
ORF1ab/nsp13176L176LctTctC11B.1.36.290.000517
ORF1ab/nsp13176L176FCttTtt11B.1.36.380.001642
ORF1ab/nsp13176L176HcTtcAt11B.1.36.80.001
ORF1ab/nsp13176L176LctTctC11B.1.3750.00082
ORF1ab/nsp13176L176FCttTtt11B.1.3950.007042
ORF1ab/nsp13176L176FCttTtt11B.1.4280.00102
ORF1ab/nsp13176L176FCttTtt11B.1.4290.000024
ORF1ab/nsp13176L176FCttTtt11B.1.4410.009615
ORF1ab/nsp13176L176FCttTtt11B.1.4480.002625
ORF1ab/nsp13176L176RcTTcGC11B.1.4970.000315
ORF1ab/nsp13176L176FCttTtt11B.1.5250.000113
ORF1ab/nsp13176L176LctTctC11B.1.5470.02439
ORF1ab/nsp13176L176FCttTtt11B.1.5680.001111
ORF1ab/nsp13176L176FCttTtt11B.1.5800.004065
ORF1ab/nsp13176L176del2CTt--t11B.1.617.20.000004
ORF1ab/nsp13176L176del1cTtc-t11B.1.617.20.000004
ORF1ab/nsp13176L176PcTtcCt11B.1.6210.000089
ORF1ab/nsp13176L176LctTctC11B.1.9.50.005682
ORF1ab/nsp13176L176delCTT---11B.340.013699
ORF1ab/nsp13176L176FCttTtt11B.40.002208
ORF1ab/nsp13176L176FCttTtt11B.400.000364
ORF1ab/nsp13176L176LctTctC11B.400.000364
ORF1ab/nsp13176L176FCttTtt11B.60.00091
ORF1ab/nsp13176L176delCTT---11C.360.000911
ORF1ab/nsp13176L176LctTctC11C.36.30.000567
ORF1ab/nsp13176L176VCttGtt11P.10.000016
ORF1ab/nsp13176L176FCttTtt11P.1.170.000162
ORF1ab/nsp13176L176FCttTtt11P.1.70.000319
ORF1ab/nsp13176L176LctTctC11P.20.000187
ORF1ab/nsp13176L176LctTctC11P.30.001595
ORF1ab/nsp13176L176FCttTtt11Q.10.000126
ORF1ab/nsp13176L176FCttTtt11Q.30.000145
ORF1ab/nsp13176L176LctTctC11Q.40.000455
ORF1ab/nsp13176L176del2CTt--t11Q.80.000165
ORF1ab/nsp13176L176FCttTtt11Q.80.000165
ORF1ab/nsp13176L176FCttTtt11R.10.00009