CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 169 & Codon = Ttt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13169V169FV5493FnonsynGttTtt530953080.99981216741-16743

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13169V169FGttTtt53085309All0.001015
ORF1ab/nsp13169V169FGttTtt577577B.1.617.20.002173
ORF1ab/nsp13169V169FGttTtt528528AY.620.230065
ORF1ab/nsp13169V169FGttTtt349349B.1.1.70.000312
ORF1ab/nsp13169V169FGttTtt305305AY.40.000475
ORF1ab/nsp13169V169FGttTtt292292B.1.5610.115919
ORF1ab/nsp13169V169FGttTtt237237AY.440.001443
ORF1ab/nsp13169V169FGttTtt230230B.1.1.2271
ORF1ab/nsp13169V169FGttTtt221221B.1.20.001946
ORF1ab/nsp13169V169FGttTtt216217AY.430.000957
ORF1ab/nsp13169V169FGttTtt163163B.1.5960.014204
ORF1ab/nsp13169V169FGttTtt154154AY.1020.004083
ORF1ab/nsp13169V169FGttTtt131131AY.1030.000813
ORF1ab/nsp13169V169FGttTtt119119B.1.177.480.371875
ORF1ab/nsp13169V169FGttTtt104104D.20.007804
ORF1ab/nsp13169V169FGttTtt9393B.1.5160.181996
ORF1ab/nsp13169V169FGttTtt8484B.10.000769
ORF1ab/nsp13169V169FGttTtt8383AY.540.007914
ORF1ab/nsp13169V169FGttTtt8080AY.200.003109
ORF1ab/nsp13169V169FGttTtt7676AY.330.005075
ORF1ab/nsp13169V169FGttTtt7272AY.30.000716
ORF1ab/nsp13169V169FGttTtt6464AY.39.10.002535
ORF1ab/nsp13169V169FGttTtt6060AY.390.001483
ORF1ab/nsp13169V169FGttTtt5454AY.46.60.003899
ORF1ab/nsp13169V169FGttTtt4141AY.250.000247
ORF1ab/nsp13169V169FGttTtt4141AY.260.001161
ORF1ab/nsp13169V169FGttTtt4040AY.1080.044101
ORF1ab/nsp13169V169FGttTtt4040AY.750.002241
ORF1ab/nsp13169V169FGttTtt3434AY.1200.001264
ORF1ab/nsp13169V169FGttTtt3333AY.420.001328
ORF1ab/nsp13169V169FGttTtt3232B.1.10.000581
ORF1ab/nsp13169V169FGttTtt2929B.1.3110.007963
ORF1ab/nsp13169V169FGttTtt2929B.1.3190.088415
ORF1ab/nsp13169V169FGttTtt2727B.1.2210.001918
ORF1ab/nsp13169V169FGttTtt2727P.10.000425
ORF1ab/nsp13169V169FGttTtt2525AY.290.000394
ORF1ab/nsp13169V169FGttTtt2121B.1.1700.090517
ORF1ab/nsp13169V169FGttTtt2020AY.50.000413
ORF1ab/nsp13169V169FGttTtt2020B.1.4290.000471
ORF1ab/nsp13169V169FGttTtt1616AY.1090.011834
ORF1ab/nsp13169V169FGttTtt1414AY.1060.004689
ORF1ab/nsp13169V169FGttTtt1414AY.1110.002564
ORF1ab/nsp13169V169FGttTtt1414AY.4.50.001505
ORF1ab/nsp13169V169FGttTtt1414B.1.5260.000329
ORF1ab/nsp13169V169FGttTtt1313AY.1170.001099
ORF1ab/nsp13169V169FGttTtt1313AY.470.000404
ORF1ab/nsp13169V169FGttTtt1313B.1.2430.000905
ORF1ab/nsp13169V169FGttTtt1313B.1.3510.000386
ORF1ab/nsp13169V169FGttTtt1212AY.4.10.00885
ORF1ab/nsp13169V169FGttTtt1212AY.980.000948
ORF1ab/nsp13169V169FGttTtt1212B.1.1600.000374
ORF1ab/nsp13169V169FGttTtt1111B.1.36.290.005691
ORF1ab/nsp13169V169FGttTtt1010AY.1000.00046
ORF1ab/nsp13169V169FGttTtt1010B.1.5380.080645
ORF1ab/nsp13169V169FGttTtt99B.1.2340.001187
ORF1ab/nsp13169V169FGttTtt88AY.1190.000282
ORF1ab/nsp13169V169FGttTtt88AY.230.000558
ORF1ab/nsp13169V169FGttTtt88AY.98.10.000387
ORF1ab/nsp13169V169FGttTtt88P.20.001493
ORF1ab/nsp13169V169FGttTtt77AY.450.000852
ORF1ab/nsp13169V169FGttTtt77B.1.3240.011236
ORF1ab/nsp13169V169FGttTtt77B.1.6090.003356
ORF1ab/nsp13169V169FGttTtt77B.1.617.10.000903
ORF1ab/nsp13169V169FGttTtt77B.1.930.006536
ORF1ab/nsp13169V169FGttTtt66AY.4.20.00013
ORF1ab/nsp13169V169FGttTtt66AY.60.000247
ORF1ab/nsp13169V169FGttTtt66AY.880.005305
ORF1ab/nsp13169V169FGttTtt66B.1.1.5190.000238
ORF1ab/nsp13169V169FGttTtt66B.1.5250.000679
ORF1ab/nsp13169V169FGttTtt55AY.1210.000677
ORF1ab/nsp13169V169FGttTtt55AY.460.00052
ORF1ab/nsp13169V169FGttTtt55AY.9.20.000184
ORF1ab/nsp13169V169FGttTtt55B.1.1.2160.004452
ORF1ab/nsp13169V169FGttTtt55B.1.1.3910.042735
ORF1ab/nsp13169V169FGttTtt55B.1.2650.006353
ORF1ab/nsp13169V169FGttTtt55B.1.2810.108696
ORF1ab/nsp13169V169FGttTtt55B.1.36.220.006039
ORF1ab/nsp13169V169FGttTtt55B.1.5090.004329
ORF1ab/nsp13169V169FGttTtt44AY.370.001264
ORF1ab/nsp13169V169FGttTtt44AY.610.000419
ORF1ab/nsp13169V169FGttTtt44AY.820.005427
ORF1ab/nsp13169V169FGttTtt44AY.9.10.000335
ORF1ab/nsp13169V169FGttTtt44B.1.351.50.002398
ORF1ab/nsp13169V169FGttTtt44B.1.360.000584
ORF1ab/nsp13169V169FGttTtt44B.1.575.10.009756
ORF1ab/nsp13169V169FGttTtt44B.1.6210.000354
ORF1ab/nsp13169V169FGttTtt44P.1.140.000191
ORF1ab/nsp13169V169FGttTtt44P.1.150.000929
ORF1ab/nsp13169V169FGttTtt33AY.130.000483
ORF1ab/nsp13169V169FGttTtt33AY.16.10.00141
ORF1ab/nsp13169V169FGttTtt33AY.4.2.10.000447
ORF1ab/nsp13169V169FGttTtt33AY.590.001589
ORF1ab/nsp13169V169FGttTtt33AY.75.10.000541
ORF1ab/nsp13169V169FGttTtt33B.1.220.003953
ORF1ab/nsp13169V169FGttTtt33B.1.258.140.002941
ORF1ab/nsp13169V169FGttTtt33B.1.36.170.001482
ORF1ab/nsp13169V169FGttTtt33B.1.3910.003382
ORF1ab/nsp13169V169FGttTtt33B.1.3960.002117
ORF1ab/nsp13169V169FGttTtt33B.1.466.20.001174
ORF1ab/nsp13169V169FGttTtt33B.1.5170.001281
ORF1ab/nsp13169V169FGttTtt33B.1.5300.021429
ORF1ab/nsp13169V169FGttTtt33B.1.5820.001472
ORF1ab/nsp13169V169FGttTtt33B.1.6370.000219
ORF1ab/nsp13169V169FGttTtt33N.40.012766
ORF1ab/nsp13169V169FGttTtt22AY.110.002677
ORF1ab/nsp13169V169FGttTtt22AY.1130.000285
ORF1ab/nsp13169V169FGttTtt22AY.120.000632
ORF1ab/nsp13169V169FGttTtt22AY.140.000176
ORF1ab/nsp13169V169FGttTtt22AY.210.003795
ORF1ab/nsp13169V169FGttTtt22AY.3.10.000171
ORF1ab/nsp13169V169FGttTtt22AY.320.001065
ORF1ab/nsp13169V169FGttTtt22AY.400.001929
ORF1ab/nsp13169V169FGttTtt22AY.680.000547
ORF1ab/nsp13169V169FGttTtt22AY.740.000231
ORF1ab/nsp13169V169FGttTtt22AY.80.001212
ORF1ab/nsp13169V169FGttTtt22AY.90.000135
ORF1ab/nsp13169V169FGttTtt22AY.940.000885
ORF1ab/nsp13169V169FGttTtt22AZ.20.001642
ORF1ab/nsp13169V169FGttTtt22B.1.1.1230.035714
ORF1ab/nsp13169V169FGttTtt22B.1.1.3050.007722
ORF1ab/nsp13169V169FGttTtt22B.1.1.3060.000877
ORF1ab/nsp13169V169FGttTtt22B.1.1.3260.003521
ORF1ab/nsp13169V169FGttTtt22B.1.1770.000026
ORF1ab/nsp13169V169FGttTtt22B.1.177.170.001642
ORF1ab/nsp13169V169FGttTtt22B.1.177.320.002699
ORF1ab/nsp13169V169FGttTtt22B.1.2580.000133
ORF1ab/nsp13169V169FGttTtt22B.1.351.20.000605
ORF1ab/nsp13169V169FGttTtt22B.1.351.30.001753
ORF1ab/nsp13169V169FGttTtt22B.1.36.80.002
ORF1ab/nsp13169V169FGttTtt22B.1.4270.000101
ORF1ab/nsp13169V169FGttTtt22B.1.4700.002809
ORF1ab/nsp13169V169FGttTtt22B.1.5640.000852
ORF1ab/nsp13169V169FGttTtt22B.1.5800.00813
ORF1ab/nsp13169V169FGttTtt22B.1.5990.007299
ORF1ab/nsp13169V169FGttTtt22B.1.6200.001892
ORF1ab/nsp13169V169FGttTtt22B.30.001661
ORF1ab/nsp13169V169FGttTtt22C.370.000232
ORF1ab/nsp13169V169FGttTtt11A.180.05
ORF1ab/nsp13169V169FGttTtt11A.2.50.000499
ORF1ab/nsp13169V169FGttTtt11AY.1100.000113
ORF1ab/nsp13169V169FGttTtt11AY.116.10.000311
ORF1ab/nsp13169V169FGttTtt11AY.120.2.10.000498
ORF1ab/nsp13169V169FGttTtt11AY.160.00038
ORF1ab/nsp13169V169FGttTtt11AY.270.000065
ORF1ab/nsp13169V169FGttTtt11AY.340.000097
ORF1ab/nsp13169V169FGttTtt11AY.34.10.00051
ORF1ab/nsp13169V169FGttTtt11AY.46.30.000934
ORF1ab/nsp13169V169FGttTtt11AY.46.50.000198
ORF1ab/nsp13169V169FGttTtt11AY.480.000465
ORF1ab/nsp13169V169FGttTtt11AY.5.40.000277
ORF1ab/nsp13169V169FGttTtt11AY.570.000656
ORF1ab/nsp13169V169FGttTtt11AY.600.000938
ORF1ab/nsp13169V169FGttTtt11AY.630.000387
ORF1ab/nsp13169V169FGttTtt11AY.670.000464
ORF1ab/nsp13169V169FGttTtt11AY.840.000437
ORF1ab/nsp13169V169FGttTtt11AY.850.000427
ORF1ab/nsp13169V169FGttTtt11AY.930.000273
ORF1ab/nsp13169V169FGttTtt11AY.950.000761
ORF1ab/nsp13169V169FGttTtt11B0.000128
ORF1ab/nsp13169V169FGttTtt11B.1.1.1890.001513
ORF1ab/nsp13169V169FGttTtt11B.1.1.2220.000204
ORF1ab/nsp13169V169FGttTtt11B.1.1.280.000311
ORF1ab/nsp13169V169FGttTtt11B.1.1.3120.001912
ORF1ab/nsp13169V169FGttTtt11B.1.1.3180.000302
ORF1ab/nsp13169V169FGttTtt11B.1.1.4310.016129
ORF1ab/nsp13169V169FGttTtt11B.1.1.500.000679
ORF1ab/nsp13169V169FGttTtt11B.1.1.5140.038462
ORF1ab/nsp13169V169FGttTtt11B.1.1110.001175
ORF1ab/nsp13169V169FGttTtt11B.1.1280.000635
ORF1ab/nsp13169V169FGttTtt11B.1.1590.012195
ORF1ab/nsp13169V169FGttTtt11B.1.160.250.011111
ORF1ab/nsp13169V169FGttTtt11B.1.177.200.001517
ORF1ab/nsp13169V169FGttTtt11B.1.177.810.000189
ORF1ab/nsp13169V169FGttTtt11B.1.2150.009615
ORF1ab/nsp13169V169FGttTtt11B.1.2410.000812
ORF1ab/nsp13169V169FGttTtt11B.1.258.170.000104
ORF1ab/nsp13169V169FGttTtt11B.1.2790.000514
ORF1ab/nsp13169V169FGttTtt11B.1.3690.000285
ORF1ab/nsp13169V169FGttTtt11B.1.4340.052632
ORF1ab/nsp13169V169FGttTtt11B.1.4590.004082
ORF1ab/nsp13169V169FGttTtt11B.1.4990.00105
ORF1ab/nsp13169V169FGttTtt11B.1.5400.009709
ORF1ab/nsp13169V169FGttTtt11B.1.5490.007194
ORF1ab/nsp13169V169FGttTtt11B.1.5970.00463
ORF1ab/nsp13169V169FGttTtt11B.1.6180.004032
ORF1ab/nsp13169V169FGttTtt11B.1.6280.000352
ORF1ab/nsp13169V169FGttTtt11B.1.6310.003367
ORF1ab/nsp13169V169FGttTtt11B.1.80.001972
ORF1ab/nsp13169V169FGttTtt11B.350.007812
ORF1ab/nsp13169V169FGttTtt11B.400.000364
ORF1ab/nsp13169V169FGttTtt11C.180.002591
ORF1ab/nsp13169V169FGttTtt11C.360.000911
ORF1ab/nsp13169V169FGttTtt11D.30.005917
ORF1ab/nsp13169V169FGttTtt11M.10.023256
ORF1ab/nsp13169V169FGttTtt11P.1.160.000374
ORF1ab/nsp13169V169FGttTtt11P.1.20.001156
ORF1ab/nsp13169V169FGttTtt11P.70.004367
ORF1ab/nsp13169V169FGttTtt11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.