CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 153 | T153I | T5477I | nonsyn | aCt | aTt | 3662 | 3660 | 0.999454 | 16693-16695 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 3660 | 3662 | All | 0.0007 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1434 | 1434 | B.1.577 | 0.985567 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 550 | 550 | B.1.595 | 0.143528 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 368 | 368 | B.1.625 | 0.865882 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 303 | 303 | AY.4 | 0.000472 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 261 | 261 | B.1 | 0.002391 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 170 | 170 | B.1.1.7 | 0.000152 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 73 | 73 | B.1.521 | 0.363184 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 62 | 62 | B.1.617.2 | 0.000233 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 42 | 42 | B.1.575 | 0.012743 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 29 | 29 | B.1.2 | 0.000255 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 27 | 27 | AY.16 | 0.010251 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 23 | 23 | B.1.1 | 0.000417 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 21 | 21 | B.1.526 | 0.000494 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 14 | 14 | AY.25 | 0.000084 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 12 | 12 | AY.9.2 | 0.000441 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 12 | 12 | B.1.1.1 | 0.00392 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 11 | 11 | AY.42 | 0.000443 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 11 | 11 | AY.46.6 | 0.000794 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 10 | 10 | AY.47 | 0.000311 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 8 | 8 | B.1.596 | 0.000697 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 7 | 7 | B.1.111 | 0.008226 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 7 | 7 | B.1.234 | 0.000924 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 7 | 7 | B.6.6 | 0.006222 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 6 | 6 | B.1.128 | 0.003812 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 6 | 6 | B.1.36.29 | 0.003104 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 5 | 5 | B.1.284 | 0.065789 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 4 | 4 | B.1.1.464 | 0.005891 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 3 | 3 | AY.59 | 0.001589 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 3 | 3 | B | 0.000383 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 3 | 3 | B.1.1.385 | 0.013393 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 3 | 3 | B.1.1.523 | 0.004687 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 3 | 3 | B.1.580 | 0.012195 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 2 | 2 | B.1.1.176 | 0.000879 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 2 | 2 | B.1.36.27 | 0.001527 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | A.23 | 0.010526 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.5.2 | 0.002463 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.1.345 | 0.043478 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.1.350 | 0.04 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.626 | 0.005714 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.639 | 0.021739 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | P.1.8 | 0.004785 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | P.2 | 0.000187 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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