CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 153

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13153T153IT5477InonsynaCtaTt366236600.99945416693-16695
ORF1ab/nsp13153T153IT5477InonsynaCTaTA366220.0005461516693-16695
ORF1ab/nsp13153T153TT5477TsynacTacC3242310.71296316693-16695
ORF1ab/nsp13153T153TT5477TsynacTacA324530.1635816693-16695
ORF1ab/nsp13153T153TT5477TsynacTacG324400.12345716693-16695
ORF1ab/nsp13153T153AT5477AnonsynActGct1071050.98130816693-16695
ORF1ab/nsp13153T153AT5477AnonsynAcTGcA10720.018691616693-16695
ORF1ab/nsp13153T153delT5477deldelACT---9797116693-16695
ORF1ab/nsp13153T153NT5477NnonsynaCtaAt4444116693-16695
ORF1ab/nsp13153T153ST5477SnonsynaCtaGt750.71428616693-16695
ORF1ab/nsp13153T153ST5477SnonsynActTct720.28571416693-16695
ORF1ab/nsp13153T153del1T5477del1delacTac-640.66666716693-16695
ORF1ab/nsp13153T153del1T5477del1delACT-NN610.16666716693-16695
ORF1ab/nsp13153T153del1T5477del1delAct-ct610.16666716693-16695
ORF1ab/nsp13153T153HT5477HnonsynACTCAC22116693-16695
ORF1ab/nsp13153T153PT5477PnonsynActCct22116693-16695
ORF1ab/nsp13153T153KT5477KnonsynaCTaAG11116693-16695
ORF1ab/nsp13153T153FT5477FnonsynACtTTt11116693-16695

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13153T153IaCtaTt36603662All0.0007
ORF1ab/nsp13153T153IaCTaTA23662All0
ORF1ab/nsp13153T153IaCtaTt14341434B.1.5770.985567
ORF1ab/nsp13153T153IaCtaTt550550B.1.5950.143528
ORF1ab/nsp13153T153IaCtaTt368368B.1.6250.865882
ORF1ab/nsp13153T153TacTacC231324All0.000044
ORF1ab/nsp13153T153TacTacA53324All0.00001
ORF1ab/nsp13153T153TacTacG40324All0.000008
ORF1ab/nsp13153T153IaCtaTt303303AY.40.000472
ORF1ab/nsp13153T153IaCtaTt261261B.10.002391
ORF1ab/nsp13153T153IaCtaTt170170B.1.1.70.000152
ORF1ab/nsp13153T153TacTacC121139B.1.1.70.000108
ORF1ab/nsp13153T153TacTacA17139B.1.1.70.000015
ORF1ab/nsp13153T153TacTacG1139B.1.1.70.000001
ORF1ab/nsp13153T153AActGct105107All0.00002
ORF1ab/nsp13153T153AAcTGcA2107All0
ORF1ab/nsp13153T153delACT---9797All0.000019
ORF1ab/nsp13153T153IaCtaTt7373B.1.5210.363184
ORF1ab/nsp13153T153AActGct6868AY.50.001404
ORF1ab/nsp13153T153delACT---6363B.1.1.70.000056
ORF1ab/nsp13153T153IaCtaTt6262B.1.617.20.000233
ORF1ab/nsp13153T153NaCtaAt4444All0.000008
ORF1ab/nsp13153T153IaCtaTt4242B.1.5750.012743
ORF1ab/nsp13153T153TacTacC3535AY.440.000213
ORF1ab/nsp13153T153IaCtaTt2929B.1.20.000255
ORF1ab/nsp13153T153IaCtaTt2727AY.160.010251
ORF1ab/nsp13153T153IaCtaTt2323B.1.10.000417
ORF1ab/nsp13153T153IaCtaTt2121B.1.5260.000494
ORF1ab/nsp13153T153NaCtaAt1515AY.1030.000093
ORF1ab/nsp13153T153TacTacG1415AY.1190.000494
ORF1ab/nsp13153T153TacTacC115AY.1190.000035
ORF1ab/nsp13153T153IaCtaTt1414AY.250.000084
ORF1ab/nsp13153T153TacTacG814B.1.10.000145
ORF1ab/nsp13153T153TacTacC614B.1.10.000109
ORF1ab/nsp13153T153TacTacA1414B.1.3690.003993
ORF1ab/nsp13153T153delACT---1313B.1.1770.000171
ORF1ab/nsp13153T153IaCtaTt1212AY.9.20.000441
ORF1ab/nsp13153T153IaCtaTt1212B.1.1.10.00392
ORF1ab/nsp13153T153IaCtaTt1111AY.420.000443
ORF1ab/nsp13153T153IaCtaTt1111AY.46.60.000794
ORF1ab/nsp13153T153TacTacC811B.1.617.20.00003
ORF1ab/nsp13153T153TacTacG211B.1.617.20.000008
ORF1ab/nsp13153T153TacTacA111B.1.617.20.000004
ORF1ab/nsp13153T153TacTacC910AY.40.000014
ORF1ab/nsp13153T153TacTacA110AY.40.000002
ORF1ab/nsp13153T153IaCtaTt1010AY.470.000311
ORF1ab/nsp13153T153AActGct99B.1.351.20.002723
ORF1ab/nsp13153T153TacTacC58B.10.000046
ORF1ab/nsp13153T153TacTacA38B.10.000027
ORF1ab/nsp13153T153TacTacC88B.1.177.860.001468
ORF1ab/nsp13153T153TacTacC88B.1.20.00007
ORF1ab/nsp13153T153IaCtaTt88B.1.5960.000697
ORF1ab/nsp13153T153SaCtaGt57All0.000001
ORF1ab/nsp13153T153SActTct27All0
ORF1ab/nsp13153T153IaCtaTt77AY.1020.000186
ORF1ab/nsp13153T153TacTacC77AY.360.001037
ORF1ab/nsp13153T153IaCtaTt77AY.440.000043
ORF1ab/nsp13153T153TacTacA77B.1.1.3180.002112
ORF1ab/nsp13153T153AActGct77B.1.1.70.000006
ORF1ab/nsp13153T153IaCtaTt77B.1.1110.008226
ORF1ab/nsp13153T153IaCtaTt77B.1.2340.000924
ORF1ab/nsp13153T153IaCtaTt77B.1.4290.000165
ORF1ab/nsp13153T153IaCtaTt77B.6.60.006222
ORF1ab/nsp13153T153del1acTac-46All0.000001
ORF1ab/nsp13153T153del1Act-ct16All0
ORF1ab/nsp13153T153del1ACT-NN16All0
ORF1ab/nsp13153T153IaCtaTt66AY.200.000233
ORF1ab/nsp13153T153IaCtaTt66AY.430.000027
ORF1ab/nsp13153T153IaCtaTt66B.1.1280.003812
ORF1ab/nsp13153T153TacTacG66B.1.177.320.008097
ORF1ab/nsp13153T153IaCtaTt66B.1.36.290.003104
ORF1ab/nsp13153T153IaCtaTt55AY.1030.000031
ORF1ab/nsp13153T153IaCtaTt55AY.390.000124
ORF1ab/nsp13153T153NaCtaAt55B.10.000046
ORF1ab/nsp13153T153IaCtaTt55B.1.1770.000066
ORF1ab/nsp13153T153IaCtaTt55B.1.2840.065789
ORF1ab/nsp13153T153IaCtaTt55P.10.000079
ORF1ab/nsp13153T153TacTacG25P.10.000032
ORF1ab/nsp13153T153TacTacC25P.10.000032
ORF1ab/nsp13153T153TacTacA15P.10.000016
ORF1ab/nsp13153T153delACT---44AD.20.000876
ORF1ab/nsp13153T153IaCtaTt44AY.1200.000149
ORF1ab/nsp13153T153IaCtaTt44AY.290.000063
ORF1ab/nsp13153T153SaCtaGt44AY.30.00004
ORF1ab/nsp13153T153AActGct44AY.46.40.000658
ORF1ab/nsp13153T153IaCtaTt44AY.98.10.000194
ORF1ab/nsp13153T153IaCtaTt44B.1.1.4640.005891
ORF1ab/nsp13153T153NaCtaAt44B.1.1770.000053
ORF1ab/nsp13153T153TacTacC33AY.250.000018
ORF1ab/nsp13153T153IaCtaTt33AY.30.00003
ORF1ab/nsp13153T153IaCtaTt33AY.4.20.000065
ORF1ab/nsp13153T153IaCtaTt33AY.5.40.00083
ORF1ab/nsp13153T153IaCtaTt33AY.590.001589
ORF1ab/nsp13153T153IaCtaTt33B0.000383
ORF1ab/nsp13153T153IaCtaTt33B.1.1.2140.000166
ORF1ab/nsp13153T153IaCtaTt33B.1.1.3850.013393
ORF1ab/nsp13153T153IaCtaTt33B.1.1.5230.004687
ORF1ab/nsp13153T153NaCtaAt33B.1.1.70.000003
ORF1ab/nsp13153T153del1Act-ct13B.1.1.70.000001
ORF1ab/nsp13153T153del1ACT-NN13B.1.1.70.000001
ORF1ab/nsp13153T153del1acTac-13B.1.1.70.000001
ORF1ab/nsp13153T153IaCtaTt33B.1.2430.000209
ORF1ab/nsp13153T153IaCtaTt33B.1.3510.000089
ORF1ab/nsp13153T153TacTacA33B.1.5260.000071
ORF1ab/nsp13153T153IaCtaTt33B.1.5800.012195
ORF1ab/nsp13153T153TacTacA23P.1.140.000096
ORF1ab/nsp13153T153TacTacC13P.1.140.000048
ORF1ab/nsp13153T153IaCTaTA220.111111
ORF1ab/nsp13153T153AAcTGcA220.111111
ORF1ab/nsp13153T153HACTCAC220.111111
ORF1ab/nsp13153T153delACT---220.111111
ORF1ab/nsp13153T153PActCct22All0
ORF1ab/nsp13153T153HACTCAC22All0
ORF1ab/nsp13153T153TacTacC22AY.1020.000053
ORF1ab/nsp13153T153TacTacC12AY.1030.000006
ORF1ab/nsp13153T153TacTacG12AY.1030.000006
ORF1ab/nsp13153T153TacTacC22AY.1210.000271
ORF1ab/nsp13153T153TacTacG12AY.230.00007
ORF1ab/nsp13153T153TacTacC12AY.230.00007
ORF1ab/nsp13153T153NaCtaAt22AY.250.000012
ORF1ab/nsp13153T153IaCtaTt22AY.3.10.000171
ORF1ab/nsp13153T153AActGct22AY.40.000003
ORF1ab/nsp13153T153AActGct22AY.750.000112
ORF1ab/nsp13153T153delACT---22B.10.000018
ORF1ab/nsp13153T153NaCtaAt22B.1.10.000036
ORF1ab/nsp13153T153IaCtaTt22B.1.1.1760.000879
ORF1ab/nsp13153T153NaCtaAt22B.1.1.630.000772
ORF1ab/nsp13153T153TacTacG12B.1.1770.000013
ORF1ab/nsp13153T153TacTacC12B.1.1770.000013
ORF1ab/nsp13153T153IaCtaTt22B.1.3110.000549
ORF1ab/nsp13153T153IaCtaTt22B.1.36.270.001527
ORF1ab/nsp13153T153IaCtaTt22B.1.5760.001813
ORF1ab/nsp13153T153IaCtaTt22B.60.00182
ORF1ab/nsp13153T153IaCtaTt22Q.80.00033
ORF1ab/nsp13153T153AActGct11A0.000387
ORF1ab/nsp13153T153NaCtaAt11A.10.000282
ORF1ab/nsp13153T153AActGct11A.20.000662
ORF1ab/nsp13153T153PActCct11A.2.40.003367
ORF1ab/nsp13153T153IaCtaTt11A.2.5.20.001572
ORF1ab/nsp13153T153IaCtaTt11A.230.010526
ORF1ab/nsp13153T153IaCtaTt11A.270.001656
ORF1ab/nsp13153T153IaCtaTt11A.280.002646
ORF1ab/nsp13153T153IaCtaTt11A.50.001923
ORF1ab/nsp13153T153KaCTaAG11All0
ORF1ab/nsp13153T153FACtTTt11All0
ORF1ab/nsp13153T153AActGct11AY.10.000396
ORF1ab/nsp13153T153IaCtaTt11AY.100.00053
ORF1ab/nsp13153T153AActGct11AY.1000.000046
ORF1ab/nsp13153T153NaCtaAt11AY.1060.000335
ORF1ab/nsp13153T153IaCtaTt11AY.1090.00074
ORF1ab/nsp13153T153IaCtaTt11AY.1180.000063
ORF1ab/nsp13153T153NaCtaAt11AY.230.00007
ORF1ab/nsp13153T153KaCTaAG11AY.230.00007
ORF1ab/nsp13153T153AActGct11AY.23.10.000417
ORF1ab/nsp13153T153delACT---11AY.240.000431
ORF1ab/nsp13153T153IaCtaTt11AY.260.000028
ORF1ab/nsp13153T153AActGct11AY.260.000028
ORF1ab/nsp13153T153IaCtaTt11AY.270.000065
ORF1ab/nsp13153T153NaCtaAt11AY.290.000016
ORF1ab/nsp13153T153TacTacC11AY.30.00001
ORF1ab/nsp13153T153TacTacG11AY.330.000067
ORF1ab/nsp13153T153NaCtaAt11AY.390.000025
ORF1ab/nsp13153T153NaCtaAt11AY.40.000002
ORF1ab/nsp13153T153AActGct11AY.4.20.000022
ORF1ab/nsp13153T153TacTacA11AY.430.000004
ORF1ab/nsp13153T153AActGct11AY.430.000004
ORF1ab/nsp13153T153IaCtaTt11AY.450.000122
ORF1ab/nsp13153T153IaCtaTt11AY.46.20.000635
ORF1ab/nsp13153T153NaCtaAt11AY.46.60.000072
ORF1ab/nsp13153T153IaCtaTt11AY.5.20.002463
ORF1ab/nsp13153T153IaCtaTt11AY.510.000909
ORF1ab/nsp13153T153IaCtaTt11AY.520.000814
ORF1ab/nsp13153T153IaCtaTt11AY.540.000095
ORF1ab/nsp13153T153IaCtaTt11AY.550.000917
ORF1ab/nsp13153T153TacTacC11AY.590.00053
ORF1ab/nsp13153T153IaCtaTt11AY.610.000105
ORF1ab/nsp13153T153IaCtaTt11AY.690.000187
ORF1ab/nsp13153T153TacTacG11AY.690.000187
ORF1ab/nsp13153T153IaCtaTt11AY.730.000665
ORF1ab/nsp13153T153IaCtaTt11AY.750.000056
ORF1ab/nsp13153T153TacTacC11AY.75.10.00018
ORF1ab/nsp13153T153IaCtaTt11AY.75.10.00018
ORF1ab/nsp13153T153IaCtaTt11AY.780.001541
ORF1ab/nsp13153T153IaCtaTt11AY.830.001724
ORF1ab/nsp13153T153TacTacC11AY.850.000427
ORF1ab/nsp13153T153IaCtaTt11AY.940.000443
ORF1ab/nsp13153T153delACT---11AZ.20.000821
ORF1ab/nsp13153T153TacTacA11B0.000128
ORF1ab/nsp13153T153AActGct11B.10.000009
ORF1ab/nsp13153T153del1acTac-11B.10.000009
ORF1ab/nsp13153T153AActGct11B.1.10.000018
ORF1ab/nsp13153T153PActCct11B.1.10.000018
ORF1ab/nsp13153T153delACT---11B.1.10.000018
ORF1ab/nsp13153T153IaCtaTt11B.1.1.2200.001859
ORF1ab/nsp13153T153delACT---11B.1.1.2310.003096
ORF1ab/nsp13153T153IaCtaTt11B.1.1.2630.001558
ORF1ab/nsp13153T153IaCtaTt11B.1.1.2790.001121
ORF1ab/nsp13153T153delACT---11B.1.1.3060.000438
ORF1ab/nsp13153T153IaCtaTt11B.1.1.3060.000438
ORF1ab/nsp13153T153IaCtaTt11B.1.1.3070.002532
ORF1ab/nsp13153T153delACT---11B.1.1.3150.008475
ORF1ab/nsp13153T153IaCtaTt11B.1.1.3450.043478
ORF1ab/nsp13153T153IaCtaTt11B.1.1.3500.04
ORF1ab/nsp13153T153NaCtaAt11B.1.1.3720.000689
ORF1ab/nsp13153T153delACT---11B.1.1.440.00241
ORF1ab/nsp13153T153AActGct11B.1.1.460.004367
ORF1ab/nsp13153T153IaCtaTt11B.1.1.470.005348
ORF1ab/nsp13153T153IaCtaTt11B.1.1.4860.001577
ORF1ab/nsp13153T153TacTacA11B.1.1.5190.00004
ORF1ab/nsp13153T153IaCtaTt11B.1.1.5190.00004
ORF1ab/nsp13153T153NaCtaAt11B.1.1180.006711
ORF1ab/nsp13153T153IaCtaTt11B.1.1570.002985
ORF1ab/nsp13153T153IaCtaTt11B.1.1600.000031
ORF1ab/nsp13153T153delACT---11B.1.160.170.001701
ORF1ab/nsp13153T153IaCtaTt11B.1.177.730.000566
ORF1ab/nsp13153T153delACT---11B.1.177.730.000566
ORF1ab/nsp13153T153delACT---11B.1.177.830.001481
ORF1ab/nsp13153T153IaCtaTt11B.1.177.90.001332
ORF1ab/nsp13153T153del1acTac-11B.1.20.000009
ORF1ab/nsp13153T153del1acTac-11B.1.2060.000816
ORF1ab/nsp13153T153IaCtaTt11B.1.2100.002132
ORF1ab/nsp13153T153IaCtaTt11B.1.214.20.0006
ORF1ab/nsp13153T153IaCtaTt11B.1.2220.001692
ORF1ab/nsp13153T153SaCtaGt11B.1.2400.000216
ORF1ab/nsp13153T153delACT---11B.1.2420.018868
ORF1ab/nsp13153T153NaCtaAt11B.1.2430.00007
ORF1ab/nsp13153T153IaCtaTt11B.1.2580.000067
ORF1ab/nsp13153T153IaCtaTt11B.1.258.140.00098
ORF1ab/nsp13153T153TacTacC11B.1.3110.000275
ORF1ab/nsp13153T153IaCtaTt11B.1.3200.001245
ORF1ab/nsp13153T153IaCtaTt11B.1.3360.002439
ORF1ab/nsp13153T153IaCtaTt11B.1.3400.004292
ORF1ab/nsp13153T153IaCtaTt11B.1.3490.000715
ORF1ab/nsp13153T153TacTacG11B.1.3510.00003
ORF1ab/nsp13153T153delACT---11B.1.360.000146
ORF1ab/nsp13153T153IaCtaTt11B.1.3610.001289
ORF1ab/nsp13153T153IaCtaTt11B.1.3980.002976
ORF1ab/nsp13153T153TacTacA11B.1.4000.000429
ORF1ab/nsp13153T153IaCtaTt11B.1.4040.001302
ORF1ab/nsp13153T153TacTacC11B.1.4290.000024
ORF1ab/nsp13153T153AActGct11B.1.4290.000024
ORF1ab/nsp13153T153TacTacC11B.1.438.10.000107
ORF1ab/nsp13153T153IaCtaTt11B.1.5610.000397
ORF1ab/nsp13153T153IaCtaTt11B.1.5640.000426
ORF1ab/nsp13153T153IaCtaTt11B.1.6060.006024
ORF1ab/nsp13153T153TacTacG11B.1.617.10.000129
ORF1ab/nsp13153T153SActTct11B.1.617.10.000129
ORF1ab/nsp13153T153FACtTTt11B.1.617.20.000004
ORF1ab/nsp13153T153SActTct11B.1.617.20.000004
ORF1ab/nsp13153T153NaCtaAt11B.1.617.20.000004
ORF1ab/nsp13153T153IaCtaTt11B.1.6230.000536
ORF1ab/nsp13153T153IaCtaTt11B.1.6260.005714
ORF1ab/nsp13153T153IaCtaTt11B.1.6390.021739
ORF1ab/nsp13153T153TacTacC11B.1.930.000934
ORF1ab/nsp13153T153IaCtaTt11B.290.003509
ORF1ab/nsp13153T153IaCtaTt11B.400.000364
ORF1ab/nsp13153T153IaCtaTt11C.370.000116
ORF1ab/nsp13153T153TacTacC11D.20.000075
ORF1ab/nsp13153T153AActGct11P.10.000016
ORF1ab/nsp13153T153IaCtaTt11P.1.10.000318
ORF1ab/nsp13153T153IaCtaTt11P.1.150.000232
ORF1ab/nsp13153T153IaCtaTt11P.1.170.000162
ORF1ab/nsp13153T153IaCtaTt11P.1.80.004785
ORF1ab/nsp13153T153IaCtaTt11P.20.000187
ORF1ab/nsp13153T153delACT---11Q.10.000126
ORF1ab/nsp13153T153TacTacC11Q.80.000165