CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 153 | T153I | T5477I | nonsyn | aCt | aTt | 3662 | 3660 | 0.999454 | 16693-16695 |
ORF1ab/nsp13 | 153 | T153I | T5477I | nonsyn | aCT | aTA | 3662 | 2 | 0.00054615 | 16693-16695 |
ORF1ab/nsp13 | 153 | T153T | T5477T | syn | acT | acC | 324 | 231 | 0.712963 | 16693-16695 |
ORF1ab/nsp13 | 153 | T153T | T5477T | syn | acT | acA | 324 | 53 | 0.16358 | 16693-16695 |
ORF1ab/nsp13 | 153 | T153T | T5477T | syn | acT | acG | 324 | 40 | 0.123457 | 16693-16695 |
ORF1ab/nsp13 | 153 | T153A | T5477A | nonsyn | Act | Gct | 107 | 105 | 0.981308 | 16693-16695 |
ORF1ab/nsp13 | 153 | T153A | T5477A | nonsyn | AcT | GcA | 107 | 2 | 0.0186916 | 16693-16695 |
ORF1ab/nsp13 | 153 | T153del | T5477del | del | ACT | --- | 97 | 97 | 1 | 16693-16695 |
ORF1ab/nsp13 | 153 | T153N | T5477N | nonsyn | aCt | aAt | 44 | 44 | 1 | 16693-16695 |
ORF1ab/nsp13 | 153 | T153S | T5477S | nonsyn | aCt | aGt | 7 | 5 | 0.714286 | 16693-16695 |
ORF1ab/nsp13 | 153 | T153S | T5477S | nonsyn | Act | Tct | 7 | 2 | 0.285714 | 16693-16695 |
ORF1ab/nsp13 | 153 | T153del1 | T5477del1 | del | acT | ac- | 6 | 4 | 0.666667 | 16693-16695 |
ORF1ab/nsp13 | 153 | T153del1 | T5477del1 | del | ACT | -NN | 6 | 1 | 0.166667 | 16693-16695 |
ORF1ab/nsp13 | 153 | T153del1 | T5477del1 | del | Act | -ct | 6 | 1 | 0.166667 | 16693-16695 |
ORF1ab/nsp13 | 153 | T153H | T5477H | nonsyn | ACT | CAC | 2 | 2 | 1 | 16693-16695 |
ORF1ab/nsp13 | 153 | T153P | T5477P | nonsyn | Act | Cct | 2 | 2 | 1 | 16693-16695 |
ORF1ab/nsp13 | 153 | T153K | T5477K | nonsyn | aCT | aAG | 1 | 1 | 1 | 16693-16695 |
ORF1ab/nsp13 | 153 | T153F | T5477F | nonsyn | ACt | TTt | 1 | 1 | 1 | 16693-16695 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 3660 | 3662 | All | 0.0007 |
ORF1ab/nsp13 | 153 | T153I | aCT | aTA | 2 | 3662 | All | 0 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1434 | 1434 | B.1.577 | 0.985567 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 550 | 550 | B.1.595 | 0.143528 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 368 | 368 | B.1.625 | 0.865882 |
ORF1ab/nsp13 | 153 | T153T | acT | acC | 231 | 324 | All | 0.000044 |
ORF1ab/nsp13 | 153 | T153T | acT | acA | 53 | 324 | All | 0.00001 |
ORF1ab/nsp13 | 153 | T153T | acT | acG | 40 | 324 | All | 0.000008 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 303 | 303 | AY.4 | 0.000472 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 261 | 261 | B.1 | 0.002391 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 170 | 170 | B.1.1.7 | 0.000152 |
ORF1ab/nsp13 | 153 | T153T | acT | acC | 121 | 139 | B.1.1.7 | 0.000108 |
ORF1ab/nsp13 | 153 | T153T | acT | acA | 17 | 139 | B.1.1.7 | 0.000015 |
ORF1ab/nsp13 | 153 | T153T | acT | acG | 1 | 139 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 153 | T153A | Act | Gct | 105 | 107 | All | 0.00002 |
ORF1ab/nsp13 | 153 | T153A | AcT | GcA | 2 | 107 | All | 0 |
ORF1ab/nsp13 | 153 | T153del | ACT | --- | 97 | 97 | All | 0.000019 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 73 | 73 | B.1.521 | 0.363184 |
ORF1ab/nsp13 | 153 | T153A | Act | Gct | 68 | 68 | AY.5 | 0.001404 |
ORF1ab/nsp13 | 153 | T153del | ACT | --- | 63 | 63 | B.1.1.7 | 0.000056 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 62 | 62 | B.1.617.2 | 0.000233 |
ORF1ab/nsp13 | 153 | T153N | aCt | aAt | 44 | 44 | All | 0.000008 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 42 | 42 | B.1.575 | 0.012743 |
ORF1ab/nsp13 | 153 | T153T | acT | acC | 35 | 35 | AY.44 | 0.000213 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 29 | 29 | B.1.2 | 0.000255 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 27 | 27 | AY.16 | 0.010251 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 23 | 23 | B.1.1 | 0.000417 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 21 | 21 | B.1.526 | 0.000494 |
ORF1ab/nsp13 | 153 | T153N | aCt | aAt | 15 | 15 | AY.103 | 0.000093 |
ORF1ab/nsp13 | 153 | T153T | acT | acG | 14 | 15 | AY.119 | 0.000494 |
ORF1ab/nsp13 | 153 | T153T | acT | acC | 1 | 15 | AY.119 | 0.000035 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 14 | 14 | AY.25 | 0.000084 |
ORF1ab/nsp13 | 153 | T153T | acT | acG | 8 | 14 | B.1.1 | 0.000145 |
ORF1ab/nsp13 | 153 | T153T | acT | acC | 6 | 14 | B.1.1 | 0.000109 |
ORF1ab/nsp13 | 153 | T153T | acT | acA | 14 | 14 | B.1.369 | 0.003993 |
ORF1ab/nsp13 | 153 | T153del | ACT | --- | 13 | 13 | B.1.177 | 0.000171 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 12 | 12 | AY.9.2 | 0.000441 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 12 | 12 | B.1.1.1 | 0.00392 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 11 | 11 | AY.42 | 0.000443 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 11 | 11 | AY.46.6 | 0.000794 |
ORF1ab/nsp13 | 153 | T153T | acT | acC | 8 | 11 | B.1.617.2 | 0.00003 |
ORF1ab/nsp13 | 153 | T153T | acT | acG | 2 | 11 | B.1.617.2 | 0.000008 |
ORF1ab/nsp13 | 153 | T153T | acT | acA | 1 | 11 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 153 | T153T | acT | acC | 9 | 10 | AY.4 | 0.000014 |
ORF1ab/nsp13 | 153 | T153T | acT | acA | 1 | 10 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 10 | 10 | AY.47 | 0.000311 |
ORF1ab/nsp13 | 153 | T153A | Act | Gct | 9 | 9 | B.1.351.2 | 0.002723 |
ORF1ab/nsp13 | 153 | T153T | acT | acC | 5 | 8 | B.1 | 0.000046 |
ORF1ab/nsp13 | 153 | T153T | acT | acA | 3 | 8 | B.1 | 0.000027 |
ORF1ab/nsp13 | 153 | T153T | acT | acC | 8 | 8 | B.1.177.86 | 0.001468 |
ORF1ab/nsp13 | 153 | T153T | acT | acC | 8 | 8 | B.1.2 | 0.00007 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 8 | 8 | B.1.596 | 0.000697 |
ORF1ab/nsp13 | 153 | T153S | aCt | aGt | 5 | 7 | All | 0.000001 |
ORF1ab/nsp13 | 153 | T153S | Act | Tct | 2 | 7 | All | 0 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp13 | 153 | T153T | acT | acC | 7 | 7 | AY.36 | 0.001037 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp13 | 153 | T153T | acT | acA | 7 | 7 | B.1.1.318 | 0.002112 |
ORF1ab/nsp13 | 153 | T153A | Act | Gct | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 7 | 7 | B.1.111 | 0.008226 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 7 | 7 | B.1.234 | 0.000924 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 7 | 7 | B.6.6 | 0.006222 |
ORF1ab/nsp13 | 153 | T153del1 | acT | ac- | 4 | 6 | All | 0.000001 |
ORF1ab/nsp13 | 153 | T153del1 | Act | -ct | 1 | 6 | All | 0 |
ORF1ab/nsp13 | 153 | T153del1 | ACT | -NN | 1 | 6 | All | 0 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 6 | 6 | B.1.128 | 0.003812 |
ORF1ab/nsp13 | 153 | T153T | acT | acG | 6 | 6 | B.1.177.32 | 0.008097 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 6 | 6 | B.1.36.29 | 0.003104 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp13 | 153 | T153N | aCt | aAt | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 5 | 5 | B.1.284 | 0.065789 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp13 | 153 | T153T | acT | acG | 2 | 5 | P.1 | 0.000032 |
ORF1ab/nsp13 | 153 | T153T | acT | acC | 2 | 5 | P.1 | 0.000032 |
ORF1ab/nsp13 | 153 | T153T | acT | acA | 1 | 5 | P.1 | 0.000016 |
ORF1ab/nsp13 | 153 | T153del | ACT | --- | 4 | 4 | AD.2 | 0.000876 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp13 | 153 | T153S | aCt | aGt | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp13 | 153 | T153A | Act | Gct | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 4 | 4 | B.1.1.464 | 0.005891 |
ORF1ab/nsp13 | 153 | T153N | aCt | aAt | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp13 | 153 | T153T | acT | acC | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 3 | 3 | AY.59 | 0.001589 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 3 | 3 | B | 0.000383 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 3 | 3 | B.1.1.385 | 0.013393 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 3 | 3 | B.1.1.523 | 0.004687 |
ORF1ab/nsp13 | 153 | T153N | aCt | aAt | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp13 | 153 | T153del1 | Act | -ct | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 153 | T153del1 | ACT | -NN | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 153 | T153del1 | acT | ac- | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp13 | 153 | T153T | acT | acA | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 3 | 3 | B.1.580 | 0.012195 |
ORF1ab/nsp13 | 153 | T153T | acT | acA | 2 | 3 | P.1.14 | 0.000096 |
ORF1ab/nsp13 | 153 | T153T | acT | acC | 1 | 3 | P.1.14 | 0.000048 |
ORF1ab/nsp13 | 153 | T153I | aCT | aTA | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 153 | T153A | AcT | GcA | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 153 | T153H | ACT | CAC | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 153 | T153del | ACT | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 153 | T153P | Act | Cct | 2 | 2 | All | 0 |
ORF1ab/nsp13 | 153 | T153H | ACT | CAC | 2 | 2 | All | 0 |
ORF1ab/nsp13 | 153 | T153T | acT | acC | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp13 | 153 | T153T | acT | acC | 1 | 2 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 153 | T153T | acT | acG | 1 | 2 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 153 | T153T | acT | acC | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp13 | 153 | T153T | acT | acG | 1 | 2 | AY.23 | 0.00007 |
ORF1ab/nsp13 | 153 | T153T | acT | acC | 1 | 2 | AY.23 | 0.00007 |
ORF1ab/nsp13 | 153 | T153N | aCt | aAt | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp13 | 153 | T153A | Act | Gct | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp13 | 153 | T153A | Act | Gct | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp13 | 153 | T153del | ACT | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp13 | 153 | T153N | aCt | aAt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 2 | 2 | B.1.1.176 | 0.000879 |
ORF1ab/nsp13 | 153 | T153N | aCt | aAt | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp13 | 153 | T153T | acT | acG | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 153 | T153T | acT | acC | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 2 | 2 | B.1.36.27 | 0.001527 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp13 | 153 | T153A | Act | Gct | 1 | 1 | A | 0.000387 |
ORF1ab/nsp13 | 153 | T153N | aCt | aAt | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp13 | 153 | T153A | Act | Gct | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp13 | 153 | T153P | Act | Cct | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | A.23 | 0.010526 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp13 | 153 | T153K | aCT | aAG | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 153 | T153F | ACt | TTt | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 153 | T153A | Act | Gct | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp13 | 153 | T153A | Act | Gct | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp13 | 153 | T153N | aCt | aAt | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp13 | 153 | T153N | aCt | aAt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp13 | 153 | T153K | aCT | aAG | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp13 | 153 | T153A | Act | Gct | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp13 | 153 | T153del | ACT | --- | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 153 | T153A | Act | Gct | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp13 | 153 | T153N | aCt | aAt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp13 | 153 | T153T | acT | acC | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp13 | 153 | T153T | acT | acG | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp13 | 153 | T153N | aCt | aAt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 153 | T153N | aCt | aAt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 153 | T153A | Act | Gct | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp13 | 153 | T153T | acT | acA | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 153 | T153A | Act | Gct | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp13 | 153 | T153N | aCt | aAt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.5.2 | 0.002463 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp13 | 153 | T153T | acT | acC | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp13 | 153 | T153T | acT | acG | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 153 | T153T | acT | acC | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp13 | 153 | T153T | acT | acC | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp13 | 153 | T153del | ACT | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp13 | 153 | T153T | acT | acA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp13 | 153 | T153A | Act | Gct | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 153 | T153del1 | acT | ac- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 153 | T153A | Act | Gct | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 153 | T153P | Act | Cct | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 153 | T153del | ACT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp13 | 153 | T153del | ACT | --- | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp13 | 153 | T153del | ACT | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp13 | 153 | T153del | ACT | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.1.345 | 0.043478 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.1.350 | 0.04 |
ORF1ab/nsp13 | 153 | T153N | aCt | aAt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp13 | 153 | T153del | ACT | --- | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp13 | 153 | T153A | Act | Gct | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp13 | 153 | T153T | acT | acA | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp13 | 153 | T153N | aCt | aAt | 1 | 1 | B.1.118 | 0.006711 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp13 | 153 | T153del | ACT | --- | 1 | 1 | B.1.160.17 | 0.001701 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp13 | 153 | T153del | ACT | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp13 | 153 | T153del | ACT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp13 | 153 | T153del1 | acT | ac- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 153 | T153del1 | acT | ac- | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp13 | 153 | T153S | aCt | aGt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp13 | 153 | T153del | ACT | --- | 1 | 1 | B.1.242 | 0.018868 |
ORF1ab/nsp13 | 153 | T153N | aCt | aAt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp13 | 153 | T153T | acT | acC | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp13 | 153 | T153T | acT | acG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 153 | T153del | ACT | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp13 | 153 | T153T | acT | acA | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp13 | 153 | T153T | acT | acC | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp13 | 153 | T153A | Act | Gct | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp13 | 153 | T153T | acT | acC | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp13 | 153 | T153T | acT | acG | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp13 | 153 | T153S | Act | Tct | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp13 | 153 | T153F | ACt | TTt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 153 | T153S | Act | Tct | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 153 | T153N | aCt | aAt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.626 | 0.005714 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.1.639 | 0.021739 |
ORF1ab/nsp13 | 153 | T153T | acT | acC | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp13 | 153 | T153T | acT | acC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 153 | T153A | Act | Gct | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | P.1.8 | 0.004785 |
ORF1ab/nsp13 | 153 | T153I | aCt | aTt | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp13 | 153 | T153del | ACT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp13 | 153 | T153T | acT | acC | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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