CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 153

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13153T153IT5477InonsynaCtaTt366236600.99945416693-16695
ORF1ab/nsp13153T153IT5477InonsynaCTaTA366220.0005461516693-16695
ORF1ab/nsp13153T153TT5477TsynacTacC3242310.71296316693-16695
ORF1ab/nsp13153T153TT5477TsynacTacA324530.1635816693-16695
ORF1ab/nsp13153T153TT5477TsynacTacG324400.12345716693-16695
ORF1ab/nsp13153T153AT5477AnonsynActGct1071050.98130816693-16695
ORF1ab/nsp13153T153AT5477AnonsynAcTGcA10720.018691616693-16695
ORF1ab/nsp13153T153delT5477deldelACT---9797116693-16695
ORF1ab/nsp13153T153NT5477NnonsynaCtaAt4444116693-16695
ORF1ab/nsp13153T153ST5477SnonsynaCtaGt750.71428616693-16695
ORF1ab/nsp13153T153ST5477SnonsynActTct720.28571416693-16695
ORF1ab/nsp13153T153del1T5477del1delacTac-640.66666716693-16695
ORF1ab/nsp13153T153del1T5477del1delACT-NN610.16666716693-16695
ORF1ab/nsp13153T153del1T5477del1delAct-ct610.16666716693-16695
ORF1ab/nsp13153T153HT5477HnonsynACTCAC22116693-16695
ORF1ab/nsp13153T153PT5477PnonsynActCct22116693-16695
ORF1ab/nsp13153T153KT5477KnonsynaCTaAG11116693-16695
ORF1ab/nsp13153T153FT5477FnonsynACtTTt11116693-16695

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13153T153IaCtaTt36603662All0.0007
ORF1ab/nsp13153T153IaCTaTA23662All0
ORF1ab/nsp13153T153IaCtaTt14341434B.1.5770.985567
ORF1ab/nsp13153T153IaCtaTt550550B.1.5950.143528
ORF1ab/nsp13153T153IaCtaTt368368B.1.6250.865882
ORF1ab/nsp13153T153TacTacC231324All0.000044
ORF1ab/nsp13153T153TacTacA53324All0.00001
ORF1ab/nsp13153T153TacTacG40324All0.000008
ORF1ab/nsp13153T153IaCtaTt303303AY.40.000472
ORF1ab/nsp13153T153IaCtaTt261261B.10.002391
ORF1ab/nsp13153T153IaCtaTt170170B.1.1.70.000152
ORF1ab/nsp13153T153TacTacC121139B.1.1.70.000108
ORF1ab/nsp13153T153TacTacA17139B.1.1.70.000015
ORF1ab/nsp13153T153TacTacG1139B.1.1.70.000001
ORF1ab/nsp13153T153AActGct105107All0.00002
ORF1ab/nsp13153T153AAcTGcA2107All0
ORF1ab/nsp13153T153delACT---9797All0.000019
ORF1ab/nsp13153T153IaCtaTt7373B.1.5210.363184
ORF1ab/nsp13153T153AActGct6868AY.50.001404
ORF1ab/nsp13153T153delACT---6363B.1.1.70.000056
ORF1ab/nsp13153T153IaCtaTt6262B.1.617.20.000233
ORF1ab/nsp13153T153NaCtaAt4444All0.000008
ORF1ab/nsp13153T153IaCtaTt4242B.1.5750.012743
ORF1ab/nsp13153T153TacTacC3535AY.440.000213
ORF1ab/nsp13153T153IaCtaTt2929B.1.20.000255
ORF1ab/nsp13153T153IaCtaTt2727AY.160.010251
ORF1ab/nsp13153T153IaCtaTt2323B.1.10.000417
ORF1ab/nsp13153T153IaCtaTt2121B.1.5260.000494
ORF1ab/nsp13153T153NaCtaAt1515AY.1030.000093
ORF1ab/nsp13153T153TacTacG1415AY.1190.000494
ORF1ab/nsp13153T153TacTacC115AY.1190.000035
ORF1ab/nsp13153T153IaCtaTt1414AY.250.000084
ORF1ab/nsp13153T153TacTacG814B.1.10.000145
ORF1ab/nsp13153T153TacTacC614B.1.10.000109
ORF1ab/nsp13153T153TacTacA1414B.1.3690.003993
ORF1ab/nsp13153T153delACT---1313B.1.1770.000171
ORF1ab/nsp13153T153IaCtaTt1212AY.9.20.000441
ORF1ab/nsp13153T153IaCtaTt1212B.1.1.10.00392
ORF1ab/nsp13153T153IaCtaTt1111AY.420.000443
ORF1ab/nsp13153T153IaCtaTt1111AY.46.60.000794
ORF1ab/nsp13153T153TacTacC811B.1.617.20.00003
ORF1ab/nsp13153T153TacTacG211B.1.617.20.000008
ORF1ab/nsp13153T153TacTacA111B.1.617.20.000004
ORF1ab/nsp13153T153TacTacC910AY.40.000014
ORF1ab/nsp13153T153TacTacA110AY.40.000002
ORF1ab/nsp13153T153IaCtaTt1010AY.470.000311
ORF1ab/nsp13153T153AActGct99B.1.351.20.002723
ORF1ab/nsp13153T153TacTacC58B.10.000046
ORF1ab/nsp13153T153TacTacA38B.10.000027
ORF1ab/nsp13153T153TacTacC88B.1.177.860.001468
ORF1ab/nsp13153T153TacTacC88B.1.20.00007
ORF1ab/nsp13153T153IaCtaTt88B.1.5960.000697
ORF1ab/nsp13153T153SaCtaGt57All0.000001
ORF1ab/nsp13153T153SActTct27All0
ORF1ab/nsp13153T153IaCtaTt77AY.1020.000186
ORF1ab/nsp13153T153TacTacC77AY.360.001037
ORF1ab/nsp13153T153IaCtaTt77AY.440.000043
ORF1ab/nsp13153T153TacTacA77B.1.1.3180.002112
ORF1ab/nsp13153T153AActGct77B.1.1.70.000006
ORF1ab/nsp13153T153IaCtaTt77B.1.1110.008226
ORF1ab/nsp13153T153IaCtaTt77B.1.2340.000924
ORF1ab/nsp13153T153IaCtaTt77B.1.4290.000165
ORF1ab/nsp13153T153IaCtaTt77B.6.60.006222
ORF1ab/nsp13153T153del1acTac-46All0.000001
ORF1ab/nsp13153T153del1Act-ct16All0
ORF1ab/nsp13153T153del1ACT-NN16All0
ORF1ab/nsp13153T153IaCtaTt66AY.200.000233
ORF1ab/nsp13153T153IaCtaTt66AY.430.000027
ORF1ab/nsp13153T153IaCtaTt66B.1.1280.003812
ORF1ab/nsp13153T153TacTacG66B.1.177.320.008097
ORF1ab/nsp13153T153IaCtaTt66B.1.36.290.003104
ORF1ab/nsp13153T153IaCtaTt55AY.1030.000031
ORF1ab/nsp13153T153IaCtaTt55AY.390.000124
ORF1ab/nsp13153T153NaCtaAt55B.10.000046
ORF1ab/nsp13153T153IaCtaTt55B.1.1770.000066
ORF1ab/nsp13153T153IaCtaTt55B.1.2840.065789
ORF1ab/nsp13153T153IaCtaTt55P.10.000079
ORF1ab/nsp13153T153TacTacG25P.10.000032
ORF1ab/nsp13153T153TacTacC25P.10.000032
ORF1ab/nsp13153T153TacTacA15P.10.000016
ORF1ab/nsp13153T153delACT---44AD.20.000876
ORF1ab/nsp13153T153IaCtaTt44AY.1200.000149
ORF1ab/nsp13153T153IaCtaTt44AY.290.000063
ORF1ab/nsp13153T153SaCtaGt44AY.30.00004
ORF1ab/nsp13153T153AActGct44AY.46.40.000658
ORF1ab/nsp13153T153IaCtaTt44AY.98.10.000194
ORF1ab/nsp13153T153IaCtaTt44B.1.1.4640.005891
ORF1ab/nsp13153T153NaCtaAt44B.1.1770.000053
ORF1ab/nsp13153T153TacTacC33AY.250.000018
ORF1ab/nsp13153T153IaCtaTt33AY.30.00003
ORF1ab/nsp13153T153IaCtaTt33AY.4.20.000065
ORF1ab/nsp13153T153IaCtaTt33AY.5.40.00083
ORF1ab/nsp13153T153IaCtaTt33AY.590.001589
ORF1ab/nsp13153T153IaCtaTt33B0.000383
ORF1ab/nsp13153T153IaCtaTt33B.1.1.2140.000166
ORF1ab/nsp13153T153IaCtaTt33B.1.1.3850.013393
ORF1ab/nsp13153T153IaCtaTt33B.1.1.5230.004687
ORF1ab/nsp13153T153NaCtaAt33B.1.1.70.000003
ORF1ab/nsp13153T153del1Act-ct13B.1.1.70.000001
ORF1ab/nsp13153T153del1ACT-NN13B.1.1.70.000001
ORF1ab/nsp13153T153del1acTac-13B.1.1.70.000001
ORF1ab/nsp13153T153IaCtaTt33B.1.2430.000209
ORF1ab/nsp13153T153IaCtaTt33B.1.3510.000089
ORF1ab/nsp13153T153TacTacA33B.1.5260.000071
ORF1ab/nsp13153T153IaCtaTt33B.1.5800.012195
ORF1ab/nsp13153T153TacTacA23P.1.140.000096
ORF1ab/nsp13153T153TacTacC13P.1.140.000048
ORF1ab/nsp13153T153IaCTaTA220.111111
ORF1ab/nsp13153T153AAcTGcA220.111111
ORF1ab/nsp13153T153HACTCAC220.111111
ORF1ab/nsp13153T153delACT---220.111111
ORF1ab/nsp13153T153PActCct22All0
ORF1ab/nsp13153T153HACTCAC22All0
ORF1ab/nsp13153T153TacTacC22AY.1020.000053
ORF1ab/nsp13153T153TacTacC12AY.1030.000006
ORF1ab/nsp13153T153TacTacG12AY.1030.000006
ORF1ab/nsp13153T153TacTacC22AY.1210.000271
ORF1ab/nsp13153T153TacTacG12AY.230.00007
ORF1ab/nsp13153T153TacTacC12AY.230.00007
ORF1ab/nsp13153T153NaCtaAt22AY.250.000012
ORF1ab/nsp13153T153IaCtaTt22AY.3.10.000171
ORF1ab/nsp13153T153AActGct22AY.40.000003
ORF1ab/nsp13153T153AActGct22AY.750.000112
ORF1ab/nsp13153T153delACT---22B.10.000018
ORF1ab/nsp13153T153NaCtaAt22B.1.10.000036
ORF1ab/nsp13153T153IaCtaTt22B.1.1.1760.000879
ORF1ab/nsp13153T153NaCtaAt22B.1.1.630.000772
ORF1ab/nsp13153T153TacTacG12B.1.1770.000013
ORF1ab/nsp13153T153TacTacC12B.1.1770.000013
ORF1ab/nsp13153T153IaCtaTt22B.1.3110.000549
ORF1ab/nsp13153T153IaCtaTt22B.1.36.270.001527
ORF1ab/nsp13153T153IaCtaTt22B.1.5760.001813
ORF1ab/nsp13153T153IaCtaTt22B.60.00182
ORF1ab/nsp13153T153IaCtaTt22Q.80.00033
ORF1ab/nsp13153T153AActGct11A0.000387
ORF1ab/nsp13153T153NaCtaAt11A.10.000282
ORF1ab/nsp13153T153AActGct11A.20.000662
ORF1ab/nsp13153T153PActCct11A.2.40.003367
ORF1ab/nsp13153T153IaCtaTt11A.2.5.20.001572
ORF1ab/nsp13153T153IaCtaTt11A.230.010526
ORF1ab/nsp13153T153IaCtaTt11A.270.001656
ORF1ab/nsp13153T153IaCtaTt11A.280.002646
ORF1ab/nsp13153T153IaCtaTt11A.50.001923
ORF1ab/nsp13153T153KaCTaAG11All0
ORF1ab/nsp13153T153FACtTTt11All0
ORF1ab/nsp13153T153AActGct11AY.10.000396
ORF1ab/nsp13153T153IaCtaTt11AY.100.00053
ORF1ab/nsp13153T153AActGct11AY.1000.000046
ORF1ab/nsp13153T153NaCtaAt11AY.1060.000335
ORF1ab/nsp13153T153IaCtaTt11AY.1090.00074
ORF1ab/nsp13153T153IaCtaTt11AY.1180.000063
ORF1ab/nsp13153T153NaCtaAt11AY.230.00007
ORF1ab/nsp13153T153KaCTaAG11AY.230.00007
ORF1ab/nsp13153T153AActGct11AY.23.10.000417
ORF1ab/nsp13153T153delACT---11AY.240.000431
ORF1ab/nsp13153T153IaCtaTt11AY.260.000028
ORF1ab/nsp13153T153AActGct11AY.260.000028
ORF1ab/nsp13153T153IaCtaTt11AY.270.000065
ORF1ab/nsp13153T153NaCtaAt11AY.290.000016
ORF1ab/nsp13153T153TacTacC11AY.30.00001
ORF1ab/nsp13153T153TacTacG11AY.330.000067
ORF1ab/nsp13153T153NaCtaAt11AY.390.000025
ORF1ab/nsp13153T153NaCtaAt11AY.40.000002
ORF1ab/nsp13153T153AActGct11AY.4.20.000022
ORF1ab/nsp13153T153TacTacA11AY.430.000004
ORF1ab/nsp13153T153AActGct11AY.430.000004
ORF1ab/nsp13153T153IaCtaTt11AY.450.000122
ORF1ab/nsp13153T153IaCtaTt11AY.46.20.000635
ORF1ab/nsp13153T153NaCtaAt11AY.46.60.000072
ORF1ab/nsp13153T153IaCtaTt11AY.5.20.002463
ORF1ab/nsp13153T153IaCtaTt11AY.510.000909
ORF1ab/nsp13153T153IaCtaTt11AY.520.000814
ORF1ab/nsp13153T153IaCtaTt11AY.540.000095
ORF1ab/nsp13153T153IaCtaTt11AY.550.000917
ORF1ab/nsp13153T153TacTacC11AY.590.00053
ORF1ab/nsp13153T153IaCtaTt11AY.610.000105
ORF1ab/nsp13153T153IaCtaTt11AY.690.000187
ORF1ab/nsp13153T153TacTacG11AY.690.000187
ORF1ab/nsp13153T153IaCtaTt11AY.730.000665
ORF1ab/nsp13153T153IaCtaTt11AY.750.000056
ORF1ab/nsp13153T153TacTacC11AY.75.10.00018
ORF1ab/nsp13153T153IaCtaTt11AY.75.10.00018
ORF1ab/nsp13153T153IaCtaTt11AY.780.001541
ORF1ab/nsp13153T153IaCtaTt11AY.830.001724
ORF1ab/nsp13153T153TacTacC11AY.850.000427
ORF1ab/nsp13153T153IaCtaTt11AY.940.000443
ORF1ab/nsp13153T153delACT---11AZ.20.000821
ORF1ab/nsp13153T153TacTacA11B0.000128
ORF1ab/nsp13153T153AActGct11B.10.000009
ORF1ab/nsp13153T153del1acTac-11B.10.000009
ORF1ab/nsp13153T153AActGct11B.1.10.000018
ORF1ab/nsp13153T153PActCct11B.1.10.000018
ORF1ab/nsp13153T153delACT---11B.1.10.000018
ORF1ab/nsp13153T153IaCtaTt11B.1.1.2200.001859
ORF1ab/nsp13153T153delACT---11B.1.1.2310.003096
ORF1ab/nsp13153T153IaCtaTt11B.1.1.2630.001558
ORF1ab/nsp13153T153IaCtaTt11B.1.1.2790.001121
ORF1ab/nsp13153T153delACT---11B.1.1.3060.000438
ORF1ab/nsp13153T153IaCtaTt11B.1.1.3060.000438
ORF1ab/nsp13153T153IaCtaTt11B.1.1.3070.002532
ORF1ab/nsp13153T153delACT---11B.1.1.3150.008475
ORF1ab/nsp13153T153IaCtaTt11B.1.1.3450.043478
ORF1ab/nsp13153T153IaCtaTt11B.1.1.3500.04
ORF1ab/nsp13153T153NaCtaAt11B.1.1.3720.000689
ORF1ab/nsp13153T153delACT---11B.1.1.440.00241
ORF1ab/nsp13153T153AActGct11B.1.1.460.004367
ORF1ab/nsp13153T153IaCtaTt11B.1.1.470.005348
ORF1ab/nsp13153T153IaCtaTt11B.1.1.4860.001577
ORF1ab/nsp13153T153TacTacA11B.1.1.5190.00004
ORF1ab/nsp13153T153IaCtaTt11B.1.1.5190.00004
ORF1ab/nsp13153T153NaCtaAt11B.1.1180.006711
ORF1ab/nsp13153T153IaCtaTt11B.1.1570.002985
ORF1ab/nsp13153T153IaCtaTt11B.1.1600.000031
ORF1ab/nsp13153T153delACT---11B.1.160.170.001701
ORF1ab/nsp13153T153IaCtaTt11B.1.177.730.000566
ORF1ab/nsp13153T153delACT---11B.1.177.730.000566
ORF1ab/nsp13153T153delACT---11B.1.177.830.001481
ORF1ab/nsp13153T153IaCtaTt11B.1.177.90.001332
ORF1ab/nsp13153T153del1acTac-11B.1.20.000009
ORF1ab/nsp13153T153del1acTac-11B.1.2060.000816
ORF1ab/nsp13153T153IaCtaTt11B.1.2100.002132
ORF1ab/nsp13153T153IaCtaTt11B.1.214.20.0006
ORF1ab/nsp13153T153IaCtaTt11B.1.2220.001692
ORF1ab/nsp13153T153SaCtaGt11B.1.2400.000216
ORF1ab/nsp13153T153delACT---11B.1.2420.018868
ORF1ab/nsp13153T153NaCtaAt11B.1.2430.00007
ORF1ab/nsp13153T153IaCtaTt11B.1.2580.000067
ORF1ab/nsp13153T153IaCtaTt11B.1.258.140.00098
ORF1ab/nsp13153T153TacTacC11B.1.3110.000275
ORF1ab/nsp13153T153IaCtaTt11B.1.3200.001245
ORF1ab/nsp13153T153IaCtaTt11B.1.3360.002439
ORF1ab/nsp13153T153IaCtaTt11B.1.3400.004292
ORF1ab/nsp13153T153IaCtaTt11B.1.3490.000715
ORF1ab/nsp13153T153TacTacG11B.1.3510.00003
ORF1ab/nsp13153T153delACT---11B.1.360.000146
ORF1ab/nsp13153T153IaCtaTt11B.1.3610.001289
ORF1ab/nsp13153T153IaCtaTt11B.1.3980.002976
ORF1ab/nsp13153T153TacTacA11B.1.4000.000429
ORF1ab/nsp13153T153IaCtaTt11B.1.4040.001302
ORF1ab/nsp13153T153TacTacC11B.1.4290.000024
ORF1ab/nsp13153T153AActGct11B.1.4290.000024
ORF1ab/nsp13153T153TacTacC11B.1.438.10.000107
ORF1ab/nsp13153T153IaCtaTt11B.1.5610.000397
ORF1ab/nsp13153T153IaCtaTt11B.1.5640.000426
ORF1ab/nsp13153T153IaCtaTt11B.1.6060.006024
ORF1ab/nsp13153T153TacTacG11B.1.617.10.000129
ORF1ab/nsp13153T153SActTct11B.1.617.10.000129
ORF1ab/nsp13153T153FACtTTt11B.1.617.20.000004
ORF1ab/nsp13153T153SActTct11B.1.617.20.000004
ORF1ab/nsp13153T153NaCtaAt11B.1.617.20.000004
ORF1ab/nsp13153T153IaCtaTt11B.1.6230.000536
ORF1ab/nsp13153T153IaCtaTt11B.1.6260.005714
ORF1ab/nsp13153T153IaCtaTt11B.1.6390.021739
ORF1ab/nsp13153T153TacTacC11B.1.930.000934
ORF1ab/nsp13153T153IaCtaTt11B.290.003509
ORF1ab/nsp13153T153IaCtaTt11B.400.000364
ORF1ab/nsp13153T153IaCtaTt11C.370.000116
ORF1ab/nsp13153T153TacTacC11D.20.000075
ORF1ab/nsp13153T153AActGct11P.10.000016
ORF1ab/nsp13153T153IaCtaTt11P.1.10.000318
ORF1ab/nsp13153T153IaCtaTt11P.1.150.000232
ORF1ab/nsp13153T153IaCtaTt11P.1.170.000162
ORF1ab/nsp13153T153IaCtaTt11P.1.80.004785
ORF1ab/nsp13153T153IaCtaTt11P.20.000187
ORF1ab/nsp13153T153delACT---11Q.10.000126
ORF1ab/nsp13153T153TacTacC11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.