CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 151 | I151V | I5475V | nonsyn | Att | Gtt | 2593 | 2593 | 1 | 16687-16689 |
ORF1ab/nsp13 | 151 | I151S | I5475S | nonsyn | aTt | aGt | 321 | 319 | 0.993769 | 16687-16689 |
ORF1ab/nsp13 | 151 | I151S | I5475S | nonsyn | aTT | aGC | 321 | 1 | 0.00311526 | 16687-16689 |
ORF1ab/nsp13 | 151 | I151S | I5475S | nonsyn | ATt | TCt | 321 | 1 | 0.00311526 | 16687-16689 |
ORF1ab/nsp13 | 151 | I151I | I5475I | syn | atT | atA | 188 | 105 | 0.558511 | 16687-16689 |
ORF1ab/nsp13 | 151 | I151I | I5475I | syn | atT | atC | 188 | 83 | 0.441489 | 16687-16689 |
ORF1ab/nsp13 | 151 | I151del | I5475del | del | ATT | --- | 103 | 103 | 1 | 16687-16689 |
ORF1ab/nsp13 | 151 | I151T | I5475T | nonsyn | aTt | aCt | 43 | 41 | 0.953488 | 16687-16689 |
ORF1ab/nsp13 | 151 | I151T | I5475T | nonsyn | aTT | aCA | 43 | 2 | 0.0465116 | 16687-16689 |
ORF1ab/nsp13 | 151 | I151L | I5475L | nonsyn | Att | Ctt | 17 | 13 | 0.764706 | 16687-16689 |
ORF1ab/nsp13 | 151 | I151L | I5475L | nonsyn | AtT | CtG | 17 | 2 | 0.117647 | 16687-16689 |
ORF1ab/nsp13 | 151 | I151L | I5475L | nonsyn | AtT | CtC | 17 | 2 | 0.117647 | 16687-16689 |
ORF1ab/nsp13 | 151 | I151F | I5475F | nonsyn | Att | Ttt | 7 | 7 | 1 | 16687-16689 |
ORF1ab/nsp13 | 151 | I151del1 | I5475del1 | del | Att | -tt | 6 | 3 | 0.5 | 16687-16689 |
ORF1ab/nsp13 | 151 | I151del1 | I5475del1 | del | AtT | -tN | 6 | 1 | 0.166667 | 16687-16689 |
ORF1ab/nsp13 | 151 | I151del1 | I5475del1 | del | atT | at- | 6 | 1 | 0.166667 | 16687-16689 |
ORF1ab/nsp13 | 151 | I151del1 | I5475del1 | del | ATT | -NN | 6 | 1 | 0.166667 | 16687-16689 |
ORF1ab/nsp13 | 151 | I151M | I5475M | nonsyn | atT | atG | 4 | 4 | 1 | 16687-16689 |
ORF1ab/nsp13 | 151 | I151N | I5475N | nonsyn | aTt | aAt | 2 | 2 | 1 | 16687-16689 |
ORF1ab/nsp13 | 151 | I151D | I5475D | nonsyn | ATt | GAt | 2 | 2 | 1 | 16687-16689 |
ORF1ab/nsp13 | 151 | I151P | I5475P | nonsyn | ATt | CCt | 1 | 1 | 1 | 16687-16689 |
ORF1ab/nsp13 | 151 | I151R | I5475R | nonsyn | aTT | aGG | 1 | 1 | 1 | 16687-16689 |
ORF1ab/nsp13 | 151 | I151Q | I5475Q | nonsyn | ATT | CAG | 1 | 1 | 1 | 16687-16689 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 2593 | 2593 | All | 0.000496 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1130 | 1130 | B.1.351.3 | 0.990359 |
ORF1ab/nsp13 | 151 | I151S | aTt | aGt | 319 | 321 | All | 0.000061 |
ORF1ab/nsp13 | 151 | I151S | ATt | TCt | 1 | 321 | All | 0 |
ORF1ab/nsp13 | 151 | I151S | aTT | aGC | 1 | 321 | All | 0 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 318 | 318 | B.1.617.2 | 0.001197 |
ORF1ab/nsp13 | 151 | I151S | aTt | aGt | 289 | 289 | AY.4 | 0.00045 |
ORF1ab/nsp13 | 151 | I151I | atT | atA | 105 | 188 | All | 0.00002 |
ORF1ab/nsp13 | 151 | I151I | atT | atC | 83 | 188 | All | 0.000016 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 104 | 104 | AY.33 | 0.006945 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 104 | 104 | AY.43 | 0.000461 |
ORF1ab/nsp13 | 151 | I151del | ATT | --- | 103 | 103 | All | 0.00002 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 101 | 101 | AY.4 | 0.000157 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 70 | 70 | B.1.1.7 | 0.000063 |
ORF1ab/nsp13 | 151 | I151del | ATT | --- | 64 | 64 | B.1.1.7 | 0.000057 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 63 | 63 | AY.25 | 0.000379 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 58 | 58 | B.1.351.2 | 0.017549 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 56 | 56 | AY.103 | 0.000348 |
ORF1ab/nsp13 | 151 | I151I | atT | atA | 44 | 53 | AY.4 | 0.000068 |
ORF1ab/nsp13 | 151 | I151I | atT | atC | 9 | 53 | AY.4 | 0.000014 |
ORF1ab/nsp13 | 151 | I151T | aTt | aCt | 41 | 43 | All | 0.000008 |
ORF1ab/nsp13 | 151 | I151T | aTT | aCA | 2 | 43 | All | 0 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 37 | 37 | B.1.351 | 0.0011 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 36 | 36 | AY.44 | 0.000219 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 36 | 36 | B.1.637 | 0.002631 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 29 | 29 | AY.4.4 | 0.011866 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 28 | 28 | AY.75 | 0.001569 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 27 | 27 | AY.39.1 | 0.00107 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 24 | 24 | B.1.570 | 0.070588 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 23 | 23 | AY.39 | 0.000568 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 22 | 22 | AY.26 | 0.000623 |
ORF1ab/nsp13 | 151 | I151I | atT | atC | 22 | 22 | B.1.526 | 0.000517 |
ORF1ab/nsp13 | 151 | I151I | atT | atA | 15 | 21 | AY.43 | 0.000066 |
ORF1ab/nsp13 | 151 | I151I | atT | atC | 6 | 21 | AY.43 | 0.000027 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 21 | 21 | B.1 | 0.000192 |
ORF1ab/nsp13 | 151 | I151T | aTt | aCt | 18 | 18 | B.1.1.7 | 0.000016 |
ORF1ab/nsp13 | 151 | I151L | Att | Ctt | 13 | 17 | All | 0.000002 |
ORF1ab/nsp13 | 151 | I151L | AtT | CtG | 2 | 17 | All | 0 |
ORF1ab/nsp13 | 151 | I151L | AtT | CtC | 2 | 17 | All | 0 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 16 | 16 | AY.3 | 0.000159 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 16 | 16 | AY.47 | 0.000498 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 15 | 15 | B.1.398 | 0.044643 |
ORF1ab/nsp13 | 151 | I151I | atT | atA | 13 | 15 | B.1.617.2 | 0.000049 |
ORF1ab/nsp13 | 151 | I151I | atT | atC | 2 | 15 | B.1.617.2 | 0.000008 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 14 | 14 | AY.32 | 0.007455 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 14 | 14 | B.1.1 | 0.000254 |
ORF1ab/nsp13 | 151 | I151del | ATT | --- | 14 | 14 | B.1.177 | 0.000184 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 11 | 11 | AY.102 | 0.000292 |
ORF1ab/nsp13 | 151 | I151I | atT | atA | 10 | 10 | AY.117 | 0.000845 |
ORF1ab/nsp13 | 151 | I151S | aTt | aGt | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp13 | 151 | I151I | atT | atC | 7 | 10 | B.1.1.7 | 0.000006 |
ORF1ab/nsp13 | 151 | I151I | atT | atA | 3 | 10 | B.1.1.7 | 0.000003 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 9 | 9 | B.1.1.28 | 0.002801 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 9 | 9 | B.1.2 | 0.000079 |
ORF1ab/nsp13 | 151 | I151I | atT | atC | 5 | 8 | B.1.2 | 0.000044 |
ORF1ab/nsp13 | 151 | I151I | atT | atA | 3 | 8 | B.1.2 | 0.000026 |
ORF1ab/nsp13 | 151 | I151F | Att | Ttt | 7 | 7 | All | 0.000001 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp13 | 151 | I151L | Att | Ctt | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 7 | 7 | AY.5 | 0.000145 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 7 | 7 | B.1.258 | 0.000466 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 7 | 7 | B.1.427 | 0.000353 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp13 | 151 | I151S | aTt | aGt | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp13 | 151 | I151L | AtT | CtG | 2 | 6 | 0.111111 | |
ORF1ab/nsp13 | 151 | I151L | AtT | CtC | 2 | 6 | 0.111111 | |
ORF1ab/nsp13 | 151 | I151L | Att | Ctt | 2 | 6 | 0.111111 | |
ORF1ab/nsp13 | 151 | I151del1 | Att | -tt | 3 | 6 | All | 0.000001 |
ORF1ab/nsp13 | 151 | I151del1 | AtT | -tN | 1 | 6 | All | 0 |
ORF1ab/nsp13 | 151 | I151del1 | atT | at- | 1 | 6 | All | 0 |
ORF1ab/nsp13 | 151 | I151del1 | ATT | -NN | 1 | 6 | All | 0 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 6 | 6 | B | 0.000767 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 6 | 6 | B.1.1.269 | 0.008119 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 6 | 6 | C.38 | 0.048387 |
ORF1ab/nsp13 | 151 | I151T | aTt | aCt | 5 | 5 | A | 0.001935 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 5 | 5 | B.1.357 | 0.047619 |
ORF1ab/nsp13 | 151 | I151del | ATT | --- | 4 | 4 | AD.2 | 0.000876 |
ORF1ab/nsp13 | 151 | I151M | atT | atG | 4 | 4 | All | 0.000001 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 4 | 4 | AY.113 | 0.00057 |
ORF1ab/nsp13 | 151 | I151I | atT | atA | 3 | 4 | AY.39 | 0.000074 |
ORF1ab/nsp13 | 151 | I151I | atT | atC | 1 | 4 | AY.39 | 0.000025 |
ORF1ab/nsp13 | 151 | I151I | atT | atC | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 4 | 4 | AY.84 | 0.00175 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 4 | 4 | B.1.177.4 | 0.000844 |
ORF1ab/nsp13 | 151 | I151I | atT | atA | 2 | 3 | AY.102 | 0.000053 |
ORF1ab/nsp13 | 151 | I151I | atT | atC | 1 | 3 | AY.102 | 0.000027 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 3 | 3 | AY.120.1 | 0.000963 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp13 | 151 | I151I | atT | atC | 2 | 3 | AY.3 | 0.00002 |
ORF1ab/nsp13 | 151 | I151I | atT | atA | 1 | 3 | AY.3 | 0.00001 |
ORF1ab/nsp13 | 151 | I151T | aTt | aCt | 3 | 3 | AY.37 | 0.000948 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp13 | 151 | I151S | aTt | aGt | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp13 | 151 | I151T | aTt | aCt | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 3 | 3 | B.1.1.243 | 0.012245 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 3 | 3 | B.1.1.374 | 0.007126 |
ORF1ab/nsp13 | 151 | I151I | atT | atA | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp13 | 151 | I151I | atT | atC | 3 | 3 | B.1.177.17 | 0.002463 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 3 | 3 | B.1.177.56 | 0.002003 |
ORF1ab/nsp13 | 151 | I151F | Att | Ttt | 3 | 3 | B.1.36.8 | 0.003 |
ORF1ab/nsp13 | 151 | I151del | ATT | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 151 | I151D | ATt | GAt | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 151 | I151T | aTT | aCA | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 151 | I151N | aTt | aAt | 2 | 2 | All | 0 |
ORF1ab/nsp13 | 151 | I151D | ATt | GAt | 2 | 2 | All | 0 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp13 | 151 | I151S | aTt | aGt | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 2 | 2 | AY.94 | 0.000885 |
ORF1ab/nsp13 | 151 | I151del | ATT | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp13 | 151 | I151del | ATT | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp13 | 151 | I151S | ATt | TCt | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 151 | I151S | aTt | aGt | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 151 | I151I | atT | atC | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp13 | 151 | I151I | atT | atC | 2 | 2 | B.1.1.243 | 0.008163 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp13 | 151 | I151S | aTt | aGt | 2 | 2 | B.1.177.85 | 0.01087 |
ORF1ab/nsp13 | 151 | I151T | aTt | aCt | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp13 | 151 | I151I | atT | atC | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp13 | 151 | I151T | aTt | aCt | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp13 | 151 | I151I | atT | atA | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp13 | 151 | I151I | atT | atC | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp13 | 151 | I151I | atT | atA | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp13 | 151 | I151I | atT | atA | 1 | 1 | A | 0.000387 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp13 | 151 | I151Q | ATT | CAG | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 151 | I151R | aTT | aGG | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 151 | I151P | ATt | CCt | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp13 | 151 | I151I | atT | atC | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 151 | I151T | aTt | aCt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 151 | I151I | atT | atC | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp13 | 151 | I151I | atT | atC | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp13 | 151 | I151del1 | atT | at- | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp13 | 151 | I151I | atT | atC | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp13 | 151 | I151del | ATT | --- | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp13 | 151 | I151I | atT | atC | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp13 | 151 | I151del1 | AtT | -tN | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp13 | 151 | I151L | Att | Ctt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 151 | I151S | aTt | aGt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp13 | 151 | I151del1 | Att | -tt | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp13 | 151 | I151T | aTt | aCt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp13 | 151 | I151S | aTt | aGt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp13 | 151 | I151P | ATt | CCt | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp13 | 151 | I151I | atT | atC | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp13 | 151 | I151M | atT | atG | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp13 | 151 | I151I | atT | atA | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp13 | 151 | I151S | aTt | aGt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp13 | 151 | I151I | atT | atA | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp13 | 151 | I151L | Att | Ctt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp13 | 151 | I151I | atT | atC | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp13 | 151 | I151del | ATT | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp13 | 151 | I151I | atT | atC | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 151 | I151F | Att | Ttt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 151 | I151I | atT | atA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 151 | I151M | atT | atG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 151 | I151R | aTT | aGG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 151 | I151L | Att | Ctt | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp13 | 151 | I151del | ATT | --- | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp13 | 151 | I151I | atT | atC | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | B.1.1.273 | 0.006757 |
ORF1ab/nsp13 | 151 | I151T | aTt | aCt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp13 | 151 | I151T | aTt | aCt | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp13 | 151 | I151del | ATT | --- | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp13 | 151 | I151del | ATT | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp13 | 151 | I151del | ATT | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp13 | 151 | I151S | aTt | aGt | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp13 | 151 | I151M | atT | atG | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp13 | 151 | I151del | ATT | --- | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp13 | 151 | I151L | Att | Ctt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 151 | I151N | aTt | aAt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 151 | I151M | atT | atG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | B.1.142 | 0.002899 |
ORF1ab/nsp13 | 151 | I151del | ATT | --- | 1 | 1 | B.1.160.17 | 0.001701 |
ORF1ab/nsp13 | 151 | I151del | ATT | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp13 | 151 | I151N | aTt | aAt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 151 | I151del1 | ATT | -NN | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp13 | 151 | I151del | ATT | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp13 | 151 | I151del | ATT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp13 | 151 | I151T | aTt | aCt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 151 | I151del1 | Att | -tt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp13 | 151 | I151del | ATT | --- | 1 | 1 | B.1.242 | 0.018868 |
ORF1ab/nsp13 | 151 | I151T | aTt | aCt | 1 | 1 | B.1.277 | 0.02381 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp13 | 151 | I151del | ATT | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp13 | 151 | I151I | atT | atC | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp13 | 151 | I151F | Att | Ttt | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp13 | 151 | I151T | aTt | aCt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | B.1.443 | 0.004673 |
ORF1ab/nsp13 | 151 | I151del | ATT | --- | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp13 | 151 | I151T | aTt | aCt | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | B.1.554 | 0.004405 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp13 | 151 | I151I | atT | atC | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp13 | 151 | I151I | atT | atC | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp13 | 151 | I151del1 | Att | -tt | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp13 | 151 | I151F | Att | Ttt | 1 | 1 | B.1.9 | 0.006173 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | B.45 | 0.003831 |
ORF1ab/nsp13 | 151 | I151S | aTt | aGt | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp13 | 151 | I151I | atT | atC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 151 | I151Q | ATT | CAG | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp13 | 151 | I151S | aTT | aGC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp13 | 151 | I151V | Att | Gtt | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp13 | 151 | I151del | ATT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp13 | 151 | I151F | Att | Ttt | 1 | 1 | Q.1 | 0.000126 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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