CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 140

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13140A140AA5464AsyngcTgcC6125740.93790816654-16656
ORF1ab/nsp13140A140AA5464AsyngcTgcA612300.049019616654-16656
ORF1ab/nsp13140A140AA5464AsyngcTgcG61280.013071916654-16656
ORF1ab/nsp13140A140SA5464SnonsynGctTct1821790.98351616654-16656
ORF1ab/nsp13140A140SA5464SnonsynGCtAGt18220.01098916654-16656
ORF1ab/nsp13140A140SA5464SnonsynGCTAGC18210.0054945116654-16656
ORF1ab/nsp13140A140delA5464deldelGCT---141141116654-16656
ORF1ab/nsp13140A140VA5464VnonsyngCtgTt5959116654-16656
ORF1ab/nsp13140A140TA5464TnonsynGctAct39380.97435916654-16656
ORF1ab/nsp13140A140TA5464TnonsynGcTAcC3910.02564116654-16656
ORF1ab/nsp13140A140DA5464DnonsyngCtgAt55116654-16656
ORF1ab/nsp13140A140GA5464GnonsyngCtgGt430.7516654-16656
ORF1ab/nsp13140A140GA5464GnonsyngCTgGC410.2516654-16656
ORF1ab/nsp13140A140NA5464NnonsynGCtAAt22116654-16656
ORF1ab/nsp13140A140LA5464LnonsynGCtCTt22116654-16656
ORF1ab/nsp13140A140IA5464InonsynGCtATt22116654-16656
ORF1ab/nsp13140A140HA5464HnonsynGCtCAt22116654-16656
ORF1ab/nsp13140A140PA5464PnonsynGctCct22116654-16656
ORF1ab/nsp13140A140EA5464EnonsyngCTgAG11116654-16656

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13140A140AgcTgcC574612All0.00011
ORF1ab/nsp13140A140AgcTgcA30612All0.000006
ORF1ab/nsp13140A140AgcTgcG8612All0.000002
ORF1ab/nsp13140A140AgcTgcC261264B.1.1.70.000234
ORF1ab/nsp13140A140AgcTgcA3264B.1.1.70.000003
ORF1ab/nsp13140A140SGctTct179182All0.000034
ORF1ab/nsp13140A140SGCtAGt2182All0
ORF1ab/nsp13140A140SGCTAGC1182All0
ORF1ab/nsp13140A140delGCT---141141All0.000027
ORF1ab/nsp13140A140delGCT---8686B.1.1.70.000077
ORF1ab/nsp13140A140SGctTct7979AY.40.000123
ORF1ab/nsp13140A140VgCtgTt5959All0.000011
ORF1ab/nsp13140A140SGctTct5454B.10.000495
ORF1ab/nsp13140A140AgcTgcC5252B.1.438.21
ORF1ab/nsp13140A140TGctAct3839All0.000007
ORF1ab/nsp13140A140TGcTAcC139All0
ORF1ab/nsp13140A140AgcTgcC3131B.1.5770.021306
ORF1ab/nsp13140A140AgcTgcC3030B.1.5250.003395
ORF1ab/nsp13140A140AgcTgcC2728AY.40.000042
ORF1ab/nsp13140A140AgcTgcG128AY.40.000002
ORF1ab/nsp13140A140AgcTgcC2828AY.430.000124
ORF1ab/nsp13140A140AgcTgcC1719B.1.617.20.000064
ORF1ab/nsp13140A140AgcTgcA119B.1.617.20.000004
ORF1ab/nsp13140A140AgcTgcG119B.1.617.20.000004
ORF1ab/nsp13140A140AgcTgcA1718AY.1190.0006
ORF1ab/nsp13140A140AgcTgcC118AY.1190.000035
ORF1ab/nsp13140A140VgCtgTt1717B.1.177.820.008115
ORF1ab/nsp13140A140delGCT---1616B.1.1770.000211
ORF1ab/nsp13140A140AgcTgcC1515B.1.10.000272
ORF1ab/nsp13140A140SGctTct1010B.1.1.70.000009
ORF1ab/nsp13140A140TGctAct1010P.1.170.001618
ORF1ab/nsp13140A140SGctTct88B.400.002914
ORF1ab/nsp13140A140AgcTgcC77B.1.20.000062
ORF1ab/nsp13140A140AgcTgcA36B.10.000027
ORF1ab/nsp13140A140AgcTgcC36B.10.000027
ORF1ab/nsp13140A140TGctAct66B.1.1.70.000005
ORF1ab/nsp13140A140TGctAct66B.1.1600.000187
ORF1ab/nsp13140A140VgCtgTt66B.1.20.000053
ORF1ab/nsp13140A140VgCtgTt66B.1.4710.016393
ORF1ab/nsp13140A140delGCT---55AD.20.001095
ORF1ab/nsp13140A140DgCtgAt55All0.000001
ORF1ab/nsp13140A140AgcTgcC55AY.1020.000133
ORF1ab/nsp13140A140AgcTgcC55AY.1030.000031
ORF1ab/nsp13140A140AgcTgcC55B.1.1600.000156
ORF1ab/nsp13140A140delGCT---440.222222
ORF1ab/nsp13140A140GgCtgGt34All0.000001
ORF1ab/nsp13140A140GgCTgGC14All0
ORF1ab/nsp13140A140AgcTgcC44AY.250.000024
ORF1ab/nsp13140A140AgcTgcC44AY.260.000113
ORF1ab/nsp13140A140AgcTgcC44AY.39.10.000158
ORF1ab/nsp13140A140AgcTgcC44AY.4.20.000087
ORF1ab/nsp13140A140delGCT---44AZ.20.003284
ORF1ab/nsp13140A140delGCT---44B.1.10.000073
ORF1ab/nsp13140A140AgcTgcG44B.1.1770.000053
ORF1ab/nsp13140A140SGctTct44B.1.1770.000053
ORF1ab/nsp13140A140AgcTgcC44B.1.3510.000119
ORF1ab/nsp13140A140SGctTct44B.1.4290.000094
ORF1ab/nsp13140A140AgcTgcC44B.1.4380.026144
ORF1ab/nsp13140A140AgcTgcC33AY.440.000018
ORF1ab/nsp13140A140delGCT---33B.10.000027
ORF1ab/nsp13140A140VgCtgTt33B.10.000027
ORF1ab/nsp13140A140TGctAct33B.10.000027
ORF1ab/nsp13140A140AgcTgcC33B.1.36.160.004274
ORF1ab/nsp13140A140NGCtAAt220.111111
ORF1ab/nsp13140A140LGCtCTt220.111111
ORF1ab/nsp13140A140IGCtATt220.111111
ORF1ab/nsp13140A140HGCtCAt220.111111
ORF1ab/nsp13140A140LGCtCTt22All0
ORF1ab/nsp13140A140PGctCct22All0
ORF1ab/nsp13140A140IGCtATt22All0
ORF1ab/nsp13140A140HGCtCAt22All0
ORF1ab/nsp13140A140NGCtAAt22All0
ORF1ab/nsp13140A140AgcTgcC22AY.1180.000125
ORF1ab/nsp13140A140SGctTct22AY.260.000057
ORF1ab/nsp13140A140AgcTgcC22AY.330.000134
ORF1ab/nsp13140A140SGctTct22AY.430.000009
ORF1ab/nsp13140A140SGctTct22AY.440.000012
ORF1ab/nsp13140A140TGctAct22AY.670.000929
ORF1ab/nsp13140A140AgcTgcC22AY.9.10.000167
ORF1ab/nsp13140A140delGCT---22B.1.1.3060.000877
ORF1ab/nsp13140A140delGCT---22B.1.1.3150.016949
ORF1ab/nsp13140A140VgCtgTt22B.1.1.5190.000079
ORF1ab/nsp13140A140VgCtgTt22B.1.1.70.000002
ORF1ab/nsp13140A140PGctCct22B.1.1.70.000002
ORF1ab/nsp13140A140SGctTct22B.1.1600.000062
ORF1ab/nsp13140A140SGctTct22B.1.20.000018
ORF1ab/nsp13140A140VgCtgTt22B.1.2430.000139
ORF1ab/nsp13140A140AgcTgcC22B.1.3110.000549
ORF1ab/nsp13140A140VgCtgTt22B.1.360.000292
ORF1ab/nsp13140A140AgcTgcC22B.1.3960.001411
ORF1ab/nsp13140A140AgcTgcC22B.1.4290.000047
ORF1ab/nsp13140A140AgcTgcC12B.1.5260.000024
ORF1ab/nsp13140A140AgcTgcA12B.1.5260.000024
ORF1ab/nsp13140A140AgcTgcC12B.1.5950.000261
ORF1ab/nsp13140A140AgcTgcA12B.1.5950.000261
ORF1ab/nsp13140A140AgcTgcC22B.1.6190.001742
ORF1ab/nsp13140A140TGctAct12B.1.90.006173
ORF1ab/nsp13140A140TGcTAcC12B.1.90.006173
ORF1ab/nsp13140A140SGCtAGt12B.1.90.006173
ORF1ab/nsp13140A140GgCTgGC12B.1.90.006173
ORF1ab/nsp13140A140GgCtgGt12B.1.90.006173
ORF1ab/nsp13140A140SGCTAGC12B.1.90.006173
ORF1ab/nsp13140A140VgCtgTt22B.400.000729
ORF1ab/nsp13140A140AgcTgcC22D.20.00015
ORF1ab/nsp13140A140AgcTgcC12P.10.000016
ORF1ab/nsp13140A140AgcTgcG12P.10.000016
ORF1ab/nsp13140A140VgCtgTt22P.1.10.000635
ORF1ab/nsp13140A140SGctTct22P.1.70.000639
ORF1ab/nsp13140A140delGCT---22Q.10.000253
ORF1ab/nsp13140A140GgCtgGt110.055556
ORF1ab/nsp13140A140SGCtAGt110.055556
ORF1ab/nsp13140A140TGctAct110.055556
ORF1ab/nsp13140A140EgCTgAG11All0
ORF1ab/nsp13140A140AgcTgcC11AY.1000.000046
ORF1ab/nsp13140A140GgCtgGt11AY.1020.000027
ORF1ab/nsp13140A140VgCtgTt11AY.1130.000142
ORF1ab/nsp13140A140AgcTgcC11AY.1170.000085
ORF1ab/nsp13140A140VgCtgTt11AY.1190.000035
ORF1ab/nsp13140A140AgcTgcC11AY.1200.000037
ORF1ab/nsp13140A140AgcTgcC11AY.120.10.000321
ORF1ab/nsp13140A140AgcTgcC11AY.230.00007
ORF1ab/nsp13140A140delGCT---11AY.240.000431
ORF1ab/nsp13140A140SGctTct11AY.250.000006
ORF1ab/nsp13140A140VgCtgTt11AY.250.000006
ORF1ab/nsp13140A140AgcTgcC11AY.30.00001
ORF1ab/nsp13140A140TGctAct11AY.40.000002
ORF1ab/nsp13140A140DgCtgAt11AY.40.000002
ORF1ab/nsp13140A140delGCT---11AY.40.000002
ORF1ab/nsp13140A140VgCtgTt11AY.4.20.000022
ORF1ab/nsp13140A140AgcTgcC11AY.4.50.000107
ORF1ab/nsp13140A140delGCT---11AY.430.000004
ORF1ab/nsp13140A140AgcTgcC11AY.46.60.000072
ORF1ab/nsp13140A140AgcTgcC11AY.50.000021
ORF1ab/nsp13140A140AgcTgcC11AY.500.000799
ORF1ab/nsp13140A140AgcTgcC11AY.650.000533
ORF1ab/nsp13140A140TGctAct11AY.690.000187
ORF1ab/nsp13140A140AgcTgcC11AY.75.10.00018
ORF1ab/nsp13140A140AgcTgcC11AY.870.000833
ORF1ab/nsp13140A140SGctTct11AY.9.20.000037
ORF1ab/nsp13140A140AgcTgcC11AY.900.000684
ORF1ab/nsp13140A140AgcTgcC11AY.98.10.000048
ORF1ab/nsp13140A140VgCtgTt11B0.000128
ORF1ab/nsp13140A140AgcTgcA11B0.000128
ORF1ab/nsp13140A140DgCtgAt11B.10.000009
ORF1ab/nsp13140A140VgCtgTt11B.1.10.000018
ORF1ab/nsp13140A140SGctTct11B.1.10.000018
ORF1ab/nsp13140A140TGctAct11B.1.10.000018
ORF1ab/nsp13140A140VgCtgTt11B.1.1.2040.00304
ORF1ab/nsp13140A140SGctTct11B.1.1.2140.000055
ORF1ab/nsp13140A140VgCtgTt11B.1.1.2160.00089
ORF1ab/nsp13140A140delGCT---11B.1.1.2310.003096
ORF1ab/nsp13140A140AgcTgcC11B.1.1.2630.001558
ORF1ab/nsp13140A140delGCT---11B.1.1.3050.003861
ORF1ab/nsp13140A140AgcTgcC11B.1.1.3180.000302
ORF1ab/nsp13140A140TGctAct11B.1.1.3560.008547
ORF1ab/nsp13140A140AgcTgcC11B.1.1.3710.010417
ORF1ab/nsp13140A140TGctAct11B.1.1.390.00051
ORF1ab/nsp13140A140AgcTgcC11B.1.1.4200.001006
ORF1ab/nsp13140A140delGCT---11B.1.1.440.00241
ORF1ab/nsp13140A140delGCT---11B.1.1.510.001718
ORF1ab/nsp13140A140AgcTgcC11B.1.1.5190.00004
ORF1ab/nsp13140A140AgcTgcC11B.1.1.540.003021
ORF1ab/nsp13140A140DgCtgAt11B.1.1.70.000001
ORF1ab/nsp13140A140delGCT---11B.1.160.230.004831
ORF1ab/nsp13140A140VgCtgTt11B.1.177.540.000606
ORF1ab/nsp13140A140delGCT---11B.1.177.730.000566
ORF1ab/nsp13140A140delGCT---11B.1.177.830.001481
ORF1ab/nsp13140A140AgcTgcC11B.1.2210.000071
ORF1ab/nsp13140A140VgCtgTt11B.1.2210.000071
ORF1ab/nsp13140A140AgcTgcC11B.1.2320.000537
ORF1ab/nsp13140A140AgcTgcG11B.1.2340.000132
ORF1ab/nsp13140A140delGCT---11B.1.2420.018868
ORF1ab/nsp13140A140AgcTgcC11B.1.2580.000067
ORF1ab/nsp13140A140SGctTct11B.1.2580.000067
ORF1ab/nsp13140A140AgcTgcC11B.1.258.30.001675
ORF1ab/nsp13140A140VgCtgTt11B.1.3240.001605
ORF1ab/nsp13140A140DgCtgAt11B.1.3360.002439
ORF1ab/nsp13140A140VgCtgTt11B.1.3360.002439
ORF1ab/nsp13140A140SGctTct11B.1.360.000146
ORF1ab/nsp13140A140AgcTgcC11B.1.360.000146
ORF1ab/nsp13140A140delGCT---11B.1.360.000146
ORF1ab/nsp13140A140EgCTgAG11B.1.36.10.00114
ORF1ab/nsp13140A140TGctAct11B.1.3910.001127
ORF1ab/nsp13140A140AgcTgcC11B.1.4270.00005
ORF1ab/nsp13140A140AgcTgcC11B.1.4390.005917
ORF1ab/nsp13140A140AgcTgcC11B.1.4690.00361
ORF1ab/nsp13140A140TGctAct11B.1.5090.000866
ORF1ab/nsp13140A140AgcTgcA11B.1.5670.003333
ORF1ab/nsp13140A140AgcTgcC11B.1.575.10.002439
ORF1ab/nsp13140A140AgcTgcA11B.1.5820.000491
ORF1ab/nsp13140A140AgcTgcC11B.1.6060.006024
ORF1ab/nsp13140A140delGCT---11B.1.617.10.000129
ORF1ab/nsp13140A140TGctAct11B.1.617.20.000004
ORF1ab/nsp13140A140VgCtgTt11B.1.617.20.000004
ORF1ab/nsp13140A140SGctTct11B.1.617.20.000004
ORF1ab/nsp13140A140AgcTgcC11B.1.6200.000946
ORF1ab/nsp13140A140AgcTgcC11B.1.90.006173
ORF1ab/nsp13140A140VgCtgTt11B.1.90.006173
ORF1ab/nsp13140A140AgcTgcA11B.30.000831
ORF1ab/nsp13140A140AgcTgcC11C.140.004329
ORF1ab/nsp13140A140DgCtgAt11D.20.000075
ORF1ab/nsp13140A140VgCtgTt11D.20.000075
ORF1ab/nsp13140A140SGctTct11P.10.000016
ORF1ab/nsp13140A140TGctAct11P.10.000016
ORF1ab/nsp13140A140AgcTgcC11P.1.140.000048
ORF1ab/nsp13140A140AgcTgcC11P.1.170.000162
ORF1ab/nsp13140A140AgcTgcC11P.30.001595
ORF1ab/nsp13140A140AgcTgcC11Q.20.000613