CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 137 & Codon = acT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13137T137TT5461TsynacGacT19096177950.93187116645-16647

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13137T137TacGacT1779519096All0.003404
ORF1ab/nsp13137T137TacGacT1325213252D.20.994447
ORF1ab/nsp13137T137TacGacT468864B.1.1.70.000419
ORF1ab/nsp13137T137TacGacT466466AY.1200.017325
ORF1ab/nsp13137T137TacGacT339367B.10.003105
ORF1ab/nsp13137T137TacGacT278361AY.40.000433
ORF1ab/nsp13137T137TacGacT268270AY.1030.001664
ORF1ab/nsp13137T137TacGacT254270AY.430.001125
ORF1ab/nsp13137T137TacGacT225249B.1.617.20.000847
ORF1ab/nsp13137T137TacGacT215221B.1.10.0039
ORF1ab/nsp13137T137TacGacT188197B.1.2430.013082
ORF1ab/nsp13137T137TacGacT181181B.1.1.3480.144108
ORF1ab/nsp13137T137TacGacT123165AY.440.000749
ORF1ab/nsp13137T137TacGacT289AY.4.50.000215
ORF1ab/nsp13137T137TacGacT8487AY.390.002076
ORF1ab/nsp13137T137TacGacT7082B.1.20.000616
ORF1ab/nsp13137T137TacGacT5375AY.250.000319
ORF1ab/nsp13137T137TacGacT2466AY.30.000239
ORF1ab/nsp13137T137TacGacT5959B.1.5631
ORF1ab/nsp13137T137TacGacT4957B.1.4290.001153
ORF1ab/nsp13137T137TacGacT5556B.1.1.700.018759
ORF1ab/nsp13137T137TacGacT1756B.1.1600.00053
ORF1ab/nsp13137T137TacGacT5050B.1.177.330.082237
ORF1ab/nsp13137T137TacGacT3441B.1.1770.000448
ORF1ab/nsp13137T137TacGacT3537B.1.360.005107
ORF1ab/nsp13137T137TacGacT3136AY.1020.000822
ORF1ab/nsp13137T137TacGacT135AY.20.000356
ORF1ab/nsp13137T137TacGacT3334P.10.00052
ORF1ab/nsp13137T137TacGacT3232B.1.1.250.018192
ORF1ab/nsp13137T137TacGacT3030B.1.6320.201342
ORF1ab/nsp13137T137TacGacT2628B.1.3510.000773
ORF1ab/nsp13137T137TacGacT2728B.1.4270.001363
ORF1ab/nsp13137T137TacGacT2526AY.200.000972
ORF1ab/nsp13137T137TacGacT1225AY.1190.000424
ORF1ab/nsp13137T137TacGacT2525B.1.1.2220.0051
ORF1ab/nsp13137T137TacGacT2224AY.290.000347
ORF1ab/nsp13137T137TacGacT624AY.420.000241
ORF1ab/nsp13137T137TacGacT2024AY.50.000413
ORF1ab/nsp13137T137TacGacT2324P.1.170.00372
ORF1ab/nsp13137T137TacGacT2222B.1.1.3110.00788
ORF1ab/nsp13137T137TacGacT821AY.46.60.000578
ORF1ab/nsp13137T137TacGacT2021C.370.002321
ORF1ab/nsp13137T137TacGacT1818B.1.1.2410.037267
ORF1ab/nsp13137T137TacGacT1818B.1.5510.023226
ORF1ab/nsp13137T137TacGacT1717B.1.5260.0004
ORF1ab/nsp13137T137TacGacT1617B.1.5960.001394
ORF1ab/nsp13137T137TacGacT317P.1.150.000697
ORF1ab/nsp13137T137TacGacT1415AY.980.001106
ORF1ab/nsp13137T137TacGacT315B.1.1.2140.000166
ORF1ab/nsp13137T137TacGacT1515B.1.2390.018315
ORF1ab/nsp13137T137TacGacT1515P.1.10.004765
ORF1ab/nsp13137T137TacGacT1414AY.4.40.005728
ORF1ab/nsp13137T137TacGacT614B.1.2580.000399
ORF1ab/nsp13137T137TacGacT1313B.1.1.5250.071038
ORF1ab/nsp13137T137TacGacT1313P.1.140.000621
ORF1ab/nsp13137T137TacGacT1012AY.4.20.000217
ORF1ab/nsp13137T137TacGacT912AY.470.00028
ORF1ab/nsp13137T137TacGacT1212B.1.1.5190.000477
ORF1ab/nsp13137T137TacGacT1111AY.110.014726
ORF1ab/nsp13137T137TacGacT1011AY.260.000283
ORF1ab/nsp13137T137TacGacT1111B.1.1.1530.012048
ORF1ab/nsp13137T137TacGacT1010B.1.4590.040816
ORF1ab/nsp13137T137TacGacT99AY.1170.000761
ORF1ab/nsp13137T137TacGacT99AY.120.10.002889
ORF1ab/nsp13137T137TacGacT89AY.46.50.001587
ORF1ab/nsp13137T137TacGacT99AY.90.000608
ORF1ab/nsp13137T137TacGacT29B.1.6210.000177
ORF1ab/nsp13137T137TacGacT88AY.610.000838
ORF1ab/nsp13137T137TacGacT78AY.99.20.000645
ORF1ab/nsp13137T137TacGacT88B.1.1990.033058
ORF1ab/nsp13137T137TacGacT88B.1.810.170213
ORF1ab/nsp13137T137TacGacT77AY.1000.000322
ORF1ab/nsp13137T137TacGacT77AY.140.000616
ORF1ab/nsp13137T137TacGacT77B.1.110.30.005029
ORF1ab/nsp13137T137TacGacT77B.1.3110.001922
ORF1ab/nsp13137T137TacGacT77B.1.5970.032407
ORF1ab/nsp13137T137TacGacT77P.20.001306
ORF1ab/nsp13137T137TacGacT26AY.230.000139
ORF1ab/nsp13137T137TacGacT66AY.3.10.000512
ORF1ab/nsp13137T137TacGacT66AY.330.000401
ORF1ab/nsp13137T137TacGacT56AY.9.10.000419
ORF1ab/nsp13137T137TacGacT66B.1.1.3040.016854
ORF1ab/nsp13137T137TacGacT16B.1.2210.000071
ORF1ab/nsp13137T137TacGacT66B.1.617.10.000774
ORF1ab/nsp13137T137TacGacT55AY.1130.000712
ORF1ab/nsp13137T137TacGacT55AY.1160.001434
ORF1ab/nsp13137T137TacGacT55AY.116.10.001557
ORF1ab/nsp13137T137TacGacT55AY.170.040984
ORF1ab/nsp13137T137TacGacT55AY.840.002187
ORF1ab/nsp13137T137TacGacT55B.1.1.1610.017668
ORF1ab/nsp13137T137TacGacT55B.1.6280.001762
ORF1ab/nsp13137T137TacGacT55B.1.6370.000365
ORF1ab/nsp13137T137TacGacT44AY.1210.000541
ORF1ab/nsp13137T137TacGacT44AY.450.000487
ORF1ab/nsp13137T137TacGacT44AY.98.10.000194
ORF1ab/nsp13137T137TacGacT44B.1.1.2690.005413
ORF1ab/nsp13137T137TacGacT44B.1.1700.017241
ORF1ab/nsp13137T137TacGacT44B.1.3600.050633
ORF1ab/nsp13137T137TacGacT34B.1.5250.000339
ORF1ab/nsp13137T137TacGacT33AE.20.176471
ORF1ab/nsp13137T137TacGacT33AU.20.007264
ORF1ab/nsp13137T137TacGacT13AY.340.000097
ORF1ab/nsp13137T137TacGacT33AY.70.000588
ORF1ab/nsp13137T137TacGacT33AY.7.10.000338
ORF1ab/nsp13137T137TacGacT33AY.750.000168
ORF1ab/nsp13137T137TacGacT33AY.850.001282
ORF1ab/nsp13137T137TacGacT13AY.9.20.000037
ORF1ab/nsp13137T137TacGacT33AY.920.000862
ORF1ab/nsp13137T137TacGacT23B0.000256
ORF1ab/nsp13137T137TacGacT33B.1.1.1710.011029
ORF1ab/nsp13137T137TacGacT33B.1.1.2070.003546
ORF1ab/nsp13137T137TacGacT13B.1.1.280.000311
ORF1ab/nsp13137T137TacGacT33B.1.1.2840.000322
ORF1ab/nsp13137T137TacGacT13B.1.1.390.00051
ORF1ab/nsp13137T137TacGacT33B.1.1.630.001157
ORF1ab/nsp13137T137TacGacT33B.1.1310.026316
ORF1ab/nsp13137T137TacGacT33B.1.2400.000647
ORF1ab/nsp13137T137TacGacT13B.1.2650.001271
ORF1ab/nsp13137T137TacGacT33B.1.3200.003736
ORF1ab/nsp13137T137TacGacT33B.1.36.10.003421
ORF1ab/nsp13137T137TacGacT33B.1.36.80.003
ORF1ab/nsp13137T137TacGacT23B.1.438.10.000215
ORF1ab/nsp13137T137TacGacT33B.30.002492
ORF1ab/nsp13137T137TacGacT13P.1.100.000269
ORF1ab/nsp13137T137TacGacT22A.2.50.000998
ORF1ab/nsp13137T137TacGacT22AY.130.000322
ORF1ab/nsp13137T137TacGacT22AY.7.20.001119
ORF1ab/nsp13137T137TacGacT22AY.75.10.000361
ORF1ab/nsp13137T137TacGacT12AY.99.10.001553
ORF1ab/nsp13137T137TacGacT22B.1.1.1890.003026
ORF1ab/nsp13137T137TacGacT22B.1.1.2160.001781
ORF1ab/nsp13137T137TacGacT12B.1.1.3060.000438
ORF1ab/nsp13137T137TacGacT22B.1.1.3170.000823
ORF1ab/nsp13137T137TacGacT22B.1.1.3180.000604
ORF1ab/nsp13137T137TacGacT22B.1.1.4480.004065
ORF1ab/nsp13137T137TacGacT22B.1.1.5210.010695
ORF1ab/nsp13137T137TacGacT22B.1.160.270.030303
ORF1ab/nsp13137T137TacGacT22B.1.2340.000264
ORF1ab/nsp13137T137TacGacT22B.1.2370.00995
ORF1ab/nsp13137T137TacGacT22B.1.4040.002604
ORF1ab/nsp13137T137TacGacT22B.1.4560.006536
ORF1ab/nsp13137T137TacGacT22B.1.4970.00063
ORF1ab/nsp13137T137TacGacT22B.1.5400.019417
ORF1ab/nsp13137T137TacGacT22B.1.5770.001375
ORF1ab/nsp13137T137TacGacT22B.1.5880.00182
ORF1ab/nsp13137T137TacGacT22B.1.6180.008065
ORF1ab/nsp13137T137TacGacT22B.1.910.004149
ORF1ab/nsp13137T137TacGacT22B.1.930.001867
ORF1ab/nsp13137T137TacGacT22C.360.001821
ORF1ab/nsp13137T137TacGacT22P.1.70.000639
ORF1ab/nsp13137T137TacGacT22Q.30.00029
ORF1ab/nsp13137T137TacGacT11A0.000387
ORF1ab/nsp13137T137TacGacT11A.270.001656
ORF1ab/nsp13137T137TacGacT11AY.1010.00049
ORF1ab/nsp13137T137TacGacT11AY.1110.000183
ORF1ab/nsp13137T137TacGacT11AY.1180.000063
ORF1ab/nsp13137T137TacGacT11AY.120.000316
ORF1ab/nsp13137T137TacGacT11AY.120.20.001285
ORF1ab/nsp13137T137TacGacT11AY.16.10.00047
ORF1ab/nsp13137T137TacGacT11AY.240.000431
ORF1ab/nsp13137T137TacGacT11AY.270.000065
ORF1ab/nsp13137T137TacGacT11AY.280.00189
ORF1ab/nsp13137T137TacGacT11AY.320.000532
ORF1ab/nsp13137T137TacGacT11AY.34.10.00051
ORF1ab/nsp13137T137TacGacT11AY.350.000233
ORF1ab/nsp13137T137TacGacT11AY.400.000964
ORF1ab/nsp13137T137TacGacT11AY.46.20.000635
ORF1ab/nsp13137T137TacGacT11AY.5.40.000277
ORF1ab/nsp13137T137TacGacT11AY.520.000814
ORF1ab/nsp13137T137TacGacT11AY.530.000288
ORF1ab/nsp13137T137TacGacT11AY.540.000095
ORF1ab/nsp13137T137TacGacT11AY.570.000656
ORF1ab/nsp13137T137TacGacT11AY.590.00053
ORF1ab/nsp13137T137TacGacT11AY.60.000041
ORF1ab/nsp13137T137TacGacT11AY.600.000938
ORF1ab/nsp13137T137TacGacT11AY.620.000436
ORF1ab/nsp13137T137TacGacT11AY.730.000665
ORF1ab/nsp13137T137TacGacT11AY.80.000606
ORF1ab/nsp13137T137TacGacT11B.1.1.10.000327
ORF1ab/nsp13137T137TacGacT11B.1.1.1280.007092
ORF1ab/nsp13137T137TacGacT11B.1.1.140.017241
ORF1ab/nsp13137T137TacGacT11B.1.1.1690.018182
ORF1ab/nsp13137T137TacGacT11B.1.1.2770.000759
ORF1ab/nsp13137T137TacGacT11B.1.1.2980.000862
ORF1ab/nsp13137T137TacGacT11B.1.1.330.000421
ORF1ab/nsp13137T137TacGacT11B.1.1.3760.005952
ORF1ab/nsp13137T137TacGacT11B.1.1.3970.002252
ORF1ab/nsp13137T137TacGacT11B.1.1.4040.015873
ORF1ab/nsp13137T137TacGacT11B.1.1.4130.006897
ORF1ab/nsp13137T137TacGacT11B.1.1.4340.000349
ORF1ab/nsp13137T137TacGacT11B.1.1110.001175
ORF1ab/nsp13137T137TacGacT11B.1.1570.002985
ORF1ab/nsp13137T137TacGacT11B.1.160.160.000929
ORF1ab/nsp13137T137TacGacT11B.1.177.100.000878
ORF1ab/nsp13137T137TacGacT11B.1.177.210.000076
ORF1ab/nsp13137T137TacGacT11B.1.177.460.000918
ORF1ab/nsp13137T137TacGacT11B.1.177.560.000668
ORF1ab/nsp13137T137TacGacT11B.1.177.580.001332
ORF1ab/nsp13137T137TacGacT11B.1.177.600.000218
ORF1ab/nsp13137T137TacGacT11B.1.1950.005025
ORF1ab/nsp13137T137TacGacT11B.1.2060.000816
ORF1ab/nsp13137T137TacGacT11B.1.214.20.0006
ORF1ab/nsp13137T137TacGacT11B.1.2360.002053
ORF1ab/nsp13137T137TacGacT11B.1.258.120.007874
ORF1ab/nsp13137T137TacGacT11B.1.258.170.000104
ORF1ab/nsp13137T137TacGacT11B.1.2790.000514
ORF1ab/nsp13137T137TacGacT11B.1.351.30.000876
ORF1ab/nsp13137T137TacGacT11B.1.36.180.00042
ORF1ab/nsp13137T137TacGacT11B.1.3620.001541
ORF1ab/nsp13137T137TacGacT11B.1.3660.004878
ORF1ab/nsp13137T137TacGacT11B.1.3710.001122
ORF1ab/nsp13137T137TacGacT11B.1.3750.00082
ORF1ab/nsp13137T137TacGacT11B.1.3950.007042
ORF1ab/nsp13137T137TacGacT11B.1.3960.000706
ORF1ab/nsp13137T137TacGacT11B.1.3970.004854
ORF1ab/nsp13137T137TacGacT11B.1.3990.001934
ORF1ab/nsp13137T137TacGacT11B.1.4020.009804
ORF1ab/nsp13137T137TacGacT11B.1.4220.000812
ORF1ab/nsp13137T137TacGacT11B.1.466.20.000391
ORF1ab/nsp13137T137TacGacT11B.1.4990.00105
ORF1ab/nsp13137T137TacGacT11B.1.5200.021739
ORF1ab/nsp13137T137TacGacT11B.1.5680.001111
ORF1ab/nsp13137T137TacGacT11B.1.5730.006098
ORF1ab/nsp13137T137TacGacT11B.1.5820.000491
ORF1ab/nsp13137T137TacGacT11B.1.5950.000261
ORF1ab/nsp13137T137TacGacT11B.1.6100.003546
ORF1ab/nsp13137T137TacGacT11B.1.6360.006711
ORF1ab/nsp13137T137TacGacT11C.10.002392
ORF1ab/nsp13137T137TacGacT11C.350.000774
ORF1ab/nsp13137T137TacGacT11C.36.30.000567
ORF1ab/nsp13137T137TacGacT11N.30.005814
ORF1ab/nsp13137T137TacGacT11P.1.120.000484
ORF1ab/nsp13137T137TacGacT11P.1.130.000898
ORF1ab/nsp13137T137TacGacT11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.