CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 137 & Codon = acA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13137T137TT5461TsynacGacA1909611700.061269416645-16647

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13137T137TacGacA117019096All0.000224
ORF1ab/nsp13137T137TacGacA394864B.1.1.70.000353
ORF1ab/nsp13137T137TacGacA25367B.10.000229
ORF1ab/nsp13137T137TacGacA79361AY.40.000123
ORF1ab/nsp13137T137TacGacA2270AY.1030.000012
ORF1ab/nsp13137T137TacGacA16270AY.430.000071
ORF1ab/nsp13137T137TacGacA19249B.1.617.20.000072
ORF1ab/nsp13137T137TacGacA6221B.1.10.000109
ORF1ab/nsp13137T137TacGacA9197B.1.2430.000626
ORF1ab/nsp13137T137TacGacA38165AY.440.000231
ORF1ab/nsp13137T137TacGacA121121B.1.3670.09588
ORF1ab/nsp13137T137TacGacA8789AY.4.50.009352
ORF1ab/nsp13137T137TacGacA387AY.390.000074
ORF1ab/nsp13137T137TacGacA1282B.1.20.000106
ORF1ab/nsp13137T137TacGacA2275AY.250.000132
ORF1ab/nsp13137T137TacGacA4266AY.30.000418
ORF1ab/nsp13137T137TacGacA857B.1.4290.000188
ORF1ab/nsp13137T137TacGacA156B.1.1.700.000341
ORF1ab/nsp13137T137TacGacA3856B.1.1600.001185
ORF1ab/nsp13137T137TacGacA741B.1.1770.000092
ORF1ab/nsp13137T137TacGacA4040B.1.5750.012136
ORF1ab/nsp13137T137TacGacA237B.1.360.000292
ORF1ab/nsp13137T137TacGacA536AY.1020.000133
ORF1ab/nsp13137T137TacGacA3435AY.20.012108
ORF1ab/nsp13137T137TacGacA134P.10.000016
ORF1ab/nsp13137T137TacGacA228B.1.3510.000059
ORF1ab/nsp13137T137TacGacA128B.1.4270.00005
ORF1ab/nsp13137T137TacGacA126AY.200.000039
ORF1ab/nsp13137T137TacGacA1325AY.1190.000459
ORF1ab/nsp13137T137TacGacA224AY.290.000032
ORF1ab/nsp13137T137TacGacA1824AY.420.000724
ORF1ab/nsp13137T137TacGacA424AY.50.000083
ORF1ab/nsp13137T137TacGacA124P.1.170.000162
ORF1ab/nsp13137T137TacGacA1321AY.46.60.000939
ORF1ab/nsp13137T137TacGacA121C.370.000116
ORF1ab/nsp13137T137TacGacA117B.1.5960.000087
ORF1ab/nsp13137T137TacGacA1417P.1.150.003253
ORF1ab/nsp13137T137TacGacA115AY.980.000079
ORF1ab/nsp13137T137TacGacA1215B.1.1.2140.000665
ORF1ab/nsp13137T137TacGacA814B.1.2580.000532
ORF1ab/nsp13137T137TacGacA112AY.4.20.000022
ORF1ab/nsp13137T137TacGacA312AY.470.000093
ORF1ab/nsp13137T137TacGacA19AY.46.50.000198
ORF1ab/nsp13137T137TacGacA59B.1.6210.000443
ORF1ab/nsp13137T137TacGacA18AY.99.20.000092
ORF1ab/nsp13137T137TacGacA46AY.230.000279
ORF1ab/nsp13137T137TacGacA16AY.9.10.000084
ORF1ab/nsp13137T137TacGacA66B.1.1.1570.005479
ORF1ab/nsp13137T137TacGacA56B.1.2210.000355
ORF1ab/nsp13137T137TacGacA14B.1.5250.000113
ORF1ab/nsp13137T137TacGacA23AY.340.000194
ORF1ab/nsp13137T137TacGacA23AY.9.20.000073
ORF1ab/nsp13137T137TacGacA33AY.900.002053
ORF1ab/nsp13137T137TacGacA13B0.000128
ORF1ab/nsp13137T137TacGacA13B.1.1.280.000311
ORF1ab/nsp13137T137TacGacA23B.1.1.390.001019
ORF1ab/nsp13137T137TacGacA23B.1.2650.002541
ORF1ab/nsp13137T137TacGacA13B.1.438.10.000107
ORF1ab/nsp13137T137TacGacA23P.1.100.000539
ORF1ab/nsp13137T137TacGacA22AY.480.00093
ORF1ab/nsp13137T137TacGacA22AY.710.00095
ORF1ab/nsp13137T137TacGacA12AY.99.10.001553
ORF1ab/nsp13137T137TacGacA12B.1.1.3060.000438
ORF1ab/nsp13137T137TacGacA22B.1.5490.014388
ORF1ab/nsp13137T137TacGacA11A.2.40.003367
ORF1ab/nsp13137T137TacGacA11AY.1100.000113
ORF1ab/nsp13137T137TacGacA11AY.1140.000231
ORF1ab/nsp13137T137TacGacA11AY.4.2.10.000149
ORF1ab/nsp13137T137TacGacA11AY.650.000533
ORF1ab/nsp13137T137TacGacA11B.1.177.160.000664
ORF1ab/nsp13137T137TacGacA11B.1.177.60.000977
ORF1ab/nsp13137T137TacGacA11B.1.258.220.002667
ORF1ab/nsp13137T137TacGacA11B.1.351.20.000303
ORF1ab/nsp13137T137TacGacA11B.1.4010.008197
ORF1ab/nsp13137T137TacGacA11B.1.5640.000426
ORF1ab/nsp13137T137TacGacA11C.170.055556
ORF1ab/nsp13137T137TacGacA11C.36.20.034483
ORF1ab/nsp13137T137TacGacA11C.37.10.002618
ORF1ab/nsp13137T137TacGacA11P.1.160.000374

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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