CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 125

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13125T125AT5449AnonsynAccGcc18811881116609-16611
ORF1ab/nsp13125T125TT5449TsynacCacT11646410.55068716609-16611
ORF1ab/nsp13125T125TT5449TsynacCacA11645210.44759416609-16611
ORF1ab/nsp13125T125TT5449TsynacCacG116420.0017182116609-16611
ORF1ab/nsp13125T125delT5449deldelACC---204204116609-16611
ORF1ab/nsp13125T125IT5449InonsynaCcaTc192192116609-16611
ORF1ab/nsp13125T125NT5449NnonsynaCcaAc156156116609-16611
ORF1ab/nsp13125T125ST5449SnonsynAccTcc650.83333316609-16611
ORF1ab/nsp13125T125ST5449SnonsynaCcaGc610.16666716609-16611
ORF1ab/nsp13125T125del1T5449del1delAcCGc-520.416609-16611
ORF1ab/nsp13125T125del1T5449del1delACC-NN520.416609-16611
ORF1ab/nsp13125T125del1T5449del1delaCca-c510.216609-16611
ORF1ab/nsp13125T125PT5449PnonsynAccCcc430.7516609-16611
ORF1ab/nsp13125T125del2T5449del2delaCCa--420.516609-16611
ORF1ab/nsp13125T125del2T5449del2delACC--N420.516609-16611
ORF1ab/nsp13125T125PT5449PnonsynAcCCcT410.2516609-16611
ORF1ab/nsp13125T125CT5449CnonsynACCTGT11116609-16611
ORF1ab/nsp13125T125MT5449MnonsynaCCaTG11116609-16611
ORF1ab/nsp13125T125VT5449VnonsynACcGTc11116609-16611
ORF1ab/nsp13125T125HT5449HnonsynACcCAc11116609-16611

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13125T125AAccGcc18811881All0.00036
ORF1ab/nsp13125T125AAccGcc18621862B.1.1.70.001667
ORF1ab/nsp13125T125TacCacT6411164All0.000123
ORF1ab/nsp13125T125TacCacA5211164All0.0001
ORF1ab/nsp13125T125TacCacG21164All0
ORF1ab/nsp13125T125TacCacA250333AY.40.000389
ORF1ab/nsp13125T125TacCacT83333AY.40.000129
ORF1ab/nsp13125T125TacCacA158256B.1.1.70.000141
ORF1ab/nsp13125T125TacCacT98256B.1.1.70.000088
ORF1ab/nsp13125T125delACC---204204All0.000039
ORF1ab/nsp13125T125IaCcaTc192192All0.000037
ORF1ab/nsp13125T125TacCacT156158AY.1030.000969
ORF1ab/nsp13125T125TacCacA2158AY.1030.000012
ORF1ab/nsp13125T125NaCcaAc156156All0.00003
ORF1ab/nsp13125T125delACC---131131B.1.1.70.000117
ORF1ab/nsp13125T125IaCcaTc6767B.1.1.70.00006
ORF1ab/nsp13125T125NaCcaAc5858C.40.58
ORF1ab/nsp13125T125NaCcaAc5757AY.40.000089
ORF1ab/nsp13125T125TacCacA2739B.1.617.20.000102
ORF1ab/nsp13125T125TacCacT1239B.1.617.20.000045
ORF1ab/nsp13125T125TacCacT3437B.10.000311
ORF1ab/nsp13125T125TacCacA337B.10.000027
ORF1ab/nsp13125T125TacCacT3232AY.46.60.002311
ORF1ab/nsp13125T125IaCcaTc3131B.1.5260.000729
ORF1ab/nsp13125T125TacCacT1823AY.430.00008
ORF1ab/nsp13125T125TacCacA523AY.430.000022
ORF1ab/nsp13125T125TacCacT1923B.1.20.000167
ORF1ab/nsp13125T125TacCacA423B.1.20.000035
ORF1ab/nsp13125T125delACC---2020B.1.1770.000263
ORF1ab/nsp13125T125TacCacA1218P.10.000189
ORF1ab/nsp13125T125TacCacT618P.10.000095
ORF1ab/nsp13125T125TacCacT1616AY.470.000498
ORF1ab/nsp13125T125TacCacT1112AY.200.000428
ORF1ab/nsp13125T125TacCacA112AY.200.000039
ORF1ab/nsp13125T125TacCacT1212B.1.1.5190.000477
ORF1ab/nsp13125T125TacCacT811AY.250.000048
ORF1ab/nsp13125T125TacCacA311AY.250.000018
ORF1ab/nsp13125T125NaCcaAc1111B.1.617.20.000041
ORF1ab/nsp13125T125TacCacT710AY.440.000043
ORF1ab/nsp13125T125TacCacA310AY.440.000018
ORF1ab/nsp13125T125TacCacA1010AY.730.006653
ORF1ab/nsp13125T125IaCcaTc1010B.1.20.000088
ORF1ab/nsp13125T125NaCcaAc99B.1.1.70.000008
ORF1ab/nsp13125T125IaCcaTc99B.1.1770.000119
ORF1ab/nsp13125T125TacCacT99B.1.177.870.00655
ORF1ab/nsp13125T125delACC---88B.1.10.000145
ORF1ab/nsp13125T125TacCacT67B.1.2210.000426
ORF1ab/nsp13125T125TacCacA17B.1.2210.000071
ORF1ab/nsp13125T125TacCacA77B.1.5260.000165
ORF1ab/nsp13125T125IaCcaTc77C.340.259259
ORF1ab/nsp13125T125SAccTcc56All0.000001
ORF1ab/nsp13125T125SaCcaGc16All0
ORF1ab/nsp13125T125TacCacT46AY.1020.000106
ORF1ab/nsp13125T125TacCacA26AY.1020.000053
ORF1ab/nsp13125T125TacCacT56AY.290.000079
ORF1ab/nsp13125T125TacCacA16AY.290.000016
ORF1ab/nsp13125T125IaCcaTc66AY.40.000009
ORF1ab/nsp13125T125IaCcaTc66AY.440.000037
ORF1ab/nsp13125T125TacCacT56B.1.10.000091
ORF1ab/nsp13125T125TacCacG16B.1.10.000018
ORF1ab/nsp13125T125AAccGcc66B.1.2580.000399
ORF1ab/nsp13125T125TacCacT66B.1.3670.004754
ORF1ab/nsp13125T125TacCacA66C.36.30.003403
ORF1ab/nsp13125T125delACC---55AD.20.001095
ORF1ab/nsp13125T125del1ACC-NN25All0
ORF1ab/nsp13125T125del1AcCGc-25All0
ORF1ab/nsp13125T125del1aCca-c15All0
ORF1ab/nsp13125T125TacCacT55AY.4.20.000108
ORF1ab/nsp13125T125delACC---55AZ.20.004105
ORF1ab/nsp13125T125TacCacT55B.1.177.70.000824
ORF1ab/nsp13125T125TacCacT45B.1.2430.000278
ORF1ab/nsp13125T125TacCacA15B.1.2430.00007
ORF1ab/nsp13125T125TacCacT55B.1.4970.001574
ORF1ab/nsp13125T125TacCacT55C.370.00058
ORF1ab/nsp13125T125delACC---440.222222
ORF1ab/nsp13125T125PAccCcc34All0.000001
ORF1ab/nsp13125T125del2ACC--N24All0
ORF1ab/nsp13125T125del2aCCa--24All0
ORF1ab/nsp13125T125PAcCCcT14All0
ORF1ab/nsp13125T125TacCacA34AY.30.00003
ORF1ab/nsp13125T125TacCacT14AY.30.00001
ORF1ab/nsp13125T125IaCcaTc44AY.4.20.000087
ORF1ab/nsp13125T125IaCcaTc44B.10.000037
ORF1ab/nsp13125T125NaCcaAc44B.1.1.10.001307
ORF1ab/nsp13125T125TacCacA24B.1.1.3060.000877
ORF1ab/nsp13125T125TacCacT14B.1.1.3060.000438
ORF1ab/nsp13125T125TacCacG14B.1.1.3060.000438
ORF1ab/nsp13125T125AAccGcc44Q.40.001819
ORF1ab/nsp13125T125TacCacT33AY.1000.000138
ORF1ab/nsp13125T125IaCcaTc33AY.1030.000019
ORF1ab/nsp13125T125NaCcaAc33AY.250.000018
ORF1ab/nsp13125T125IaCcaTc33AY.260.000085
ORF1ab/nsp13125T125TacCacA23AY.260.000057
ORF1ab/nsp13125T125TacCacT13AY.260.000028
ORF1ab/nsp13125T125TacCacT23AY.90.000135
ORF1ab/nsp13125T125TacCacA13AY.90.000068
ORF1ab/nsp13125T125delACC---33B.10.000027
ORF1ab/nsp13125T125IaCcaTc33B.1.1.630.001157
ORF1ab/nsp13125T125TacCacT23B.1.3510.000059
ORF1ab/nsp13125T125TacCacA13B.1.3510.00003
ORF1ab/nsp13125T125TacCacT23B.1.6230.001073
ORF1ab/nsp13125T125TacCacA13B.1.6230.000536
ORF1ab/nsp13125T125IaCcaTc33D.20.000225
ORF1ab/nsp13125T125TacCacT33N.50.0053
ORF1ab/nsp13125T125delACC---33Q.10.000379
ORF1ab/nsp13125T125del2aCCa--220.111111
ORF1ab/nsp13125T125del1AcCGc-220.111111
ORF1ab/nsp13125T125IaCcaTc22AY.1210.000271
ORF1ab/nsp13125T125PAccCcc12AY.250.000006
ORF1ab/nsp13125T125PAcCCcT12AY.250.000006
ORF1ab/nsp13125T125TacCacA22AY.4.50.000215
ORF1ab/nsp13125T125IaCcaTc22AY.420.00008
ORF1ab/nsp13125T125TacCacA22AY.420.00008
ORF1ab/nsp13125T125IaCcaTc22AY.430.000009
ORF1ab/nsp13125T125TacCacA22AY.5.30.000675
ORF1ab/nsp13125T125TacCacT22AY.540.000191
ORF1ab/nsp13125T125TacCacT22AY.630.000774
ORF1ab/nsp13125T125TacCacA22AY.9.20.000073
ORF1ab/nsp13125T125NaCcaAc22AY.980.000158
ORF1ab/nsp13125T125IaCcaTc22B.1.10.000036
ORF1ab/nsp13125T125delACC---22B.1.1.3150.016949
ORF1ab/nsp13125T125IaCcaTc22B.1.1.4340.000697
ORF1ab/nsp13125T125delACC---22B.1.1.440.004819
ORF1ab/nsp13125T125TacCacT22B.1.1.4860.003155
ORF1ab/nsp13125T125del2ACC--N22B.1.1.70.000002
ORF1ab/nsp13125T125TacCacT22B.1.160.250.022222
ORF1ab/nsp13125T125TacCacT12B.1.1770.000013
ORF1ab/nsp13125T125TacCacA12B.1.1770.000013
ORF1ab/nsp13125T125TacCacT22B.1.177.860.000367
ORF1ab/nsp13125T125NaCcaAc22B.1.20.000018
ORF1ab/nsp13125T125IaCcaTc22B.1.3510.000059
ORF1ab/nsp13125T125IaCcaTc22B.1.36.360.001204
ORF1ab/nsp13125T125TacCacT22B.1.4270.000101
ORF1ab/nsp13125T125TacCacT22B.1.4290.000047
ORF1ab/nsp13125T125TacCacT22B.1.4500.022727
ORF1ab/nsp13125T125TacCacT22B.1.5250.000226
ORF1ab/nsp13125T125IaCcaTc22B.1.617.20.000008
ORF1ab/nsp13125T125IaCcaTc22P.10.000032
ORF1ab/nsp13125T125TacCacT22P.20.000373
ORF1ab/nsp13125T125SAccTcc22P.30.00319
ORF1ab/nsp13125T125TacCacA11A0.000387
ORF1ab/nsp13125T125TacCacA11A.2.40.003367
ORF1ab/nsp13125T125TacCacT11A.2.5.10.004808
ORF1ab/nsp13125T125HACcCAc11All0
ORF1ab/nsp13125T125MaCCaTG11All0
ORF1ab/nsp13125T125CACCTGT11All0
ORF1ab/nsp13125T125VACcGTc11All0
ORF1ab/nsp13125T125AAccGcc11AY.1030.000006
ORF1ab/nsp13125T125IaCcaTc11AY.1090.00074
ORF1ab/nsp13125T125TacCacT11AY.1110.000183
ORF1ab/nsp13125T125TacCacT11AY.1160.000287
ORF1ab/nsp13125T125TacCacT11AY.1170.000085
ORF1ab/nsp13125T125AAccGcc11AY.1180.000063
ORF1ab/nsp13125T125TacCacT11AY.1190.000035
ORF1ab/nsp13125T125TacCacT11AY.1210.000135
ORF1ab/nsp13125T125IaCcaTc11AY.140.000088
ORF1ab/nsp13125T125TacCacT11AY.160.00038
ORF1ab/nsp13125T125TacCacA11AY.16.10.00047
ORF1ab/nsp13125T125delACC---11AY.240.000431
ORF1ab/nsp13125T125IaCcaTc11AY.250.000006
ORF1ab/nsp13125T125AAccGcc11AY.250.000006
ORF1ab/nsp13125T125TacCacT11AY.270.000065
ORF1ab/nsp13125T125IaCcaTc11AY.300.000396
ORF1ab/nsp13125T125NaCcaAc11AY.360.000148
ORF1ab/nsp13125T125AAccGcc11AY.390.000025
ORF1ab/nsp13125T125IaCcaTc11AY.39.10.00004
ORF1ab/nsp13125T125TacCacA11AY.39.1.10.000725
ORF1ab/nsp13125T125delACC---11AY.40.000002
ORF1ab/nsp13125T125delACC---11AY.430.000004
ORF1ab/nsp13125T125delACC---11AY.440.000006
ORF1ab/nsp13125T125IaCcaTc11AY.46.10.001027
ORF1ab/nsp13125T125AAccGcc11AY.50.000021
ORF1ab/nsp13125T125TacCacT11AY.550.000917
ORF1ab/nsp13125T125TacCacT11AY.620.000436
ORF1ab/nsp13125T125TacCacT11AY.670.000464
ORF1ab/nsp13125T125IaCcaTc11AY.750.000056
ORF1ab/nsp13125T125TacCacT11AY.750.000056
ORF1ab/nsp13125T125delACC---11AY.90.000068
ORF1ab/nsp13125T125NaCcaAc11AY.9.20.000037
ORF1ab/nsp13125T125TacCacT11AY.930.000273
ORF1ab/nsp13125T125TacCacA11B0.000128
ORF1ab/nsp13125T125PAccCcc11B.10.000009
ORF1ab/nsp13125T125NaCcaAc11B.10.000009
ORF1ab/nsp13125T125SAccTcc11B.10.000009
ORF1ab/nsp13125T125MaCCaTG11B.1.10.000018
ORF1ab/nsp13125T125IaCcaTc11B.1.1.100.001115
ORF1ab/nsp13125T125delACC---11B.1.1.1970.037037
ORF1ab/nsp13125T125IaCcaTc11B.1.1.2220.000204
ORF1ab/nsp13125T125NaCcaAc11B.1.1.2220.000204
ORF1ab/nsp13125T125delACC---11B.1.1.2310.003096
ORF1ab/nsp13125T125TacCacT11B.1.1.2630.001558
ORF1ab/nsp13125T125IaCcaTc11B.1.1.2690.001353
ORF1ab/nsp13125T125TacCacT11B.1.1.2840.000107
ORF1ab/nsp13125T125IaCcaTc11B.1.1.2980.000862
ORF1ab/nsp13125T125del1ACC-NN11B.1.1.3050.003861
ORF1ab/nsp13125T125delACC---11B.1.1.3050.003861
ORF1ab/nsp13125T125delACC---11B.1.1.3060.000438
ORF1ab/nsp13125T125delACC---11B.1.1.3180.000302
ORF1ab/nsp13125T125IaCcaTc11B.1.1.330.000421
ORF1ab/nsp13125T125TacCacT11B.1.1.330.000421
ORF1ab/nsp13125T125TacCacT11B.1.1.3480.000796
ORF1ab/nsp13125T125NaCcaAc11B.1.1.3720.000689
ORF1ab/nsp13125T125IaCcaTc11B.1.1.3720.000689
ORF1ab/nsp13125T125TacCacT11B.1.1.4870.005587
ORF1ab/nsp13125T125delACC---11B.1.1.510.001718
ORF1ab/nsp13125T125IaCcaTc11B.1.1.510.001718
ORF1ab/nsp13125T125delACC---11B.1.1.5190.00004
ORF1ab/nsp13125T125IaCcaTc11B.1.1.5190.00004
ORF1ab/nsp13125T125del1ACC-NN11B.1.1.70.000001
ORF1ab/nsp13125T125TacCacT11B.1.130.002375
ORF1ab/nsp13125T125AAccGcc11B.1.1390.000733
ORF1ab/nsp13125T125delACC---11B.1.1400.018868
ORF1ab/nsp13125T125TacCacT11B.1.1600.000031
ORF1ab/nsp13125T125SAccTcc11B.1.160.220.006757
ORF1ab/nsp13125T125delACC---11B.1.160.230.004831
ORF1ab/nsp13125T125VACcGTc11B.1.1770.000013
ORF1ab/nsp13125T125TacCacT11B.1.177.120.000152
ORF1ab/nsp13125T125delACC---11B.1.177.730.000566
ORF1ab/nsp13125T125delACC---11B.1.177.830.001481
ORF1ab/nsp13125T125delACC---11B.1.20.000009
ORF1ab/nsp13125T125IaCcaTc11B.1.2100.002132
ORF1ab/nsp13125T125delACC---11B.1.2420.018868
ORF1ab/nsp13125T125AAccGcc11B.1.2430.00007
ORF1ab/nsp13125T125TacCacT11B.1.258.140.00098
ORF1ab/nsp13125T125TacCacT11B.1.3110.000275
ORF1ab/nsp13125T125NaCcaAc11B.1.3510.00003
ORF1ab/nsp13125T125NaCcaAc11B.1.360.000146
ORF1ab/nsp13125T125delACC---11B.1.360.000146
ORF1ab/nsp13125T125NaCcaAc11B.1.36.70.004
ORF1ab/nsp13125T125AAccGcc11B.1.3750.00082
ORF1ab/nsp13125T125delACC---11B.1.416.10.001563
ORF1ab/nsp13125T125TacCacT11B.1.4390.005917
ORF1ab/nsp13125T125IaCcaTc11B.1.4410.009615
ORF1ab/nsp13125T125SAccTcc11B.1.4970.000315
ORF1ab/nsp13125T125NaCcaAc11B.1.5250.000113
ORF1ab/nsp13125T125NaCcaAc11B.1.5270.003704
ORF1ab/nsp13125T125TacCacT11B.1.5640.000426
ORF1ab/nsp13125T125IaCcaTc11B.1.5750.000303
ORF1ab/nsp13125T125TacCacT11B.1.5750.000303
ORF1ab/nsp13125T125del1aCca-c11B.1.5820.000491
ORF1ab/nsp13125T125TacCacT11B.1.5960.000087
ORF1ab/nsp13125T125delACC---11B.1.617.10.000129
ORF1ab/nsp13125T125PAccCcc11B.1.617.20.000004
ORF1ab/nsp13125T125CACCTGT11B.1.617.20.000004
ORF1ab/nsp13125T125TacCacT11B.1.6280.000352
ORF1ab/nsp13125T125TacCacT11B.1.6370.000073
ORF1ab/nsp13125T125TacCacT11B.60.00091
ORF1ab/nsp13125T125TacCacT11C.360.000911
ORF1ab/nsp13125T125TacCacA11D.20.000075
ORF1ab/nsp13125T125SaCcaGc11D.20.000075
ORF1ab/nsp13125T125HACcCAc11P.10.000016
ORF1ab/nsp13125T125AAccGcc11P.10.000016
ORF1ab/nsp13125T125TacCacT11P.1.140.000048
ORF1ab/nsp13125T125TacCacT11Q.30.000145
ORF1ab/nsp13125T125TacCacT11Q.80.000165