CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 124 & Codon = aaT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13124N124NN5448NsynaaCaaT16521652116606-16608

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13124N124NaaCaaT16521652All0.000316
ORF1ab/nsp13124N124NaaCaaT606606B.1.1.70.000543
ORF1ab/nsp13124N124NaaCaaT263263AY.9.20.00966
ORF1ab/nsp13124N124NaaCaaT250250AY.440.001522
ORF1ab/nsp13124N124NaaCaaT7676AY.290.001199
ORF1ab/nsp13124N124NaaCaaT5050B.1.617.20.000188
ORF1ab/nsp13124N124NaaCaaT4242AY.430.000186
ORF1ab/nsp13124N124NaaCaaT3939AY.40.000061
ORF1ab/nsp13124N124NaaCaaT3535C.370.004062
ORF1ab/nsp13124N124NaaCaaT1818AY.4.20.00039
ORF1ab/nsp13124N124NaaCaaT1717AY.90.001149
ORF1ab/nsp13124N124NaaCaaT1717B.1.617.10.002192
ORF1ab/nsp13124N124NaaCaaT1616B.1.3510.000476
ORF1ab/nsp13124N124NaaCaaT1414AY.1030.000087
ORF1ab/nsp13124N124NaaCaaT1414B.1.1770.000184
ORF1ab/nsp13124N124NaaCaaT1414B.1.6370.001023
ORF1ab/nsp13124N124NaaCaaT1313B.1.177.810.002461
ORF1ab/nsp13124N124NaaCaaT1111AY.30.000109
ORF1ab/nsp13124N124NaaCaaT88AY.980.000632
ORF1ab/nsp13124N124NaaCaaT77B.1.10.000127
ORF1ab/nsp13124N124NaaCaaT77B.1.466.20.002739
ORF1ab/nsp13124N124NaaCaaT66AY.250.000036
ORF1ab/nsp13124N124NaaCaaT55AY.1020.000133
ORF1ab/nsp13124N124NaaCaaT55AY.4.10.003687
ORF1ab/nsp13124N124NaaCaaT55AY.46.40.000823
ORF1ab/nsp13124N124NaaCaaT55B.10.000046
ORF1ab/nsp13124N124NaaCaaT55B.1.20.000044
ORF1ab/nsp13124N124NaaCaaT44AY.200.000155
ORF1ab/nsp13124N124NaaCaaT44AY.470.000124
ORF1ab/nsp13124N124NaaCaaT44AY.530.00115
ORF1ab/nsp13124N124NaaCaaT44AY.60.000165
ORF1ab/nsp13124N124NaaCaaT44AY.610.000419
ORF1ab/nsp13124N124NaaCaaT44B.1.1.5190.000159
ORF1ab/nsp13124N124NaaCaaT44B.1.4270.000202
ORF1ab/nsp13124N124NaaCaaT33AY.270.000194
ORF1ab/nsp13124N124NaaCaaT33AY.390.000074
ORF1ab/nsp13124N124NaaCaaT33AY.39.10.000119
ORF1ab/nsp13124N124NaaCaaT33B.1.1.1570.00274
ORF1ab/nsp13124N124NaaCaaT33B.1.5260.000071
ORF1ab/nsp13124N124NaaCaaT33P.10.000047
ORF1ab/nsp13124N124NaaCaaT22AY.230.000139
ORF1ab/nsp13124N124NaaCaaT22AY.720.002721
ORF1ab/nsp13124N124NaaCaaT22AY.740.000231
ORF1ab/nsp13124N124NaaCaaT22AY.75.10.000361
ORF1ab/nsp13124N124NaaCaaT22B.1.1.2220.000408
ORF1ab/nsp13124N124NaaCaaT22B.1.177.470.025974
ORF1ab/nsp13124N124NaaCaaT22B.1.2580.000133
ORF1ab/nsp13124N124NaaCaaT22B.1.3770.009132
ORF1ab/nsp13124N124NaaCaaT22B.1.3810.015625
ORF1ab/nsp13124N124NaaCaaT22B.400.000729
ORF1ab/nsp13124N124NaaCaaT22D.20.00015
ORF1ab/nsp13124N124NaaCaaT22P.1.140.000096
ORF1ab/nsp13124N124NaaCaaT11A.20.000662
ORF1ab/nsp13124N124NaaCaaT11A.2.40.003367
ORF1ab/nsp13124N124NaaCaaT11A.2.50.000499
ORF1ab/nsp13124N124NaaCaaT11AY.1010.00049
ORF1ab/nsp13124N124NaaCaaT11AY.110.001339
ORF1ab/nsp13124N124NaaCaaT11AY.1190.000035
ORF1ab/nsp13124N124NaaCaaT11AY.130.000161
ORF1ab/nsp13124N124NaaCaaT11AY.330.000067
ORF1ab/nsp13124N124NaaCaaT11AY.460.000104
ORF1ab/nsp13124N124NaaCaaT11AY.46.10.001027
ORF1ab/nsp13124N124NaaCaaT11AY.550.000917
ORF1ab/nsp13124N124NaaCaaT11AY.560.001605
ORF1ab/nsp13124N124NaaCaaT11AY.680.000274
ORF1ab/nsp13124N124NaaCaaT11AY.9.10.000084
ORF1ab/nsp13124N124NaaCaaT11AY.940.000443
ORF1ab/nsp13124N124NaaCaaT11B.1.1.280.000311
ORF1ab/nsp13124N124NaaCaaT11B.1.1.3510.002793
ORF1ab/nsp13124N124NaaCaaT11B.1.1600.000031
ORF1ab/nsp13124N124NaaCaaT11B.1.160.160.000929
ORF1ab/nsp13124N124NaaCaaT11B.1.177.120.000152
ORF1ab/nsp13124N124NaaCaaT11B.1.177.40.000211
ORF1ab/nsp13124N124NaaCaaT11B.1.2430.00007
ORF1ab/nsp13124N124NaaCaaT11B.1.258.160.001637
ORF1ab/nsp13124N124NaaCaaT11B.1.3110.000275
ORF1ab/nsp13124N124NaaCaaT11B.1.360.000146
ORF1ab/nsp13124N124NaaCaaT11B.1.438.10.000107
ORF1ab/nsp13124N124NaaCaaT11B.1.5610.000397
ORF1ab/nsp13124N124NaaCaaT11B.1.5900.004545
ORF1ab/nsp13124N124NaaCaaT11B.1.5950.000261
ORF1ab/nsp13124N124NaaCaaT11B.1.5960.000087
ORF1ab/nsp13124N124NaaCaaT11P.1.130.000898
ORF1ab/nsp13124N124NaaCaaT11P.20.000187
ORF1ab/nsp13124N124NaaCaaT11Q.40.000455
ORF1ab/nsp13124N124NaaCaaT11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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