CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 115

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13115T115IT5439InonsynaCaaTa13191319116579-16581
ORF1ab/nsp13115T115TT5439TsynacAacT2762020.73188416579-16581
ORF1ab/nsp13115T115TT5439TsynacAacG276690.2516579-16581
ORF1ab/nsp13115T115TT5439TsynacAacC27650.018115916579-16581
ORF1ab/nsp13115T115delT5439deldelACA---255255116579-16581
ORF1ab/nsp13115T115AT5439AnonsynAcaGca8181116579-16581
ORF1ab/nsp13115T115KT5439KnonsynaCaaAa6565116579-16581
ORF1ab/nsp13115T115ST5439SnonsynAcaTca15130.86666716579-16581
ORF1ab/nsp13115T115ST5439SnonsynaCAaGT1520.13333316579-16581
ORF1ab/nsp13115T115del1T5439del1delaCaa-a840.516579-16581
ORF1ab/nsp13115T115del1T5439del1delACA-NN830.37516579-16581
ORF1ab/nsp13115T115del1T5439del1delacAac-810.12516579-16581
ORF1ab/nsp13115T115RT5439RnonsynaCAaGG320.66666716579-16581
ORF1ab/nsp13115T115RT5439RnonsynaCaaGa310.33333316579-16581
ORF1ab/nsp13115T115del2T5439del2delACA--N11116579-16581
ORF1ab/nsp13115T115PT5439PnonsynAcaCca11116579-16581

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13115T115IaCaaTa13191319All0.000252
ORF1ab/nsp13115T115IaCaaTa687687B.1.1.70.000615
ORF1ab/nsp13115T115TacAacT202276All0.000039
ORF1ab/nsp13115T115TacAacG69276All0.000013
ORF1ab/nsp13115T115TacAacC5276All0.000001
ORF1ab/nsp13115T115delACA---255255All0.000049
ORF1ab/nsp13115T115IaCaaTa255255B.1.20.002245
ORF1ab/nsp13115T115delACA---157157B.1.1.70.000141
ORF1ab/nsp13115T115TacAacT8996B.1.1.70.00008
ORF1ab/nsp13115T115TacAacG796B.1.1.70.000006
ORF1ab/nsp13115T115AAcaGca8181All0.000015
ORF1ab/nsp13115T115TacAacT6878B.1.617.20.000256
ORF1ab/nsp13115T115TacAacG878B.1.617.20.00003
ORF1ab/nsp13115T115TacAacC278B.1.617.20.000008
ORF1ab/nsp13115T115KaCaaAa6565All0.000012
ORF1ab/nsp13115T115IaCaaTa3737B.10.000339
ORF1ab/nsp13115T115AAcaGca3636AY.40.000056
ORF1ab/nsp13115T115IaCaaTa2626P.10.00041
ORF1ab/nsp13115T115delACA---2525B.1.1770.000329
ORF1ab/nsp13115T115IaCaaTa2525B.1.4290.000588
ORF1ab/nsp13115T115IaCaaTa1919B.1.1770.00025
ORF1ab/nsp13115T115IaCaaTa1717B.1.10.000308
ORF1ab/nsp13115T115KaCaaAa1616R.10.00144
ORF1ab/nsp13115T115SAcaTca1315All0.000002
ORF1ab/nsp13115T115SaCAaGT215All0
ORF1ab/nsp13115T115KaCaaAa1414B.1.1.70.000013
ORF1ab/nsp13115T115delACA---1111B.1.10.0002
ORF1ab/nsp13115T115IaCaaTa1111B.1.1600.000343
ORF1ab/nsp13115T115IaCaaTa1111B.1.4260.0111
ORF1ab/nsp13115T115TacAacG810AY.40.000012
ORF1ab/nsp13115T115TacAacT210AY.40.000003
ORF1ab/nsp13115T115SAcaTca1010AY.420.000402
ORF1ab/nsp13115T115AAcaGca1010B.10.000092
ORF1ab/nsp13115T115IaCaaTa1010B.1.3510.000297
ORF1ab/nsp13115T115KaCaaAa99AY.250.000054
ORF1ab/nsp13115T115delACA---99AZ.20.007389
ORF1ab/nsp13115T115AAcaGca99B.1.1.70.000008
ORF1ab/nsp13115T115IaCaaTa99B.1.2430.000626
ORF1ab/nsp13115T115IaCaaTa99B.1.4861
ORF1ab/nsp13115T115IaCaaTa99B.1.4970.002833
ORF1ab/nsp13115T115TacAacT79P.10.00011
ORF1ab/nsp13115T115TacAacG29P.10.000032
ORF1ab/nsp13115T115IaCaaTa99P.1.100.002425
ORF1ab/nsp13115T115del1aCaa-a48All0.000001
ORF1ab/nsp13115T115del1ACA-NN38All0.000001
ORF1ab/nsp13115T115del1acAac-18All0
ORF1ab/nsp13115T115TacAacG47AY.390.000099
ORF1ab/nsp13115T115TacAacT37AY.390.000074
ORF1ab/nsp13115T115TacAacG67B.1.20.000053
ORF1ab/nsp13115T115TacAacT17B.1.20.000009
ORF1ab/nsp13115T115IaCaaTa77B.1.5260.000165
ORF1ab/nsp13115T115delACA---66AD.20.001314
ORF1ab/nsp13115T115TacAacG66AY.430.000027
ORF1ab/nsp13115T115TacAacT56AY.440.00003
ORF1ab/nsp13115T115TacAacG16AY.440.000006
ORF1ab/nsp13115T115IaCaaTa66B.1.1.470.032086
ORF1ab/nsp13115T115IaCaaTa66B.1.2210.000426
ORF1ab/nsp13115T115IaCaaTa55AY.1030.000031
ORF1ab/nsp13115T115AAcaGca55AY.440.00003
ORF1ab/nsp13115T115TacAacT35B.10.000027
ORF1ab/nsp13115T115TacAacG25B.10.000018
ORF1ab/nsp13115T115TacAacT55B.1.1.3580.172414
ORF1ab/nsp13115T115IaCaaTa55B.1.177.320.006748
ORF1ab/nsp13115T115IaCaaTa55B.1.3110.001373
ORF1ab/nsp13115T115TacAacG55B.1.36.290.002587
ORF1ab/nsp13115T115KaCaaAa55B.1.4290.000118
ORF1ab/nsp13115T115IaCaaTa55B.1.5680.005556
ORF1ab/nsp13115T115IaCaaTa55B.1.5960.000436
ORF1ab/nsp13115T115IaCaaTa55P.1.140.000239
ORF1ab/nsp13115T115IaCaaTa55P.20.000933
ORF1ab/nsp13115T115delACA---440.222222
ORF1ab/nsp13115T115IaCaaTa44B.1.1.100.004459
ORF1ab/nsp13115T115IaCaaTa44B.1.1.280.001245
ORF1ab/nsp13115T115IaCaaTa44B.1.1.4320.005063
ORF1ab/nsp13115T115IaCaaTa44B.1.5250.000453
ORF1ab/nsp13115T115IaCaaTa44P.1.160.001496
ORF1ab/nsp13115T115IaCaaTa33A.180.15
ORF1ab/nsp13115T115RaCAaGG23All0
ORF1ab/nsp13115T115RaCaaGa13All0
ORF1ab/nsp13115T115TacAacT23AY.1170.000169
ORF1ab/nsp13115T115TacAacG13AY.1170.000085
ORF1ab/nsp13115T115TacAacT23AY.250.000012
ORF1ab/nsp13115T115TacAacG13AY.250.000006
ORF1ab/nsp13115T115KaCaaAa33AY.40.000005
ORF1ab/nsp13115T115IaCaaTa33AY.40.000005
ORF1ab/nsp13115T115KaCaaAa33AY.4.10.002212
ORF1ab/nsp13115T115delACA---33AY.430.000013
ORF1ab/nsp13115T115delACA---33B.10.000027
ORF1ab/nsp13115T115AAcaGca33B.1.1.1640.015464
ORF1ab/nsp13115T115delACA---33B.1.1.3050.011583
ORF1ab/nsp13115T115TacAacT33B.1.1490.010274
ORF1ab/nsp13115T115IaCaaTa33B.1.2580.0002
ORF1ab/nsp13115T115IaCaaTa33B.1.4000.001287
ORF1ab/nsp13115T115IaCaaTa33B.1.466.20.001174
ORF1ab/nsp13115T115IaCaaTa33B.1.617.20.000011
ORF1ab/nsp13115T115IaCaaTa33D.20.000225
ORF1ab/nsp13115T115delACA---33Q.10.000379
ORF1ab/nsp13115T115RaCAaGG220.111111
ORF1ab/nsp13115T115SaCAaGT220.111111
ORF1ab/nsp13115T115TacAacG220.111111
ORF1ab/nsp13115T115AAcaGca22AY.1140.000462
ORF1ab/nsp13115T115TacAacT12AY.470.000031
ORF1ab/nsp13115T115TacAacG12AY.470.000031
ORF1ab/nsp13115T115KaCaaAa22AY.690.000373
ORF1ab/nsp13115T115TacAacG22AY.9.20.000073
ORF1ab/nsp13115T115KaCaaAa22B.10.000018
ORF1ab/nsp13115T115TacAacT12B.1.10.000018
ORF1ab/nsp13115T115TacAacG12B.1.10.000018
ORF1ab/nsp13115T115IaCaaTa22B.1.1.1210.004854
ORF1ab/nsp13115T115IaCaaTa22B.1.1.1710.007353
ORF1ab/nsp13115T115delACA---22B.1.1.3150.016949
ORF1ab/nsp13115T115delACA---22B.1.1.440.004819
ORF1ab/nsp13115T115del1ACA-NN12B.1.1.70.000001
ORF1ab/nsp13115T115del1acAac-12B.1.1.70.000001
ORF1ab/nsp13115T115TacAacG22B.1.1770.000026
ORF1ab/nsp13115T115delACA---22B.1.20.000018
ORF1ab/nsp13115T115IaCaaTa22B.1.214.20.001199
ORF1ab/nsp13115T115IaCaaTa22B.1.36.310.003503
ORF1ab/nsp13115T115IaCaaTa22B.1.3690.00057
ORF1ab/nsp13115T115IaCaaTa22B.1.4360.002058
ORF1ab/nsp13115T115IaCaaTa22B.1.595.10.011696
ORF1ab/nsp13115T115IaCaaTa22B.1.5970.009259
ORF1ab/nsp13115T115IaCaaTa22B.1.617.10.000258
ORF1ab/nsp13115T115AAcaGca22B.1.617.20.000008
ORF1ab/nsp13115T115KaCaaAa22B.1.617.20.000008
ORF1ab/nsp13115T115IaCaaTa22B.1.6370.000146
ORF1ab/nsp13115T115IaCaaTa22P.1.150.000465
ORF1ab/nsp13115T115IaCaaTa22Q.30.00029
ORF1ab/nsp13115T115PAcaCca11A.20.000662
ORF1ab/nsp13115T115AAcaGca11A.2.40.003367
ORF1ab/nsp13115T115TacAacG11A.2.40.003367
ORF1ab/nsp13115T115PAcaCca11All0
ORF1ab/nsp13115T115del2ACA--N11All0
ORF1ab/nsp13115T115del1aCaa-a11AU.10.001266
ORF1ab/nsp13115T115AAcaGca11AY.1030.000006
ORF1ab/nsp13115T115AAcaGca11AY.1100.000113
ORF1ab/nsp13115T115IaCaaTa11AY.1180.000063
ORF1ab/nsp13115T115AAcaGca11AY.1190.000035
ORF1ab/nsp13115T115delACA---11AY.120.10.000321
ORF1ab/nsp13115T115IaCaaTa11AY.120.10.000321
ORF1ab/nsp13115T115delACA---11AY.240.000431
ORF1ab/nsp13115T115delACA---11AY.250.000006
ORF1ab/nsp13115T115del1aCaa-a11AY.250.000006
ORF1ab/nsp13115T115KaCaaAa11AY.260.000028
ORF1ab/nsp13115T115IaCaaTa11AY.270.000065
ORF1ab/nsp13115T115TacAacC11AY.290.000016
ORF1ab/nsp13115T115TacAacG11AY.330.000067
ORF1ab/nsp13115T115TacAacT11AY.39.10.00004
ORF1ab/nsp13115T115delACA---11AY.40.000002
ORF1ab/nsp13115T115SAcaTca11AY.40.000002
ORF1ab/nsp13115T115IaCaaTa11AY.4.20.000022
ORF1ab/nsp13115T115TacAacG11AY.4.2.10.000149
ORF1ab/nsp13115T115delACA---11AY.4.50.000107
ORF1ab/nsp13115T115IaCaaTa11AY.4.50.000107
ORF1ab/nsp13115T115IaCaaTa11AY.430.000004
ORF1ab/nsp13115T115IaCaaTa11AY.440.000006
ORF1ab/nsp13115T115delACA---11AY.440.000006
ORF1ab/nsp13115T115TacAacT11AY.450.000122
ORF1ab/nsp13115T115TacAacT11AY.46.10.001027
ORF1ab/nsp13115T115TacAacT11AY.5.40.000277
ORF1ab/nsp13115T115AAcaGca11AY.620.000436
ORF1ab/nsp13115T115IaCaaTa11AY.750.000056
ORF1ab/nsp13115T115KaCaaAa11AY.75.10.00018
ORF1ab/nsp13115T115delACA---11AY.90.000068
ORF1ab/nsp13115T115TacAacT11AY.9.10.000084
ORF1ab/nsp13115T115TacAacT11AY.980.000079
ORF1ab/nsp13115T115IaCaaTa11AY.99.20.000092
ORF1ab/nsp13115T115del1ACA-NN11AZ.20.000821
ORF1ab/nsp13115T115del1aCaa-a11B0.000128
ORF1ab/nsp13115T115RaCaaGa11B.10.000009
ORF1ab/nsp13115T115KaCaaAa11B.1.10.000018
ORF1ab/nsp13115T115IaCaaTa11B.1.1.1480.008772
ORF1ab/nsp13115T115IaCaaTa11B.1.1.1700.001247
ORF1ab/nsp13115T115IaCaaTa11B.1.1.1760.000439
ORF1ab/nsp13115T115delACA---11B.1.1.1970.037037
ORF1ab/nsp13115T115IaCaaTa11B.1.1.2140.000055
ORF1ab/nsp13115T115delACA---11B.1.1.2310.003096
ORF1ab/nsp13115T115IaCaaTa11B.1.1.2410.00207
ORF1ab/nsp13115T115IaCaaTa11B.1.1.2430.004082
ORF1ab/nsp13115T115KaCaaAa11B.1.1.2770.000759
ORF1ab/nsp13115T115TacAacG11B.1.1.2800.003086
ORF1ab/nsp13115T115delACA---11B.1.1.3060.000438
ORF1ab/nsp13115T115IaCaaTa11B.1.1.3110.000358
ORF1ab/nsp13115T115AAcaGca11B.1.1.3170.000412
ORF1ab/nsp13115T115IaCaaTa11B.1.1.3170.000412
ORF1ab/nsp13115T115delACA---11B.1.1.3180.000302
ORF1ab/nsp13115T115IaCaaTa11B.1.1.3260.001761
ORF1ab/nsp13115T115TacAacC11B.1.1.330.000421
ORF1ab/nsp13115T115IaCaaTa11B.1.1.3680.003086
ORF1ab/nsp13115T115IaCaaTa11B.1.1.3720.000689
ORF1ab/nsp13115T115IaCaaTa11B.1.1.390.00051
ORF1ab/nsp13115T115IaCaaTa11B.1.1.440.00241
ORF1ab/nsp13115T115IaCaaTa11B.1.1.480.002874
ORF1ab/nsp13115T115IaCaaTa11B.1.1.500.000679
ORF1ab/nsp13115T115delACA---11B.1.1.510.001718
ORF1ab/nsp13115T115delACA---11B.1.1.5190.00004
ORF1ab/nsp13115T115delACA---11B.1.1.5210.005348
ORF1ab/nsp13115T115IaCaaTa11B.1.1.5250.005464
ORF1ab/nsp13115T115del2ACA--N11B.1.1.70.000001
ORF1ab/nsp13115T115SAcaTca11B.1.1.70.000001
ORF1ab/nsp13115T115delACA---11B.1.1.700.000341
ORF1ab/nsp13115T115IaCaaTa11B.1.1.700.000341
ORF1ab/nsp13115T115IaCaaTa11B.1.1390.000733
ORF1ab/nsp13115T115delACA---11B.1.1400.018868
ORF1ab/nsp13115T115IaCaaTa11B.1.1460.004237
ORF1ab/nsp13115T115IaCaaTa11B.1.160.150.00495
ORF1ab/nsp13115T115delACA---11B.1.160.230.004831
ORF1ab/nsp13115T115KaCaaAa11B.1.1770.000013
ORF1ab/nsp13115T115IaCaaTa11B.1.177.460.000918
ORF1ab/nsp13115T115IaCaaTa11B.1.177.510.004566
ORF1ab/nsp13115T115delACA---11B.1.177.730.000566
ORF1ab/nsp13115T115IaCaaTa11B.1.177.810.000189
ORF1ab/nsp13115T115delACA---11B.1.177.830.001481
ORF1ab/nsp13115T115IaCaaTa11B.1.177.830.001481
ORF1ab/nsp13115T115AAcaGca11B.1.20.000009
ORF1ab/nsp13115T115TacAacG11B.1.2320.000537
ORF1ab/nsp13115T115TacAacG11B.1.2390.001221
ORF1ab/nsp13115T115IaCaaTa11B.1.2390.001221
ORF1ab/nsp13115T115delACA---11B.1.2420.018868
ORF1ab/nsp13115T115TacAacG11B.1.2430.00007
ORF1ab/nsp13115T115IaCaaTa11B.1.258.170.000104
ORF1ab/nsp13115T115IaCaaTa11B.1.258.190.007092
ORF1ab/nsp13115T115IaCaaTa11B.1.258.30.001675
ORF1ab/nsp13115T115IaCaaTa11B.1.30.002618
ORF1ab/nsp13115T115KaCaaAa11B.1.30.002618
ORF1ab/nsp13115T115AAcaGca11B.1.3460.001311
ORF1ab/nsp13115T115TacAacG11B.1.3510.00003
ORF1ab/nsp13115T115delACA---11B.1.360.000146
ORF1ab/nsp13115T115AAcaGca11B.1.360.000146
ORF1ab/nsp13115T115IaCaaTa11B.1.36.10.00114
ORF1ab/nsp13115T115IaCaaTa11B.1.36.100.004785
ORF1ab/nsp13115T115IaCaaTa11B.1.36.160.001425
ORF1ab/nsp13115T115IaCaaTa11B.1.36.290.000517
ORF1ab/nsp13115T115IaCaaTa11B.1.36.80.001
ORF1ab/nsp13115T115IaCaaTa11B.1.362.20.004717
ORF1ab/nsp13115T115SAcaTca11B.1.3960.000706
ORF1ab/nsp13115T115IaCaaTa11B.1.3980.002976
ORF1ab/nsp13115T115TacAacC11B.1.4160.001269
ORF1ab/nsp13115T115delACA---11B.1.416.10.001563
ORF1ab/nsp13115T115IaCaaTa11B.1.4270.00005
ORF1ab/nsp13115T115TacAacG11B.1.4290.000024
ORF1ab/nsp13115T115TacAacT11B.1.438.10.000107
ORF1ab/nsp13115T115delACA---11B.1.438.10.000107
ORF1ab/nsp13115T115IaCaaTa11B.1.4530.003236
ORF1ab/nsp13115T115IaCaaTa11B.1.4620.007246
ORF1ab/nsp13115T115AAcaGca11B.1.4970.000315
ORF1ab/nsp13115T115TacAacT11B.1.5240.001406
ORF1ab/nsp13115T115IaCaaTa11B.1.5640.000426
ORF1ab/nsp13115T115IaCaaTa11B.1.564.10.001577
ORF1ab/nsp13115T115IaCaaTa11B.1.5750.000303
ORF1ab/nsp13115T115IaCaaTa11B.1.5760.000907
ORF1ab/nsp13115T115IaCaaTa11B.1.5770.000687
ORF1ab/nsp13115T115IaCaaTa11B.1.5870.001898
ORF1ab/nsp13115T115IaCaaTa11B.1.5900.004545
ORF1ab/nsp13115T115AAcaGca11B.1.5950.000261
ORF1ab/nsp13115T115IaCaaTa11B.1.5950.000261
ORF1ab/nsp13115T115AAcaGca11B.1.5960.000087
ORF1ab/nsp13115T115TacAacT11B.1.5960.000087
ORF1ab/nsp13115T115IaCaaTa11B.1.60.017241
ORF1ab/nsp13115T115del1aCaa-a11B.1.617.10.000129
ORF1ab/nsp13115T115delACA---11B.1.617.10.000129
ORF1ab/nsp13115T115delACA---11B.1.617.20.000004
ORF1ab/nsp13115T115IaCaaTa11B.1.6210.000089
ORF1ab/nsp13115T115IaCaaTa11B.1.6270.00202
ORF1ab/nsp13115T115IaCaaTa11B.1.6310.003367
ORF1ab/nsp13115T115TacAacT11B.1.6370.000073
ORF1ab/nsp13115T115KaCaaAa11B.1.6370.000073
ORF1ab/nsp13115T115AAcaGca11B.400.000364
ORF1ab/nsp13115T115IaCaaTa11B.560.028571
ORF1ab/nsp13115T115KaCaaAa11B.60.00091
ORF1ab/nsp13115T115del1ACA-NN11P.1.10.000318
ORF1ab/nsp13115T115KaCaaAa11P.1.120.000484
ORF1ab/nsp13115T115IaCaaTa11P.1.120.000484
ORF1ab/nsp13115T115IaCaaTa11P.1.130.000898
ORF1ab/nsp13115T115IaCaaTa11P.1.70.000319
ORF1ab/nsp13115T115IaCaaTa11P.70.004367
ORF1ab/nsp13115T115IaCaaTa11Q.80.000165
ORF1ab/nsp13115T115AAcaGca11Q.80.000165
ORF1ab/nsp13115T115TacAacG11Q.80.000165