CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 115 | T115I | T5439I | nonsyn | aCa | aTa | 1319 | 1319 | 1 | 16579-16581 |
ORF1ab/nsp13 | 115 | T115T | T5439T | syn | acA | acT | 276 | 202 | 0.731884 | 16579-16581 |
ORF1ab/nsp13 | 115 | T115T | T5439T | syn | acA | acG | 276 | 69 | 0.25 | 16579-16581 |
ORF1ab/nsp13 | 115 | T115T | T5439T | syn | acA | acC | 276 | 5 | 0.0181159 | 16579-16581 |
ORF1ab/nsp13 | 115 | T115del | T5439del | del | ACA | --- | 255 | 255 | 1 | 16579-16581 |
ORF1ab/nsp13 | 115 | T115A | T5439A | nonsyn | Aca | Gca | 81 | 81 | 1 | 16579-16581 |
ORF1ab/nsp13 | 115 | T115K | T5439K | nonsyn | aCa | aAa | 65 | 65 | 1 | 16579-16581 |
ORF1ab/nsp13 | 115 | T115S | T5439S | nonsyn | Aca | Tca | 15 | 13 | 0.866667 | 16579-16581 |
ORF1ab/nsp13 | 115 | T115S | T5439S | nonsyn | aCA | aGT | 15 | 2 | 0.133333 | 16579-16581 |
ORF1ab/nsp13 | 115 | T115del1 | T5439del1 | del | aCa | a-a | 8 | 4 | 0.5 | 16579-16581 |
ORF1ab/nsp13 | 115 | T115del1 | T5439del1 | del | ACA | -NN | 8 | 3 | 0.375 | 16579-16581 |
ORF1ab/nsp13 | 115 | T115del1 | T5439del1 | del | acA | ac- | 8 | 1 | 0.125 | 16579-16581 |
ORF1ab/nsp13 | 115 | T115R | T5439R | nonsyn | aCA | aGG | 3 | 2 | 0.666667 | 16579-16581 |
ORF1ab/nsp13 | 115 | T115R | T5439R | nonsyn | aCa | aGa | 3 | 1 | 0.333333 | 16579-16581 |
ORF1ab/nsp13 | 115 | T115del2 | T5439del2 | del | ACA | --N | 1 | 1 | 1 | 16579-16581 |
ORF1ab/nsp13 | 115 | T115P | T5439P | nonsyn | Aca | Cca | 1 | 1 | 1 | 16579-16581 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1319 | 1319 | All | 0.000252 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 687 | 687 | B.1.1.7 | 0.000615 |
ORF1ab/nsp13 | 115 | T115T | acA | acT | 202 | 276 | All | 0.000039 |
ORF1ab/nsp13 | 115 | T115T | acA | acG | 69 | 276 | All | 0.000013 |
ORF1ab/nsp13 | 115 | T115T | acA | acC | 5 | 276 | All | 0.000001 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 255 | 255 | All | 0.000049 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 255 | 255 | B.1.2 | 0.002245 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 157 | 157 | B.1.1.7 | 0.000141 |
ORF1ab/nsp13 | 115 | T115T | acA | acT | 89 | 96 | B.1.1.7 | 0.00008 |
ORF1ab/nsp13 | 115 | T115T | acA | acG | 7 | 96 | B.1.1.7 | 0.000006 |
ORF1ab/nsp13 | 115 | T115A | Aca | Gca | 81 | 81 | All | 0.000015 |
ORF1ab/nsp13 | 115 | T115T | acA | acT | 68 | 78 | B.1.617.2 | 0.000256 |
ORF1ab/nsp13 | 115 | T115T | acA | acG | 8 | 78 | B.1.617.2 | 0.00003 |
ORF1ab/nsp13 | 115 | T115T | acA | acC | 2 | 78 | B.1.617.2 | 0.000008 |
ORF1ab/nsp13 | 115 | T115K | aCa | aAa | 65 | 65 | All | 0.000012 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 37 | 37 | B.1 | 0.000339 |
ORF1ab/nsp13 | 115 | T115A | Aca | Gca | 36 | 36 | AY.4 | 0.000056 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 26 | 26 | P.1 | 0.00041 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 25 | 25 | B.1.177 | 0.000329 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 25 | 25 | B.1.429 | 0.000588 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 19 | 19 | B.1.177 | 0.00025 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 17 | 17 | B.1.1 | 0.000308 |
ORF1ab/nsp13 | 115 | T115K | aCa | aAa | 16 | 16 | R.1 | 0.00144 |
ORF1ab/nsp13 | 115 | T115S | Aca | Tca | 13 | 15 | All | 0.000002 |
ORF1ab/nsp13 | 115 | T115S | aCA | aGT | 2 | 15 | All | 0 |
ORF1ab/nsp13 | 115 | T115K | aCa | aAa | 14 | 14 | B.1.1.7 | 0.000013 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 11 | 11 | B.1.1 | 0.0002 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 11 | 11 | B.1.160 | 0.000343 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 11 | 11 | B.1.426 | 0.0111 |
ORF1ab/nsp13 | 115 | T115T | acA | acG | 8 | 10 | AY.4 | 0.000012 |
ORF1ab/nsp13 | 115 | T115T | acA | acT | 2 | 10 | AY.4 | 0.000003 |
ORF1ab/nsp13 | 115 | T115S | Aca | Tca | 10 | 10 | AY.42 | 0.000402 |
ORF1ab/nsp13 | 115 | T115A | Aca | Gca | 10 | 10 | B.1 | 0.000092 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 10 | 10 | B.1.351 | 0.000297 |
ORF1ab/nsp13 | 115 | T115K | aCa | aAa | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 9 | 9 | AZ.2 | 0.007389 |
ORF1ab/nsp13 | 115 | T115A | Aca | Gca | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 9 | 9 | B.1.243 | 0.000626 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 9 | 9 | B.1.486 | 1 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 9 | 9 | B.1.497 | 0.002833 |
ORF1ab/nsp13 | 115 | T115T | acA | acT | 7 | 9 | P.1 | 0.00011 |
ORF1ab/nsp13 | 115 | T115T | acA | acG | 2 | 9 | P.1 | 0.000032 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 9 | 9 | P.1.10 | 0.002425 |
ORF1ab/nsp13 | 115 | T115del1 | aCa | a-a | 4 | 8 | All | 0.000001 |
ORF1ab/nsp13 | 115 | T115del1 | ACA | -NN | 3 | 8 | All | 0.000001 |
ORF1ab/nsp13 | 115 | T115del1 | acA | ac- | 1 | 8 | All | 0 |
ORF1ab/nsp13 | 115 | T115T | acA | acG | 4 | 7 | AY.39 | 0.000099 |
ORF1ab/nsp13 | 115 | T115T | acA | acT | 3 | 7 | AY.39 | 0.000074 |
ORF1ab/nsp13 | 115 | T115T | acA | acG | 6 | 7 | B.1.2 | 0.000053 |
ORF1ab/nsp13 | 115 | T115T | acA | acT | 1 | 7 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 7 | 7 | B.1.526 | 0.000165 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 6 | 6 | AD.2 | 0.001314 |
ORF1ab/nsp13 | 115 | T115T | acA | acG | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp13 | 115 | T115T | acA | acT | 5 | 6 | AY.44 | 0.00003 |
ORF1ab/nsp13 | 115 | T115T | acA | acG | 1 | 6 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 6 | 6 | B.1.1.47 | 0.032086 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 6 | 6 | B.1.221 | 0.000426 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp13 | 115 | T115A | Aca | Gca | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp13 | 115 | T115T | acA | acT | 3 | 5 | B.1 | 0.000027 |
ORF1ab/nsp13 | 115 | T115T | acA | acG | 2 | 5 | B.1 | 0.000018 |
ORF1ab/nsp13 | 115 | T115T | acA | acT | 5 | 5 | B.1.1.358 | 0.172414 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 5 | 5 | B.1.177.32 | 0.006748 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 5 | 5 | B.1.311 | 0.001373 |
ORF1ab/nsp13 | 115 | T115T | acA | acG | 5 | 5 | B.1.36.29 | 0.002587 |
ORF1ab/nsp13 | 115 | T115K | aCa | aAa | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 5 | 5 | B.1.568 | 0.005556 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 5 | 5 | P.2 | 0.000933 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 4 | 4 | B.1.1.10 | 0.004459 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 4 | 4 | B.1.1.432 | 0.005063 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 4 | 4 | B.1.525 | 0.000453 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 4 | 4 | P.1.16 | 0.001496 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 3 | 3 | A.18 | 0.15 |
ORF1ab/nsp13 | 115 | T115R | aCA | aGG | 2 | 3 | All | 0 |
ORF1ab/nsp13 | 115 | T115R | aCa | aGa | 1 | 3 | All | 0 |
ORF1ab/nsp13 | 115 | T115T | acA | acT | 2 | 3 | AY.117 | 0.000169 |
ORF1ab/nsp13 | 115 | T115T | acA | acG | 1 | 3 | AY.117 | 0.000085 |
ORF1ab/nsp13 | 115 | T115T | acA | acT | 2 | 3 | AY.25 | 0.000012 |
ORF1ab/nsp13 | 115 | T115T | acA | acG | 1 | 3 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 115 | T115K | aCa | aAa | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp13 | 115 | T115K | aCa | aAa | 3 | 3 | AY.4.1 | 0.002212 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp13 | 115 | T115A | Aca | Gca | 3 | 3 | B.1.1.164 | 0.015464 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 3 | 3 | B.1.1.305 | 0.011583 |
ORF1ab/nsp13 | 115 | T115T | acA | acT | 3 | 3 | B.1.149 | 0.010274 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 3 | 3 | B.1.400 | 0.001287 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp13 | 115 | T115R | aCA | aGG | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 115 | T115S | aCA | aGT | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 115 | T115T | acA | acG | 2 | 2 | 0.111111 | |
ORF1ab/nsp13 | 115 | T115A | Aca | Gca | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp13 | 115 | T115T | acA | acT | 1 | 2 | AY.47 | 0.000031 |
ORF1ab/nsp13 | 115 | T115T | acA | acG | 1 | 2 | AY.47 | 0.000031 |
ORF1ab/nsp13 | 115 | T115K | aCa | aAa | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp13 | 115 | T115T | acA | acG | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp13 | 115 | T115K | aCa | aAa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp13 | 115 | T115T | acA | acT | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 115 | T115T | acA | acG | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 2 | 2 | B.1.1.121 | 0.004854 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 2 | 2 | B.1.1.171 | 0.007353 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 2 | 2 | B.1.1.315 | 0.016949 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 2 | 2 | B.1.1.44 | 0.004819 |
ORF1ab/nsp13 | 115 | T115del1 | ACA | -NN | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 115 | T115del1 | acA | ac- | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 115 | T115T | acA | acG | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 2 | 2 | B.1.36.31 | 0.003503 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 2 | 2 | B.1.436 | 0.002058 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 2 | 2 | B.1.595.1 | 0.011696 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 2 | 2 | B.1.597 | 0.009259 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp13 | 115 | T115A | Aca | Gca | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp13 | 115 | T115K | aCa | aAa | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp13 | 115 | T115P | Aca | Cca | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp13 | 115 | T115A | Aca | Gca | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp13 | 115 | T115T | acA | acG | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp13 | 115 | T115P | Aca | Cca | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 115 | T115del2 | ACA | --N | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 115 | T115del1 | aCa | a-a | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp13 | 115 | T115A | Aca | Gca | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 115 | T115A | Aca | Gca | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp13 | 115 | T115A | Aca | Gca | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 115 | T115del1 | aCa | a-a | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 115 | T115K | aCa | aAa | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp13 | 115 | T115T | acA | acC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp13 | 115 | T115T | acA | acG | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp13 | 115 | T115T | acA | acT | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 115 | T115S | Aca | Tca | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp13 | 115 | T115T | acA | acG | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 115 | T115T | acA | acT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp13 | 115 | T115T | acA | acT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp13 | 115 | T115T | acA | acT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp13 | 115 | T115A | Aca | Gca | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp13 | 115 | T115K | aCa | aAa | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp13 | 115 | T115T | acA | acT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp13 | 115 | T115T | acA | acT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp13 | 115 | T115del1 | ACA | -NN | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp13 | 115 | T115del1 | aCa | a-a | 1 | 1 | B | 0.000128 |
ORF1ab/nsp13 | 115 | T115R | aCa | aGa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp13 | 115 | T115K | aCa | aAa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 1 | 1 | B.1.1.197 | 0.037037 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp13 | 115 | T115K | aCa | aAa | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp13 | 115 | T115T | acA | acG | 1 | 1 | B.1.1.280 | 0.003086 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp13 | 115 | T115A | Aca | Gca | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp13 | 115 | T115T | acA | acC | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.1.48 | 0.002874 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp13 | 115 | T115del2 | ACA | --N | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 115 | T115S | Aca | Tca | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.160.15 | 0.00495 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp13 | 115 | T115K | aCa | aAa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp13 | 115 | T115A | Aca | Gca | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 115 | T115T | acA | acG | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp13 | 115 | T115T | acA | acG | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 1 | 1 | B.1.242 | 0.018868 |
ORF1ab/nsp13 | 115 | T115T | acA | acG | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.258.19 | 0.007092 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp13 | 115 | T115K | aCa | aAa | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp13 | 115 | T115A | Aca | Gca | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp13 | 115 | T115T | acA | acG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp13 | 115 | T115A | Aca | Gca | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.362.2 | 0.004717 |
ORF1ab/nsp13 | 115 | T115S | Aca | Tca | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp13 | 115 | T115T | acA | acC | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp13 | 115 | T115T | acA | acG | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp13 | 115 | T115T | acA | acT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp13 | 115 | T115A | Aca | Gca | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp13 | 115 | T115T | acA | acT | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp13 | 115 | T115A | Aca | Gca | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp13 | 115 | T115A | Aca | Gca | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 115 | T115T | acA | acT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.6 | 0.017241 |
ORF1ab/nsp13 | 115 | T115del1 | aCa | a-a | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp13 | 115 | T115del | ACA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp13 | 115 | T115T | acA | acT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp13 | 115 | T115K | aCa | aAa | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp13 | 115 | T115A | Aca | Gca | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | B.56 | 0.028571 |
ORF1ab/nsp13 | 115 | T115K | aCa | aAa | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp13 | 115 | T115del1 | ACA | -NN | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp13 | 115 | T115K | aCa | aAa | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp13 | 115 | T115I | aCa | aTa | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp13 | 115 | T115A | Aca | Gca | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp13 | 115 | T115T | acA | acG | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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