CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 105

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp13	105	D105Y	D5429Y	nonsyn	Gac	Tac	2193	2193	1	16549-16551
ORF1ab/nsp13	105	D105D	D5429D	syn	gaC	gaT	704	704	1	16549-16551
ORF1ab/nsp13	105	D105del	D5429del	del	GAC	---	301	301	1	16549-16551
ORF1ab/nsp13	105	D105G	D5429G	nonsyn	gAc	gGc	191	190	0.994764	16549-16551
ORF1ab/nsp13	105	D105G	D5429G	nonsyn	gAC	gGG	191	1	0.0052356	16549-16551
ORF1ab/nsp13	105	D105A	D5429A	nonsyn	gAc	gCc	164	161	0.981707	16549-16551
ORF1ab/nsp13	105	D105A	D5429A	nonsyn	gAC	gCT	164	2	0.0121951	16549-16551
ORF1ab/nsp13	105	D105A	D5429A	nonsyn	gAC	gCA	164	1	0.00609756	16549-16551
ORF1ab/nsp13	105	D105N	D5429N	nonsyn	Gac	Aac	152	152	1	16549-16551
ORF1ab/nsp13	105	D105E	D5429E	nonsyn	gaC	gaA	29	28	0.965517	16549-16551
ORF1ab/nsp13	105	D105E	D5429E	nonsyn	gaC	gaG	29	1	0.0344828	16549-16551
ORF1ab/nsp13	105	D105V	D5429V	nonsyn	gAc	gTc	10	10	1	16549-16551
ORF1ab/nsp13	105	D105H	D5429H	nonsyn	Gac	Cac	2	2	1	16549-16551
ORF1ab/nsp13	105	D105S	D5429S	nonsyn	GAc	AGc	1	1	1	16549-16551
ORF1ab/nsp13	105	D105W	D5429W	nonsyn	GAC	TGG	1	1	1	16549-16551
ORF1ab/nsp13	105	D105C	D5429C	nonsyn	GAc	TGc	1	1	1	16549-16551
ORF1ab/nsp13	105	D105X	D5429X	nonsyn	GaC	TaG	1	1	1	16549-16551
ORF1ab/nsp13	105	D105del1	D5429del1	del	gaC	ga-	1	1	1	16549-16551
ORF1ab/nsp13	105	D105del2	D5429del2	del	GAC	--N	1	1	1	16549-16551

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp13	105	D105Y	Gac	Tac	2193	2193	All	0.000419
ORF1ab/nsp13	105	D105Y	Gac	Tac	1737	1737	C.36.3	0.985252
ORF1ab/nsp13	105	D105D	gaC	gaT	704	704	All	0.000135
ORF1ab/nsp13	105	D105D	gaC	gaT	380	380	AY.4	0.000591
ORF1ab/nsp13	105	D105Y	Gac	Tac	323	323	C.36.3.1	0.877717
ORF1ab/nsp13	105	D105del	GAC	---	301	301	All	0.000058
ORF1ab/nsp13	105	D105del	GAC	---	195	195	B.1.1.7	0.000175
ORF1ab/nsp13	105	D105G	gAc	gGc	190	191	All	0.000036
ORF1ab/nsp13	105	D105G	gAC	gGG	1	191	All	0
ORF1ab/nsp13	105	D105A	gAc	gCc	161	164	All	0.000031
ORF1ab/nsp13	105	D105A	gAC	gCT	2	164	All	0
ORF1ab/nsp13	105	D105A	gAC	gCA	1	164	All	0
ORF1ab/nsp13	105	D105N	Gac	Aac	152	152	All	0.000029
ORF1ab/nsp13	105	D105A	gAc	gCc	129	131	B.1.1.525	0.704918
ORF1ab/nsp13	105	D105A	gAC	gCT	2	131	B.1.1.525	0.010929
ORF1ab/nsp13	105	D105D	gaC	gaT	66	66	B.1.438.1	0.007079
ORF1ab/nsp13	105	D105N	Gac	Aac	51	51	B.1.1.7	0.000046
ORF1ab/nsp13	105	D105G	gAc	gGc	50	50	B.1.2	0.00044
ORF1ab/nsp13	105	D105G	gAc	gGc	46	46	B.1.1.311	0.016476
ORF1ab/nsp13	105	D105G	gAc	gGc	40	40	B.1.1.7	0.000036
ORF1ab/nsp13	105	D105Y	Gac	Tac	34	34	C.36	0.030965
ORF1ab/nsp13	105	D105N	Gac	Aac	33	33	AD.2	0.007226
ORF1ab/nsp13	105	D105E	gaC	gaA	28	29	All	0.000005
ORF1ab/nsp13	105	D105E	gaC	gaG	1	29	All	0
ORF1ab/nsp13	105	D105D	gaC	gaT	29	29	B.1.429	0.000682
ORF1ab/nsp13	105	D105del	GAC	---	26	26	B.1.177	0.000342
ORF1ab/nsp13	105	D105G	gAc	gGc	26	26	B.1.221	0.001847
ORF1ab/nsp13	105	D105Y	Gac	Tac	22	22	B.1	0.000202
ORF1ab/nsp13	105	D105D	gaC	gaT	21	21	B.1.1.7	0.000019
ORF1ab/nsp13	105	D105D	gaC	gaT	20	20	AY.3	0.000199
ORF1ab/nsp13	105	D105D	gaC	gaT	16	16	B.1	0.000147
ORF1ab/nsp13	105	D105D	gaC	gaT	15	15	B.1.2	0.000132
ORF1ab/nsp13	105	D105D	gaC	gaT	15	15	B.1.36.29	0.00776
ORF1ab/nsp13	105	D105del	GAC	---	14	14	AZ.2	0.011494
ORF1ab/nsp13	105	D105Y	Gac	Tac	14	14	B.1.1.7	0.000013
ORF1ab/nsp13	105	D105N	Gac	Aac	13	13	B.1.351	0.000386
ORF1ab/nsp13	105	D105A	gAc	gCc	12	12	B.1.1.7	0.000011
ORF1ab/nsp13	105	D105N	Gac	Aac	11	11	B.1.1.294	0.013924
ORF1ab/nsp13	105	D105D	gaC	gaT	11	11	P.1	0.000173
ORF1ab/nsp13	105	D105V	gAc	gTc	10	10	All	0.000002
ORF1ab/nsp13	105	D105del	GAC	---	10	10	B.1.1	0.000181
ORF1ab/nsp13	105	D105N	Gac	Aac	10	10	B.1.177	0.000132
ORF1ab/nsp13	105	D105Y	Gac	Tac	9	9	B.1.1	0.000163
ORF1ab/nsp13	105	D105D	gaC	gaT	9	9	B.1.617.2	0.000034
ORF1ab/nsp13	105	D105D	gaC	gaT	8	8	AY.25	0.000048
ORF1ab/nsp13	105	D105D	gaC	gaT	8	8	B.1.1	0.000145
ORF1ab/nsp13	105	D105D	gaC	gaT	8	8	B.1.427	0.000404
ORF1ab/nsp13	105	D105Y	Gac	Tac	7	7	AY.44	0.000043
ORF1ab/nsp13	105	D105V	gAc	gTc	7	7	B.1.1.525	0.038251
ORF1ab/nsp13	105	D105D	gaC	gaT	7	7	B.1.221	0.000497
ORF1ab/nsp13	105	D105del	GAC	---	6	6	AD.2	0.001314
ORF1ab/nsp13	105	D105A	gAc	gCc	6	6	B.1.1	0.000109
ORF1ab/nsp13	105	D105D	gaC	gaT	6	6	B.1.234	0.000792
ORF1ab/nsp13	105	D105D	gaC	gaT	5	5	AY.103	0.000031
ORF1ab/nsp13	105	D105D	gaC	gaT	5	5	AY.20	0.000194
ORF1ab/nsp13	105	D105E	gaC	gaA	5	5	AY.75	0.00028
ORF1ab/nsp13	105	D105N	Gac	Aac	5	5	B.1	0.000046
ORF1ab/nsp13	105	D105A	gAc	gCc	5	5	B.1	0.000046
ORF1ab/nsp13	105	D105Y	Gac	Tac	5	5	B.1.1.294	0.006329
ORF1ab/nsp13	105	D105D	gaC	gaT	5	5	B.1.177	0.000066
ORF1ab/nsp13	105	D105D	gaC	gaT	5	5	B.1.177.60	0.001092
ORF1ab/nsp13	105	D105Y	Gac	Tac	5	5	C.35	0.00387
ORF1ab/nsp13	105	D105N	Gac	Aac	4	4		0.222222
ORF1ab/nsp13	105	D105del	GAC	---	4	4		0.222222
ORF1ab/nsp13	105	D105D	gaC	gaT	4	4	AY.43	0.000018
ORF1ab/nsp13	105	D105G	gAc	gGc	3	4	B.1.1	0.000054
ORF1ab/nsp13	105	D105G	gAC	gGG	1	4	B.1.1	0.000018
ORF1ab/nsp13	105	D105N	Gac	Aac	4	4	B.1.1.220	0.007435
ORF1ab/nsp13	105	D105del	GAC	---	4	4	B.1.1.44	0.009639
ORF1ab/nsp13	105	D105D	gaC	gaT	4	4	B.1.575.1	0.009756
ORF1ab/nsp13	105	D105D	gaC	gaT	4	4	B.1.617.1	0.000516
ORF1ab/nsp13	105	D105Y	Gac	Tac	4	4	P.1	0.000063
ORF1ab/nsp13	105	D105D	gaC	gaT	3	3	AY.120	0.000112
ORF1ab/nsp13	105	D105del	GAC	---	3	3	AY.44	0.000018
ORF1ab/nsp13	105	D105D	gaC	gaT	3	3	AY.5	0.000062
ORF1ab/nsp13	105	D105del	GAC	---	3	3	B.1	0.000027
ORF1ab/nsp13	105	D105Y	Gac	Tac	3	3	B.1.1.1	0.00098
ORF1ab/nsp13	105	D105D	gaC	gaT	3	3	B.1.1.113	0.020979
ORF1ab/nsp13	105	D105D	gaC	gaT	3	3	B.1.1.253	0.007519
ORF1ab/nsp13	105	D105del	GAC	---	3	3	B.1.1.305	0.011583
ORF1ab/nsp13	105	D105Y	Gac	Tac	3	3	B.1.1.372	0.002066
ORF1ab/nsp13	105	D105G	gAc	gGc	3	3	B.1.177	0.00004
ORF1ab/nsp13	105	D105G	gAc	gGc	3	3	B.1.582	0.001472
ORF1ab/nsp13	105	D105N	Gac	Aac	3	3	B.1.617.1	0.000387
ORF1ab/nsp13	105	D105E	gaC	gaA	3	3	B.1.617.2	0.000011
ORF1ab/nsp13	105	D105D	gaC	gaT	3	3	P.1.14	0.000143
ORF1ab/nsp13	105	D105del	GAC	---	3	3	Q.1	0.000379
ORF1ab/nsp13	105	D105Y	Gac	Tac	2	2	A	0.000774
ORF1ab/nsp13	105	D105H	Gac	Cac	2	2	All	0
ORF1ab/nsp13	105	D105D	gaC	gaT	2	2	AY.102	0.000053
ORF1ab/nsp13	105	D105N	Gac	Aac	2	2	AY.118	0.000125
ORF1ab/nsp13	105	D105E	gaC	gaA	2	2	AY.4	0.000003
ORF1ab/nsp13	105	D105del	GAC	---	2	2	AY.43	0.000009
ORF1ab/nsp13	105	D105N	Gac	Aac	2	2	AY.9.1	0.000167
ORF1ab/nsp13	105	D105D	gaC	gaT	2	2	AY.9.2	0.000073
ORF1ab/nsp13	105	D105G	gAc	gGc	2	2	B.1	0.000018
ORF1ab/nsp13	105	D105E	gaC	gaA	2	2	B.1	0.000018
ORF1ab/nsp13	105	D105G	gAc	gGc	2	2	B.1.1.25	0.001137
ORF1ab/nsp13	105	D105del	GAC	---	2	2	B.1.1.315	0.016949
ORF1ab/nsp13	105	D105E	gaC	gaA	2	2	B.1.1.7	0.000002
ORF1ab/nsp13	105	D105D	gaC	gaT	2	2	B.1.160	0.000062
ORF1ab/nsp13	105	D105Y	Gac	Tac	2	2	B.1.177	0.000026
ORF1ab/nsp13	105	D105A	gAc	gCc	2	2	B.1.177	0.000026
ORF1ab/nsp13	105	D105Y	Gac	Tac	2	2	B.1.177.10	0.001756
ORF1ab/nsp13	105	D105E	gaC	gaA	2	2	B.1.2	0.000018
ORF1ab/nsp13	105	D105Y	Gac	Tac	2	2	B.1.427	0.000101
ORF1ab/nsp13	105	D105G	gAc	gGc	2	2	B.1.617.1	0.000258
ORF1ab/nsp13	105	D105G	gAc	gGc	2	2	B.1.617.2	0.000008
ORF1ab/nsp13	105	D105Y	Gac	Tac	2	2	B.1.81	0.042553
ORF1ab/nsp13	105	D105G	gAc	gGc	2	2	C.13	0.051282
ORF1ab/nsp13	105	D105D	gaC	gaT	2	2	C.39	0.037736
ORF1ab/nsp13	105	D105G	gAc	gGc	2	2	P.1	0.000032
ORF1ab/nsp13	105	D105N	Gac	Aac	1	1	A	0.000387
ORF1ab/nsp13	105	D105V	gAc	gTc	1	1	A.2	0.000662
ORF1ab/nsp13	105	D105N	Gac	Aac	1	1	A.30	0.142857
ORF1ab/nsp13	105	D105D	gaC	gaT	1	1	AF.1	0.037037
ORF1ab/nsp13	105	D105W	GAC	TGG	1	1	All	0
ORF1ab/nsp13	105	D105S	GAc	AGc	1	1	All	0
ORF1ab/nsp13	105	D105C	GAc	TGc	1	1	All	0
ORF1ab/nsp13	105	D105X	GaC	TaG	1	1	All	0
ORF1ab/nsp13	105	D105del2	GAC	--N	1	1	All	0
ORF1ab/nsp13	105	D105del1	gaC	ga-	1	1	All	0
ORF1ab/nsp13	105	D105del	GAC	---	1	1	AT.1	0.005128
ORF1ab/nsp13	105	D105E	gaC	gaA	1	1	AY.103	0.000006
ORF1ab/nsp13	105	D105D	gaC	gaT	1	1	AY.113	0.000142
ORF1ab/nsp13	105	D105D	gaC	gaT	1	1	AY.114	0.000231
ORF1ab/nsp13	105	D105D	gaC	gaT	1	1	AY.118	0.000063
ORF1ab/nsp13	105	D105D	gaC	gaT	1	1	AY.119	0.000035
ORF1ab/nsp13	105	D105Y	Gac	Tac	1	1	AY.120	0.000037
ORF1ab/nsp13	105	D105D	gaC	gaT	1	1	AY.120.2	0.001285
ORF1ab/nsp13	105	D105Y	Gac	Tac	1	1	AY.121	0.000135
ORF1ab/nsp13	105	D105D	gaC	gaT	1	1	AY.13	0.000161
ORF1ab/nsp13	105	D105D	gaC	gaT	1	1	AY.24	0.000431
ORF1ab/nsp13	105	D105del	GAC	---	1	1	AY.24	0.000431
ORF1ab/nsp13	105	D105Y	Gac	Tac	1	1	AY.25	0.000006
ORF1ab/nsp13	105	D105Y	Gac	Tac	1	1	AY.26	0.000028
ORF1ab/nsp13	105	D105A	gAc	gCc	1	1	AY.26	0.000028
ORF1ab/nsp13	105	D105D	gaC	gaT	1	1	AY.29	0.000016
ORF1ab/nsp13	105	D105E	gaC	gaA	1	1	AY.3	0.00001
ORF1ab/nsp13	105	D105N	Gac	Aac	1	1	AY.4	0.000002
ORF1ab/nsp13	105	D105H	Gac	Cac	1	1	AY.4	0.000002
ORF1ab/nsp13	105	D105del	GAC	---	1	1	AY.4	0.000002
ORF1ab/nsp13	105	D105D	gaC	gaT	1	1	AY.4.2	0.000022
ORF1ab/nsp13	105	D105Y	Gac	Tac	1	1	AY.4.2	0.000022
ORF1ab/nsp13	105	D105E	gaC	gaA	1	1	AY.4.2	0.000022
ORF1ab/nsp13	105	D105N	Gac	Aac	1	1	AY.4.2	0.000022
ORF1ab/nsp13	105	D105Y	Gac	Tac	1	1	AY.4.4	0.000409
ORF1ab/nsp13	105	D105D	gaC	gaT	1	1	AY.42	0.00004
ORF1ab/nsp13	105	D105E	gaC	gaA	1	1	AY.42	0.00004
ORF1ab/nsp13	105	D105N	Gac	Aac	1	1	AY.43	0.000004
ORF1ab/nsp13	105	D105Y	Gac	Tac	1	1	AY.43	0.000004
ORF1ab/nsp13	105	D105E	gaC	gaA	1	1	AY.43	0.000004
ORF1ab/nsp13	105	D105N	Gac	Aac	1	1	AY.44	0.000006
ORF1ab/nsp13	105	D105S	GAc	AGc	1	1	AY.44	0.000006
ORF1ab/nsp13	105	D105D	gaC	gaT	1	1	AY.44	0.000006
ORF1ab/nsp13	105	D105del	GAC	---	1	1	AY.46	0.000104
ORF1ab/nsp13	105	D105D	gaC	gaT	1	1	AY.46	0.000104
ORF1ab/nsp13	105	D105E	gaC	gaA	1	1	AY.47	0.000031
ORF1ab/nsp13	105	D105D	gaC	gaT	1	1	AY.54	0.000095
ORF1ab/nsp13	105	D105E	gaC	gaA	1	1	AY.61	0.000105
ORF1ab/nsp13	105	D105H	Gac	Cac	1	1	AY.62	0.000436
ORF1ab/nsp13	105	D105V	gAc	gTc	1	1	AY.69	0.000187
ORF1ab/nsp13	105	D105D	gaC	gaT	1	1	AY.71	0.000475
ORF1ab/nsp13	105	D105D	gaC	gaT	1	1	AY.9	0.000068
ORF1ab/nsp13	105	D105del	GAC	---	1	1	AY.9	0.000068
ORF1ab/nsp13	105	D105Y	Gac	Tac	1	1	B	0.000128
ORF1ab/nsp13	105	D105E	gaC	gaG	1	1	B.1.1	0.000018
ORF1ab/nsp13	105	D105X	GaC	TaG	1	1	B.1.1	0.000018
ORF1ab/nsp13	105	D105C	GAc	TGc	1	1	B.1.1	0.000018
ORF1ab/nsp13	105	D105W	GAC	TGG	1	1	B.1.1	0.000018
ORF1ab/nsp13	105	D105del	GAC	---	1	1	B.1.1.197	0.037037
ORF1ab/nsp13	105	D105E	gaC	gaA	1	1	B.1.1.222	0.000204
ORF1ab/nsp13	105	D105D	gaC	gaT	1	1	B.1.1.222	0.000204
ORF1ab/nsp13	105	D105del	GAC	---	1	1	B.1.1.231	0.003096
ORF1ab/nsp13	105	D105D	gaC	gaT	1	1	B.1.1.28	0.000311
ORF1ab/nsp13	105	D105D	gaC	gaT	1	1	B.1.1.284	0.000107
ORF1ab/nsp13	105	D105D	gaC	gaT	1	1	B.1.1.291	0.000742
ORF1ab/nsp13	105	D105del	GAC	---	1	1	B.1.1.306	0.000438
ORF1ab/nsp13	105	D105A	gAc	gCc	1	1	B.1.1.317	0.000412
ORF1ab/nsp13	105	D105del	GAC	---	1	1	B.1.1.318	0.000302
ORF1ab/nsp13	105	D105N	Gac	Aac	1	1	B.1.1.380	0.009804
ORF1ab/nsp13	105	D105G	gAc	gGc	1	1	B.1.1.397	0.002252
ORF1ab/nsp13	105	D105del	GAC	---	1	1	B.1.1.51	0.001718
ORF1ab/nsp13	105	D105del	GAC	---	1	1	B.1.1.521	0.005348
ORF1ab/nsp13	105	D105Y	Gac	Tac	1	1	B.1.1.61	0.008772
ORF1ab/nsp13	105	D105del1	gaC	ga-	1	1	B.1.1.7	0.000001
ORF1ab/nsp13	105	D105V	gAc	gTc	1	1	B.1.1.7	0.000001
ORF1ab/nsp13	105	D105del	GAC	---	1	1	B.1.1.70	0.000341
ORF1ab/nsp13	105	D105del	GAC	---	1	1	B.1.140	0.018868
ORF1ab/nsp13	105	D105N	Gac	Aac	1	1	B.1.160	0.000031
ORF1ab/nsp13	105	D105del2	GAC	--N	1	1	B.1.177	0.000013
ORF1ab/nsp13	105	D105N	Gac	Aac	1	1	B.1.177.16	0.000664
ORF1ab/nsp13	105	D105D	gaC	gaT	1	1	B.1.177.23	0.003236
ORF1ab/nsp13	105	D105del	GAC	---	1	1	B.1.177.73	0.000566
ORF1ab/nsp13	105	D105E	gaC	gaA	1	1	B.1.177.75	0.001041
ORF1ab/nsp13	105	D105del	GAC	---	1	1	B.1.177.83	0.001481
ORF1ab/nsp13	105	D105Y	Gac	Tac	1	1	B.1.2	0.000009
ORF1ab/nsp13	105	D105del	GAC	---	1	1	B.1.2	0.000009
ORF1ab/nsp13	105	D105G	gAc	gGc	1	1	B.1.234	0.000132
ORF1ab/nsp13	105	D105D	gaC	gaT	1	1	B.1.240	0.000216
ORF1ab/nsp13	105	D105A	gAC	gCA	1	1	B.1.242	0.018868
ORF1ab/nsp13	105	D105del	GAC	---	1	1	B.1.242	0.018868
ORF1ab/nsp13	105	D105Y	Gac	Tac	1	1	B.1.243	0.00007
ORF1ab/nsp13	105	D105D	gaC	gaT	1	1	B.1.243	0.00007
ORF1ab/nsp13	105	D105N	Gac	Aac	1	1	B.1.243.1	0.022222
ORF1ab/nsp13	105	D105del	GAC	---	1	1	B.1.258.17	0.000104
ORF1ab/nsp13	105	D105D	gaC	gaT	1	1	B.1.260	0.003344
ORF1ab/nsp13	105	D105E	gaC	gaA	1	1	B.1.298	0.002114
ORF1ab/nsp13	105	D105A	gAc	gCc	1	1	B.1.351	0.00003
ORF1ab/nsp13	105	D105E	gaC	gaA	1	1	B.1.351	0.00003
ORF1ab/nsp13	105	D105del	GAC	---	1	1	B.1.351.2	0.000303
ORF1ab/nsp13	105	D105del	GAC	---	1	1	B.1.36	0.000146
ORF1ab/nsp13	105	D105D	gaC	gaT	1	1	B.1.36.17	0.000494
ORF1ab/nsp13	105	D105Y	Gac	Tac	1	1	B.1.375	0.00082
ORF1ab/nsp13	105	D105G	gAc	gGc	1	1	B.1.416	0.001269
ORF1ab/nsp13	105	D105del	GAC	---	1	1	B.1.416.1	0.001563
ORF1ab/nsp13	105	D105A	gAc	gCc	1	1	B.1.438.1	0.000107
ORF1ab/nsp13	105	D105del	GAC	---	1	1	B.1.438.1	0.000107
ORF1ab/nsp13	105	D105G	gAc	gGc	1	1	B.1.468	0.005714
ORF1ab/nsp13	105	D105D	gaC	gaT	1	1	B.1.526	0.000024
ORF1ab/nsp13	105	D105D	gaC	gaT	1	1	B.1.533	0.009615
ORF1ab/nsp13	105	D105Y	Gac	Tac	1	1	B.1.550	0.013699
ORF1ab/nsp13	105	D105Y	Gac	Tac	1	1	B.1.561	0.000397
ORF1ab/nsp13	105	D105A	gAc	gCc	1	1	B.1.596	0.000087
ORF1ab/nsp13	105	D105del	GAC	---	1	1	B.1.617.1	0.000129
ORF1ab/nsp13	105	D105del	GAC	---	1	1	B.1.617.2	0.000004
ORF1ab/nsp13	105	D105N	Gac	Aac	1	1	B.1.617.2	0.000004
ORF1ab/nsp13	105	D105del	GAC	---	1	1	B.1.91	0.002075
ORF1ab/nsp13	105	D105Y	Gac	Tac	1	1	B.1.91	0.002075
ORF1ab/nsp13	105	D105N	Gac	Aac	1	1	B.3	0.000831
ORF1ab/nsp13	105	D105N	Gac	Aac	1	1	B.35	0.007812
ORF1ab/nsp13	105	D105D	gaC	gaT	1	1	B.38	0.02381
ORF1ab/nsp13	105	D105G	gAc	gGc	1	1	B.40	0.000364
ORF1ab/nsp13	105	D105Y	Gac	Tac	1	1	C.16	0.00106
ORF1ab/nsp13	105	D105Y	Gac	Tac	1	1	C.39	0.018868
ORF1ab/nsp13	105	D105D	gaC	gaT	1	1	D.2	0.000075
ORF1ab/nsp13	105	D105G	gAc	gGc	1	1	D.2	0.000075
ORF1ab/nsp13	105	D105E	gaC	gaA	1	1	P.1	0.000016
ORF1ab/nsp13	105	D105del	GAC	---	1	1	P.1.1	0.000318
ORF1ab/nsp13	105	D105A	gAc	gCc	1	1	P.1.1	0.000318
ORF1ab/nsp13	105	D105N	Gac	Aac	1	1	P.1.12	0.000484
ORF1ab/nsp13	105	D105A	gAc	gCc	1	1	P.1.14	0.000048
ORF1ab/nsp13	105	D105D	gaC	gaT	1	1	P.3	0.001595
ORF1ab/nsp13	105	D105G	gAc	gGc	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.