CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp13 | 105 | D105Y | D5429Y | nonsyn | Gac | Tac | 2193 | 2193 | 1 | 16549-16551 |
ORF1ab/nsp13 | 105 | D105D | D5429D | syn | gaC | gaT | 704 | 704 | 1 | 16549-16551 |
ORF1ab/nsp13 | 105 | D105del | D5429del | del | GAC | --- | 301 | 301 | 1 | 16549-16551 |
ORF1ab/nsp13 | 105 | D105G | D5429G | nonsyn | gAc | gGc | 191 | 190 | 0.994764 | 16549-16551 |
ORF1ab/nsp13 | 105 | D105G | D5429G | nonsyn | gAC | gGG | 191 | 1 | 0.0052356 | 16549-16551 |
ORF1ab/nsp13 | 105 | D105A | D5429A | nonsyn | gAc | gCc | 164 | 161 | 0.981707 | 16549-16551 |
ORF1ab/nsp13 | 105 | D105A | D5429A | nonsyn | gAC | gCT | 164 | 2 | 0.0121951 | 16549-16551 |
ORF1ab/nsp13 | 105 | D105A | D5429A | nonsyn | gAC | gCA | 164 | 1 | 0.00609756 | 16549-16551 |
ORF1ab/nsp13 | 105 | D105N | D5429N | nonsyn | Gac | Aac | 152 | 152 | 1 | 16549-16551 |
ORF1ab/nsp13 | 105 | D105E | D5429E | nonsyn | gaC | gaA | 29 | 28 | 0.965517 | 16549-16551 |
ORF1ab/nsp13 | 105 | D105E | D5429E | nonsyn | gaC | gaG | 29 | 1 | 0.0344828 | 16549-16551 |
ORF1ab/nsp13 | 105 | D105V | D5429V | nonsyn | gAc | gTc | 10 | 10 | 1 | 16549-16551 |
ORF1ab/nsp13 | 105 | D105H | D5429H | nonsyn | Gac | Cac | 2 | 2 | 1 | 16549-16551 |
ORF1ab/nsp13 | 105 | D105S | D5429S | nonsyn | GAc | AGc | 1 | 1 | 1 | 16549-16551 |
ORF1ab/nsp13 | 105 | D105W | D5429W | nonsyn | GAC | TGG | 1 | 1 | 1 | 16549-16551 |
ORF1ab/nsp13 | 105 | D105C | D5429C | nonsyn | GAc | TGc | 1 | 1 | 1 | 16549-16551 |
ORF1ab/nsp13 | 105 | D105X | D5429X | nonsyn | GaC | TaG | 1 | 1 | 1 | 16549-16551 |
ORF1ab/nsp13 | 105 | D105del1 | D5429del1 | del | gaC | ga- | 1 | 1 | 1 | 16549-16551 |
ORF1ab/nsp13 | 105 | D105del2 | D5429del2 | del | GAC | --N | 1 | 1 | 1 | 16549-16551 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 2193 | 2193 | All | 0.000419 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 1737 | 1737 | C.36.3 | 0.985252 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 704 | 704 | All | 0.000135 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 380 | 380 | AY.4 | 0.000591 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 323 | 323 | C.36.3.1 | 0.877717 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 301 | 301 | All | 0.000058 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 195 | 195 | B.1.1.7 | 0.000175 |
ORF1ab/nsp13 | 105 | D105G | gAc | gGc | 190 | 191 | All | 0.000036 |
ORF1ab/nsp13 | 105 | D105G | gAC | gGG | 1 | 191 | All | 0 |
ORF1ab/nsp13 | 105 | D105A | gAc | gCc | 161 | 164 | All | 0.000031 |
ORF1ab/nsp13 | 105 | D105A | gAC | gCT | 2 | 164 | All | 0 |
ORF1ab/nsp13 | 105 | D105A | gAC | gCA | 1 | 164 | All | 0 |
ORF1ab/nsp13 | 105 | D105N | Gac | Aac | 152 | 152 | All | 0.000029 |
ORF1ab/nsp13 | 105 | D105A | gAc | gCc | 129 | 131 | B.1.1.525 | 0.704918 |
ORF1ab/nsp13 | 105 | D105A | gAC | gCT | 2 | 131 | B.1.1.525 | 0.010929 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 66 | 66 | B.1.438.1 | 0.007079 |
ORF1ab/nsp13 | 105 | D105N | Gac | Aac | 51 | 51 | B.1.1.7 | 0.000046 |
ORF1ab/nsp13 | 105 | D105G | gAc | gGc | 50 | 50 | B.1.2 | 0.00044 |
ORF1ab/nsp13 | 105 | D105G | gAc | gGc | 46 | 46 | B.1.1.311 | 0.016476 |
ORF1ab/nsp13 | 105 | D105G | gAc | gGc | 40 | 40 | B.1.1.7 | 0.000036 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 34 | 34 | C.36 | 0.030965 |
ORF1ab/nsp13 | 105 | D105N | Gac | Aac | 33 | 33 | AD.2 | 0.007226 |
ORF1ab/nsp13 | 105 | D105E | gaC | gaA | 28 | 29 | All | 0.000005 |
ORF1ab/nsp13 | 105 | D105E | gaC | gaG | 1 | 29 | All | 0 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 29 | 29 | B.1.429 | 0.000682 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 26 | 26 | B.1.177 | 0.000342 |
ORF1ab/nsp13 | 105 | D105G | gAc | gGc | 26 | 26 | B.1.221 | 0.001847 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 22 | 22 | B.1 | 0.000202 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 21 | 21 | B.1.1.7 | 0.000019 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 20 | 20 | AY.3 | 0.000199 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 16 | 16 | B.1 | 0.000147 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 15 | 15 | B.1.2 | 0.000132 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 15 | 15 | B.1.36.29 | 0.00776 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 14 | 14 | AZ.2 | 0.011494 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 14 | 14 | B.1.1.7 | 0.000013 |
ORF1ab/nsp13 | 105 | D105N | Gac | Aac | 13 | 13 | B.1.351 | 0.000386 |
ORF1ab/nsp13 | 105 | D105A | gAc | gCc | 12 | 12 | B.1.1.7 | 0.000011 |
ORF1ab/nsp13 | 105 | D105N | Gac | Aac | 11 | 11 | B.1.1.294 | 0.013924 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 11 | 11 | P.1 | 0.000173 |
ORF1ab/nsp13 | 105 | D105V | gAc | gTc | 10 | 10 | All | 0.000002 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 10 | 10 | B.1.1 | 0.000181 |
ORF1ab/nsp13 | 105 | D105N | Gac | Aac | 10 | 10 | B.1.177 | 0.000132 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 9 | 9 | B.1.1 | 0.000163 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 8 | 8 | AY.25 | 0.000048 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 8 | 8 | B.1.427 | 0.000404 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp13 | 105 | D105V | gAc | gTc | 7 | 7 | B.1.1.525 | 0.038251 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 7 | 7 | B.1.221 | 0.000497 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 6 | 6 | AD.2 | 0.001314 |
ORF1ab/nsp13 | 105 | D105A | gAc | gCc | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 6 | 6 | B.1.234 | 0.000792 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp13 | 105 | D105E | gaC | gaA | 5 | 5 | AY.75 | 0.00028 |
ORF1ab/nsp13 | 105 | D105N | Gac | Aac | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp13 | 105 | D105A | gAc | gCc | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 5 | 5 | B.1.1.294 | 0.006329 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 5 | 5 | B.1.177.60 | 0.001092 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 5 | 5 | C.35 | 0.00387 |
ORF1ab/nsp13 | 105 | D105N | Gac | Aac | 4 | 4 | 0.222222 | |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp13 | 105 | D105G | gAc | gGc | 3 | 4 | B.1.1 | 0.000054 |
ORF1ab/nsp13 | 105 | D105G | gAC | gGG | 1 | 4 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 105 | D105N | Gac | Aac | 4 | 4 | B.1.1.220 | 0.007435 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 4 | 4 | B.1.1.44 | 0.009639 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 4 | 4 | B.1.575.1 | 0.009756 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 3 | 3 | B.1.1.113 | 0.020979 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 3 | 3 | B.1.1.253 | 0.007519 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 3 | 3 | B.1.1.305 | 0.011583 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 3 | 3 | B.1.1.372 | 0.002066 |
ORF1ab/nsp13 | 105 | D105G | gAc | gGc | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp13 | 105 | D105G | gAc | gGc | 3 | 3 | B.1.582 | 0.001472 |
ORF1ab/nsp13 | 105 | D105N | Gac | Aac | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp13 | 105 | D105E | gaC | gaA | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 2 | 2 | A | 0.000774 |
ORF1ab/nsp13 | 105 | D105H | Gac | Cac | 2 | 2 | All | 0 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp13 | 105 | D105N | Gac | Aac | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp13 | 105 | D105E | gaC | gaA | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp13 | 105 | D105N | Gac | Aac | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp13 | 105 | D105G | gAc | gGc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp13 | 105 | D105E | gaC | gaA | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp13 | 105 | D105G | gAc | gGc | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 2 | 2 | B.1.1.315 | 0.016949 |
ORF1ab/nsp13 | 105 | D105E | gaC | gaA | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp13 | 105 | D105A | gAc | gCc | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 2 | 2 | B.1.177.10 | 0.001756 |
ORF1ab/nsp13 | 105 | D105E | gaC | gaA | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp13 | 105 | D105G | gAc | gGc | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp13 | 105 | D105G | gAc | gGc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 2 | 2 | B.1.81 | 0.042553 |
ORF1ab/nsp13 | 105 | D105G | gAc | gGc | 2 | 2 | C.13 | 0.051282 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 2 | 2 | C.39 | 0.037736 |
ORF1ab/nsp13 | 105 | D105G | gAc | gGc | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp13 | 105 | D105N | Gac | Aac | 1 | 1 | A | 0.000387 |
ORF1ab/nsp13 | 105 | D105V | gAc | gTc | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp13 | 105 | D105N | Gac | Aac | 1 | 1 | A.30 | 0.142857 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 1 | 1 | AF.1 | 0.037037 |
ORF1ab/nsp13 | 105 | D105W | GAC | TGG | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 105 | D105S | GAc | AGc | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 105 | D105C | GAc | TGc | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 105 | D105X | GaC | TaG | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 105 | D105del2 | GAC | --N | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 105 | D105del1 | gaC | ga- | 1 | 1 | All | 0 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp13 | 105 | D105E | gaC | gaA | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 105 | D105A | gAc | gCc | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp13 | 105 | D105E | gaC | gaA | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp13 | 105 | D105N | Gac | Aac | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 105 | D105H | Gac | Cac | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp13 | 105 | D105E | gaC | gaA | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp13 | 105 | D105N | Gac | Aac | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp13 | 105 | D105E | gaC | gaA | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp13 | 105 | D105N | Gac | Aac | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 105 | D105E | gaC | gaA | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp13 | 105 | D105N | Gac | Aac | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 105 | D105S | GAc | AGc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp13 | 105 | D105E | gaC | gaA | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp13 | 105 | D105E | gaC | gaA | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp13 | 105 | D105H | Gac | Cac | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp13 | 105 | D105V | gAc | gTc | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 1 | 1 | B | 0.000128 |
ORF1ab/nsp13 | 105 | D105E | gaC | gaG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 105 | D105X | GaC | TaG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 105 | D105C | GAc | TGc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 105 | D105W | GAC | TGG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 1 | 1 | B.1.1.197 | 0.037037 |
ORF1ab/nsp13 | 105 | D105E | gaC | gaA | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp13 | 105 | D105A | gAc | gCc | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp13 | 105 | D105N | Gac | Aac | 1 | 1 | B.1.1.380 | 0.009804 |
ORF1ab/nsp13 | 105 | D105G | gAc | gGc | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 1 | 1 | B.1.1.61 | 0.008772 |
ORF1ab/nsp13 | 105 | D105del1 | gaC | ga- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 105 | D105V | gAc | gTc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp13 | 105 | D105N | Gac | Aac | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp13 | 105 | D105del2 | GAC | --N | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp13 | 105 | D105N | Gac | Aac | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp13 | 105 | D105E | gaC | gaA | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp13 | 105 | D105G | gAc | gGc | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp13 | 105 | D105A | gAC | gCA | 1 | 1 | B.1.242 | 0.018868 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 1 | 1 | B.1.242 | 0.018868 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp13 | 105 | D105N | Gac | Aac | 1 | 1 | B.1.243.1 | 0.022222 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp13 | 105 | D105E | gaC | gaA | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp13 | 105 | D105A | gAc | gCc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 105 | D105E | gaC | gaA | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp13 | 105 | D105G | gAc | gGc | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp13 | 105 | D105A | gAc | gCc | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp13 | 105 | D105G | gAc | gGc | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 1 | 1 | B.1.550 | 0.013699 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp13 | 105 | D105A | gAc | gCc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 105 | D105N | Gac | Aac | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 1 | 1 | B.1.91 | 0.002075 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 1 | 1 | B.1.91 | 0.002075 |
ORF1ab/nsp13 | 105 | D105N | Gac | Aac | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp13 | 105 | D105N | Gac | Aac | 1 | 1 | B.35 | 0.007812 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 1 | 1 | B.38 | 0.02381 |
ORF1ab/nsp13 | 105 | D105G | gAc | gGc | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp13 | 105 | D105Y | Gac | Tac | 1 | 1 | C.39 | 0.018868 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 105 | D105G | gAc | gGc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp13 | 105 | D105E | gaC | gaA | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp13 | 105 | D105del | GAC | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp13 | 105 | D105A | gAc | gCc | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp13 | 105 | D105N | Gac | Aac | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp13 | 105 | D105A | gAc | gCc | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp13 | 105 | D105D | gaC | gaT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp13 | 105 | D105G | gAc | gGc | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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