CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp13 : CodonNum = 105

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp13105D105YD5429YnonsynGacTac21932193116549-16551
ORF1ab/nsp13105D105DD5429DsyngaCgaT704704116549-16551
ORF1ab/nsp13105D105delD5429deldelGAC---301301116549-16551
ORF1ab/nsp13105D105GD5429GnonsyngAcgGc1911900.99476416549-16551
ORF1ab/nsp13105D105GD5429GnonsyngACgGG19110.005235616549-16551
ORF1ab/nsp13105D105AD5429AnonsyngAcgCc1641610.98170716549-16551
ORF1ab/nsp13105D105AD5429AnonsyngACgCT16420.012195116549-16551
ORF1ab/nsp13105D105AD5429AnonsyngACgCA16410.0060975616549-16551
ORF1ab/nsp13105D105ND5429NnonsynGacAac152152116549-16551
ORF1ab/nsp13105D105ED5429EnonsyngaCgaA29280.96551716549-16551
ORF1ab/nsp13105D105ED5429EnonsyngaCgaG2910.034482816549-16551
ORF1ab/nsp13105D105VD5429VnonsyngAcgTc1010116549-16551
ORF1ab/nsp13105D105HD5429HnonsynGacCac22116549-16551
ORF1ab/nsp13105D105SD5429SnonsynGAcAGc11116549-16551
ORF1ab/nsp13105D105WD5429WnonsynGACTGG11116549-16551
ORF1ab/nsp13105D105CD5429CnonsynGAcTGc11116549-16551
ORF1ab/nsp13105D105XD5429XnonsynGaCTaG11116549-16551
ORF1ab/nsp13105D105del1D5429del1delgaCga-11116549-16551
ORF1ab/nsp13105D105del2D5429del2delGAC--N11116549-16551

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp13105D105YGacTac21932193All0.000419
ORF1ab/nsp13105D105YGacTac17371737C.36.30.985252
ORF1ab/nsp13105D105DgaCgaT704704All0.000135
ORF1ab/nsp13105D105DgaCgaT380380AY.40.000591
ORF1ab/nsp13105D105YGacTac323323C.36.3.10.877717
ORF1ab/nsp13105D105delGAC---301301All0.000058
ORF1ab/nsp13105D105delGAC---195195B.1.1.70.000175
ORF1ab/nsp13105D105GgAcgGc190191All0.000036
ORF1ab/nsp13105D105GgACgGG1191All0
ORF1ab/nsp13105D105AgAcgCc161164All0.000031
ORF1ab/nsp13105D105AgACgCT2164All0
ORF1ab/nsp13105D105AgACgCA1164All0
ORF1ab/nsp13105D105NGacAac152152All0.000029
ORF1ab/nsp13105D105AgAcgCc129131B.1.1.5250.704918
ORF1ab/nsp13105D105AgACgCT2131B.1.1.5250.010929
ORF1ab/nsp13105D105DgaCgaT6666B.1.438.10.007079
ORF1ab/nsp13105D105NGacAac5151B.1.1.70.000046
ORF1ab/nsp13105D105GgAcgGc5050B.1.20.00044
ORF1ab/nsp13105D105GgAcgGc4646B.1.1.3110.016476
ORF1ab/nsp13105D105GgAcgGc4040B.1.1.70.000036
ORF1ab/nsp13105D105YGacTac3434C.360.030965
ORF1ab/nsp13105D105NGacAac3333AD.20.007226
ORF1ab/nsp13105D105EgaCgaA2829All0.000005
ORF1ab/nsp13105D105EgaCgaG129All0
ORF1ab/nsp13105D105DgaCgaT2929B.1.4290.000682
ORF1ab/nsp13105D105delGAC---2626B.1.1770.000342
ORF1ab/nsp13105D105GgAcgGc2626B.1.2210.001847
ORF1ab/nsp13105D105YGacTac2222B.10.000202
ORF1ab/nsp13105D105DgaCgaT2121B.1.1.70.000019
ORF1ab/nsp13105D105DgaCgaT2020AY.30.000199
ORF1ab/nsp13105D105DgaCgaT1616B.10.000147
ORF1ab/nsp13105D105DgaCgaT1515B.1.20.000132
ORF1ab/nsp13105D105DgaCgaT1515B.1.36.290.00776
ORF1ab/nsp13105D105delGAC---1414AZ.20.011494
ORF1ab/nsp13105D105YGacTac1414B.1.1.70.000013
ORF1ab/nsp13105D105NGacAac1313B.1.3510.000386
ORF1ab/nsp13105D105AgAcgCc1212B.1.1.70.000011
ORF1ab/nsp13105D105NGacAac1111B.1.1.2940.013924
ORF1ab/nsp13105D105DgaCgaT1111P.10.000173
ORF1ab/nsp13105D105VgAcgTc1010All0.000002
ORF1ab/nsp13105D105delGAC---1010B.1.10.000181
ORF1ab/nsp13105D105NGacAac1010B.1.1770.000132
ORF1ab/nsp13105D105YGacTac99B.1.10.000163
ORF1ab/nsp13105D105DgaCgaT99B.1.617.20.000034
ORF1ab/nsp13105D105DgaCgaT88AY.250.000048
ORF1ab/nsp13105D105DgaCgaT88B.1.10.000145
ORF1ab/nsp13105D105DgaCgaT88B.1.4270.000404
ORF1ab/nsp13105D105YGacTac77AY.440.000043
ORF1ab/nsp13105D105VgAcgTc77B.1.1.5250.038251
ORF1ab/nsp13105D105DgaCgaT77B.1.2210.000497
ORF1ab/nsp13105D105delGAC---66AD.20.001314
ORF1ab/nsp13105D105AgAcgCc66B.1.10.000109
ORF1ab/nsp13105D105DgaCgaT66B.1.2340.000792
ORF1ab/nsp13105D105DgaCgaT55AY.1030.000031
ORF1ab/nsp13105D105DgaCgaT55AY.200.000194
ORF1ab/nsp13105D105EgaCgaA55AY.750.00028
ORF1ab/nsp13105D105NGacAac55B.10.000046
ORF1ab/nsp13105D105AgAcgCc55B.10.000046
ORF1ab/nsp13105D105YGacTac55B.1.1.2940.006329
ORF1ab/nsp13105D105DgaCgaT55B.1.1770.000066
ORF1ab/nsp13105D105DgaCgaT55B.1.177.600.001092
ORF1ab/nsp13105D105YGacTac55C.350.00387
ORF1ab/nsp13105D105NGacAac440.222222
ORF1ab/nsp13105D105delGAC---440.222222
ORF1ab/nsp13105D105DgaCgaT44AY.430.000018
ORF1ab/nsp13105D105GgAcgGc34B.1.10.000054
ORF1ab/nsp13105D105GgACgGG14B.1.10.000018
ORF1ab/nsp13105D105NGacAac44B.1.1.2200.007435
ORF1ab/nsp13105D105delGAC---44B.1.1.440.009639
ORF1ab/nsp13105D105DgaCgaT44B.1.575.10.009756
ORF1ab/nsp13105D105DgaCgaT44B.1.617.10.000516
ORF1ab/nsp13105D105YGacTac44P.10.000063
ORF1ab/nsp13105D105DgaCgaT33AY.1200.000112
ORF1ab/nsp13105D105delGAC---33AY.440.000018
ORF1ab/nsp13105D105DgaCgaT33AY.50.000062
ORF1ab/nsp13105D105delGAC---33B.10.000027
ORF1ab/nsp13105D105YGacTac33B.1.1.10.00098
ORF1ab/nsp13105D105DgaCgaT33B.1.1.1130.020979
ORF1ab/nsp13105D105DgaCgaT33B.1.1.2530.007519
ORF1ab/nsp13105D105delGAC---33B.1.1.3050.011583
ORF1ab/nsp13105D105YGacTac33B.1.1.3720.002066
ORF1ab/nsp13105D105GgAcgGc33B.1.1770.00004
ORF1ab/nsp13105D105GgAcgGc33B.1.5820.001472
ORF1ab/nsp13105D105NGacAac33B.1.617.10.000387
ORF1ab/nsp13105D105EgaCgaA33B.1.617.20.000011
ORF1ab/nsp13105D105DgaCgaT33P.1.140.000143
ORF1ab/nsp13105D105delGAC---33Q.10.000379
ORF1ab/nsp13105D105YGacTac22A0.000774
ORF1ab/nsp13105D105HGacCac22All0
ORF1ab/nsp13105D105DgaCgaT22AY.1020.000053
ORF1ab/nsp13105D105NGacAac22AY.1180.000125
ORF1ab/nsp13105D105EgaCgaA22AY.40.000003
ORF1ab/nsp13105D105delGAC---22AY.430.000009
ORF1ab/nsp13105D105NGacAac22AY.9.10.000167
ORF1ab/nsp13105D105DgaCgaT22AY.9.20.000073
ORF1ab/nsp13105D105GgAcgGc22B.10.000018
ORF1ab/nsp13105D105EgaCgaA22B.10.000018
ORF1ab/nsp13105D105GgAcgGc22B.1.1.250.001137
ORF1ab/nsp13105D105delGAC---22B.1.1.3150.016949
ORF1ab/nsp13105D105EgaCgaA22B.1.1.70.000002
ORF1ab/nsp13105D105DgaCgaT22B.1.1600.000062
ORF1ab/nsp13105D105YGacTac22B.1.1770.000026
ORF1ab/nsp13105D105AgAcgCc22B.1.1770.000026
ORF1ab/nsp13105D105YGacTac22B.1.177.100.001756
ORF1ab/nsp13105D105EgaCgaA22B.1.20.000018
ORF1ab/nsp13105D105YGacTac22B.1.4270.000101
ORF1ab/nsp13105D105GgAcgGc22B.1.617.10.000258
ORF1ab/nsp13105D105GgAcgGc22B.1.617.20.000008
ORF1ab/nsp13105D105YGacTac22B.1.810.042553
ORF1ab/nsp13105D105GgAcgGc22C.130.051282
ORF1ab/nsp13105D105DgaCgaT22C.390.037736
ORF1ab/nsp13105D105GgAcgGc22P.10.000032
ORF1ab/nsp13105D105NGacAac11A0.000387
ORF1ab/nsp13105D105VgAcgTc11A.20.000662
ORF1ab/nsp13105D105NGacAac11A.300.142857
ORF1ab/nsp13105D105DgaCgaT11AF.10.037037
ORF1ab/nsp13105D105WGACTGG11All0
ORF1ab/nsp13105D105SGAcAGc11All0
ORF1ab/nsp13105D105CGAcTGc11All0
ORF1ab/nsp13105D105XGaCTaG11All0
ORF1ab/nsp13105D105del2GAC--N11All0
ORF1ab/nsp13105D105del1gaCga-11All0
ORF1ab/nsp13105D105delGAC---11AT.10.005128
ORF1ab/nsp13105D105EgaCgaA11AY.1030.000006
ORF1ab/nsp13105D105DgaCgaT11AY.1130.000142
ORF1ab/nsp13105D105DgaCgaT11AY.1140.000231
ORF1ab/nsp13105D105DgaCgaT11AY.1180.000063
ORF1ab/nsp13105D105DgaCgaT11AY.1190.000035
ORF1ab/nsp13105D105YGacTac11AY.1200.000037
ORF1ab/nsp13105D105DgaCgaT11AY.120.20.001285
ORF1ab/nsp13105D105YGacTac11AY.1210.000135
ORF1ab/nsp13105D105DgaCgaT11AY.130.000161
ORF1ab/nsp13105D105DgaCgaT11AY.240.000431
ORF1ab/nsp13105D105delGAC---11AY.240.000431
ORF1ab/nsp13105D105YGacTac11AY.250.000006
ORF1ab/nsp13105D105YGacTac11AY.260.000028
ORF1ab/nsp13105D105AgAcgCc11AY.260.000028
ORF1ab/nsp13105D105DgaCgaT11AY.290.000016
ORF1ab/nsp13105D105EgaCgaA11AY.30.00001
ORF1ab/nsp13105D105NGacAac11AY.40.000002
ORF1ab/nsp13105D105HGacCac11AY.40.000002
ORF1ab/nsp13105D105delGAC---11AY.40.000002
ORF1ab/nsp13105D105DgaCgaT11AY.4.20.000022
ORF1ab/nsp13105D105YGacTac11AY.4.20.000022
ORF1ab/nsp13105D105EgaCgaA11AY.4.20.000022
ORF1ab/nsp13105D105NGacAac11AY.4.20.000022
ORF1ab/nsp13105D105YGacTac11AY.4.40.000409
ORF1ab/nsp13105D105DgaCgaT11AY.420.00004
ORF1ab/nsp13105D105EgaCgaA11AY.420.00004
ORF1ab/nsp13105D105NGacAac11AY.430.000004
ORF1ab/nsp13105D105YGacTac11AY.430.000004
ORF1ab/nsp13105D105EgaCgaA11AY.430.000004
ORF1ab/nsp13105D105NGacAac11AY.440.000006
ORF1ab/nsp13105D105SGAcAGc11AY.440.000006
ORF1ab/nsp13105D105DgaCgaT11AY.440.000006
ORF1ab/nsp13105D105delGAC---11AY.460.000104
ORF1ab/nsp13105D105DgaCgaT11AY.460.000104
ORF1ab/nsp13105D105EgaCgaA11AY.470.000031
ORF1ab/nsp13105D105DgaCgaT11AY.540.000095
ORF1ab/nsp13105D105EgaCgaA11AY.610.000105
ORF1ab/nsp13105D105HGacCac11AY.620.000436
ORF1ab/nsp13105D105VgAcgTc11AY.690.000187
ORF1ab/nsp13105D105DgaCgaT11AY.710.000475
ORF1ab/nsp13105D105DgaCgaT11AY.90.000068
ORF1ab/nsp13105D105delGAC---11AY.90.000068
ORF1ab/nsp13105D105YGacTac11B0.000128
ORF1ab/nsp13105D105EgaCgaG11B.1.10.000018
ORF1ab/nsp13105D105XGaCTaG11B.1.10.000018
ORF1ab/nsp13105D105CGAcTGc11B.1.10.000018
ORF1ab/nsp13105D105WGACTGG11B.1.10.000018
ORF1ab/nsp13105D105delGAC---11B.1.1.1970.037037
ORF1ab/nsp13105D105EgaCgaA11B.1.1.2220.000204
ORF1ab/nsp13105D105DgaCgaT11B.1.1.2220.000204
ORF1ab/nsp13105D105delGAC---11B.1.1.2310.003096
ORF1ab/nsp13105D105DgaCgaT11B.1.1.280.000311
ORF1ab/nsp13105D105DgaCgaT11B.1.1.2840.000107
ORF1ab/nsp13105D105DgaCgaT11B.1.1.2910.000742
ORF1ab/nsp13105D105delGAC---11B.1.1.3060.000438
ORF1ab/nsp13105D105AgAcgCc11B.1.1.3170.000412
ORF1ab/nsp13105D105delGAC---11B.1.1.3180.000302
ORF1ab/nsp13105D105NGacAac11B.1.1.3800.009804
ORF1ab/nsp13105D105GgAcgGc11B.1.1.3970.002252
ORF1ab/nsp13105D105delGAC---11B.1.1.510.001718
ORF1ab/nsp13105D105delGAC---11B.1.1.5210.005348
ORF1ab/nsp13105D105YGacTac11B.1.1.610.008772
ORF1ab/nsp13105D105del1gaCga-11B.1.1.70.000001
ORF1ab/nsp13105D105VgAcgTc11B.1.1.70.000001
ORF1ab/nsp13105D105delGAC---11B.1.1.700.000341
ORF1ab/nsp13105D105delGAC---11B.1.1400.018868
ORF1ab/nsp13105D105NGacAac11B.1.1600.000031
ORF1ab/nsp13105D105del2GAC--N11B.1.1770.000013
ORF1ab/nsp13105D105NGacAac11B.1.177.160.000664
ORF1ab/nsp13105D105DgaCgaT11B.1.177.230.003236
ORF1ab/nsp13105D105delGAC---11B.1.177.730.000566
ORF1ab/nsp13105D105EgaCgaA11B.1.177.750.001041
ORF1ab/nsp13105D105delGAC---11B.1.177.830.001481
ORF1ab/nsp13105D105YGacTac11B.1.20.000009
ORF1ab/nsp13105D105delGAC---11B.1.20.000009
ORF1ab/nsp13105D105GgAcgGc11B.1.2340.000132
ORF1ab/nsp13105D105DgaCgaT11B.1.2400.000216
ORF1ab/nsp13105D105AgACgCA11B.1.2420.018868
ORF1ab/nsp13105D105delGAC---11B.1.2420.018868
ORF1ab/nsp13105D105YGacTac11B.1.2430.00007
ORF1ab/nsp13105D105DgaCgaT11B.1.2430.00007
ORF1ab/nsp13105D105NGacAac11B.1.243.10.022222
ORF1ab/nsp13105D105delGAC---11B.1.258.170.000104
ORF1ab/nsp13105D105DgaCgaT11B.1.2600.003344
ORF1ab/nsp13105D105EgaCgaA11B.1.2980.002114
ORF1ab/nsp13105D105AgAcgCc11B.1.3510.00003
ORF1ab/nsp13105D105EgaCgaA11B.1.3510.00003
ORF1ab/nsp13105D105delGAC---11B.1.351.20.000303
ORF1ab/nsp13105D105delGAC---11B.1.360.000146
ORF1ab/nsp13105D105DgaCgaT11B.1.36.170.000494
ORF1ab/nsp13105D105YGacTac11B.1.3750.00082
ORF1ab/nsp13105D105GgAcgGc11B.1.4160.001269
ORF1ab/nsp13105D105delGAC---11B.1.416.10.001563
ORF1ab/nsp13105D105AgAcgCc11B.1.438.10.000107
ORF1ab/nsp13105D105delGAC---11B.1.438.10.000107
ORF1ab/nsp13105D105GgAcgGc11B.1.4680.005714
ORF1ab/nsp13105D105DgaCgaT11B.1.5260.000024
ORF1ab/nsp13105D105DgaCgaT11B.1.5330.009615
ORF1ab/nsp13105D105YGacTac11B.1.5500.013699
ORF1ab/nsp13105D105YGacTac11B.1.5610.000397
ORF1ab/nsp13105D105AgAcgCc11B.1.5960.000087
ORF1ab/nsp13105D105delGAC---11B.1.617.10.000129
ORF1ab/nsp13105D105delGAC---11B.1.617.20.000004
ORF1ab/nsp13105D105NGacAac11B.1.617.20.000004
ORF1ab/nsp13105D105delGAC---11B.1.910.002075
ORF1ab/nsp13105D105YGacTac11B.1.910.002075
ORF1ab/nsp13105D105NGacAac11B.30.000831
ORF1ab/nsp13105D105NGacAac11B.350.007812
ORF1ab/nsp13105D105DgaCgaT11B.380.02381
ORF1ab/nsp13105D105GgAcgGc11B.400.000364
ORF1ab/nsp13105D105YGacTac11C.160.00106
ORF1ab/nsp13105D105YGacTac11C.390.018868
ORF1ab/nsp13105D105DgaCgaT11D.20.000075
ORF1ab/nsp13105D105GgAcgGc11D.20.000075
ORF1ab/nsp13105D105EgaCgaA11P.10.000016
ORF1ab/nsp13105D105delGAC---11P.1.10.000318
ORF1ab/nsp13105D105AgAcgCc11P.1.10.000318
ORF1ab/nsp13105D105NGacAac11P.1.120.000484
ORF1ab/nsp13105D105AgAcgCc11P.1.140.000048
ORF1ab/nsp13105D105DgaCgaT11P.30.001595
ORF1ab/nsp13105D105GgAcgGc11R.10.00009