CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 831 | Y831Y | Y5223Y | syn | taC | taT | 4251 | 4251 | 1 | 15931-15933 |
Details of the mutation Y831Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 4251 | 4251 | All | 0.000813 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1341 | 1341 | B.1.1.291 | 0.995546 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1030 | 1030 | AY.4 | 0.001603 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 521 | 521 | B.1.1.7 | 0.000466 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 140 | 140 | B.1.617.2 | 0.000527 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 124 | 124 | B.1.177.19 | 0.177396 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 88 | 88 | AY.103 | 0.000546 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 75 | 75 | B.1.429 | 0.001765 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 72 | 72 | AY.44 | 0.000438 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 54 | 54 | AY.25 | 0.000325 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 53 | 53 | AY.46 | 0.005516 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 50 | 50 | AY.43 | 0.000222 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 50 | 50 | B.1.36 | 0.007295 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 42 | 42 | B.1.2 | 0.00037 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 39 | 39 | B.1 | 0.000357 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 39 | 39 | B.1.1.519 | 0.001549 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 32 | 32 | B.1.438.1 | 0.003432 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 29 | 29 | AY.39.1.1 | 0.021014 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 28 | 28 | AY.100 | 0.001288 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 28 | 28 | P.1 | 0.000441 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 26 | 26 | B.1.595 | 0.006785 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 20 | 20 | AY.75 | 0.00112 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 16 | 16 | AY.24 | 0.006897 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 15 | 15 | AY.102 | 0.000398 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 14 | 14 | B.1.177 | 0.000184 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 13 | 13 | AY.111 | 0.002381 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 12 | 12 | B.1.427 | 0.000606 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 11 | 11 | AY.26 | 0.000311 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 11 | 11 | AY.39 | 0.000272 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 11 | 11 | AY.40 | 0.010608 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 10 | 10 | AY.20 | 0.000389 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 10 | 10 | AY.3 | 0.000099 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 9 | 9 | AY.2 | 0.003205 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 9 | 9 | B.1.396 | 0.006351 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 8 | 8 | B.1.160 | 0.00025 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 7 | 7 | AY.53 | 0.002013 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 7 | 7 | AY.6 | 0.000288 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 6 | 6 | AY.46.4 | 0.000987 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 6 | 6 | AY.5 | 0.000124 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 6 | 6 | B.1.577 | 0.004124 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 6 | 6 | B.1.637 | 0.000438 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 5 | 5 | AY.118 | 0.000313 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 5 | 5 | AY.120 | 0.000186 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 5 | 5 | B.1.1.83 | 0.01355 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 5 | 5 | B.1.525 | 0.000566 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 5 | 5 | P.1.17.1 | 0.004374 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 4 | 4 | AY.74 | 0.000463 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 4 | 4 | B.1.560 | 0.018519 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 4 | 4 | C.36.3 | 0.002269 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 3 | 3 | A.23 | 0.031579 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 3 | 3 | AY.17 | 0.02459 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 3 | 3 | B.1.1.311 | 0.001074 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 3 | 3 | B.1.497 | 0.000944 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 3 | 3 | B.1.618 | 0.012097 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 3 | 3 | B.1.620 | 0.002838 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 2 | 2 | B.1.210 | 0.004264 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 2 | 2 | P.3 | 0.00319 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | B.1.1.4 | 0.002976 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | B.1.160.29 | 0.004219 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | B.1.169 | 0.014925 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | B.1.570 | 0.002941 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp12 | 831 | Y831Y | taC | taT | 1 | 1 | P.1.7 | 0.000319 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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