CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 265 | Y265Y | Y4657Y | syn | taC | taT | 970 | 970 | 1 | 14233-14235 |
Details of the mutation Y265Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 970 | 970 | All | 0.000186 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 341 | 341 | AY.4 | 0.000531 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 183 | 183 | B.1.1.7 | 0.000164 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 56 | 56 | AY.44 | 0.000341 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 53 | 53 | B.1.1.214 | 0.002939 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 46 | 46 | AY.46.3 | 0.042951 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 32 | 32 | B.1.429 | 0.000753 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 21 | 21 | P.1 | 0.000331 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 18 | 18 | AY.47 | 0.00056 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 14 | 14 | B.1.1.410 | 0.518519 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 14 | 14 | B.1.2 | 0.000123 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 12 | 12 | AY.46 | 0.001249 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 10 | 10 | AY.103 | 0.000062 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 10 | 10 | AY.43 | 0.000044 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 9 | 9 | B.1.177.55 | 0.020979 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 8 | 8 | B.1.526 | 0.000188 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 7 | 7 | B.1.97 | 0.179487 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 6 | 6 | B.1.1.284 | 0.000644 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 5 | 5 | P.2 | 0.000933 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 4 | 4 | B.1.1.433 | 0.005698 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 3 | 3 | B.1.565 | 0.002431 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 3 | 3 | B.40 | 0.001093 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 2 | 2 | B.1.104 | 0.00738 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 2 | 2 | B.1.177.87 | 0.001456 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 2 | 2 | B.1.336 | 0.004878 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 2 | 2 | C.14 | 0.008658 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | B.1.348 | 0.018182 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | C.40 | 0.027778 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp12 | 265 | Y265Y | taC | taT | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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