CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = V848L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12848V848LV5240LnonsynGtaTta152415130.99278215982-15984
ORF1ab/nsp12848V848LV5240LnonsynGtaCta1524110.0072178515982-15984

Details of the mutation V848L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12848V848LGtaTta15131524All0.000289
ORF1ab/nsp12848V848LGtaCta111524All0.000002
ORF1ab/nsp12848V848LGtaTta167167AY.40.00026
ORF1ab/nsp12848V848LGtaTta133133B.1.6090.063758
ORF1ab/nsp12848V848LGtaTta120120B.1.617.20.000452
ORF1ab/nsp12848V848LGtaTta105106B.1.1.70.000094
ORF1ab/nsp12848V848LGtaCta1106B.1.1.70.000001
ORF1ab/nsp12848V848LGtaTta8181B.1.5960.007058
ORF1ab/nsp12848V848LGtaTta7579B.10.000687
ORF1ab/nsp12848V848LGtaCta479B.10.000037
ORF1ab/nsp12848V848LGtaTta7676AY.430.000337
ORF1ab/nsp12848V848LGtaTta5858B.1.6370.004238
ORF1ab/nsp12848V848LGtaTta5656B.1.5820.027478
ORF1ab/nsp12848V848LGtaTta5555AY.1030.000341
ORF1ab/nsp12848V848LGtaTta4949B.1.1770.000645
ORF1ab/nsp12848V848LGtaTta4343AY.440.000262
ORF1ab/nsp12848V848LGtaTta2525AY.250.00015
ORF1ab/nsp12848V848LGtaTta2323AY.1020.00061
ORF1ab/nsp12848V848LGtaTta1818AY.30.000179
ORF1ab/nsp12848V848LGtaTta1616B.1.20.000141
ORF1ab/nsp12848V848LGtaTta1515AY.290.000237
ORF1ab/nsp12848V848LGtaTta1414AY.1190.000494
ORF1ab/nsp12848V848LGtaTta1214B.1.10.000218
ORF1ab/nsp12848V848LGtaCta214B.1.10.000036
ORF1ab/nsp12848V848LGtaTta1112AY.390.000272
ORF1ab/nsp12848V848LGtaCta112AY.390.000025
ORF1ab/nsp12848V848LGtaTta1212B.1.3460.015727
ORF1ab/nsp12848V848LGtaTta1111AY.330.000735
ORF1ab/nsp12848V848LGtaTta1111P.10.000173
ORF1ab/nsp12848V848LGtaTta1010R.10.0009
ORF1ab/nsp12848V848LGtaTta99B.1.110.30.006466
ORF1ab/nsp12848V848LGtaTta99B.1.3880.818182
ORF1ab/nsp12848V848LGtaTta88AY.200.000311
ORF1ab/nsp12848V848LGtaTta88AY.39.10.000317
ORF1ab/nsp12848V848LGtaTta77B.1.1.3620.039326
ORF1ab/nsp12848V848LGtaTta77B.1.1.3690.003124
ORF1ab/nsp12848V848LGtaTta77B.1.2400.001509
ORF1ab/nsp12848V848LGtaTta66AY.320.003195
ORF1ab/nsp12848V848LGtaTta66AY.840.002625
ORF1ab/nsp12848V848LGtaTta66B.1.1600.000187
ORF1ab/nsp12848V848LGtaTta55AY.1090.003698
ORF1ab/nsp12848V848LGtaTta55AY.1180.000313
ORF1ab/nsp12848V848LGtaTta55AY.4.20.000108
ORF1ab/nsp12848V848LGtaTta45AY.470.000124
ORF1ab/nsp12848V848LGtaCta15AY.470.000031
ORF1ab/nsp12848V848LGtaTta55AY.930.001365
ORF1ab/nsp12848V848LGtaTta55B.1.1.3590.138889
ORF1ab/nsp12848V848LGtaTta55B.1.1.4310.080645
ORF1ab/nsp12848V848LGtaTta55B.1.4290.000118
ORF1ab/nsp12848V848LGtaTta55B.1.617.10.000645
ORF1ab/nsp12848V848LGtaTta44AY.140.000352
ORF1ab/nsp12848V848LGtaTta44AY.220.008368
ORF1ab/nsp12848V848LGtaTta44AY.230.000279
ORF1ab/nsp12848V848LGtaTta44AY.4.50.00043
ORF1ab/nsp12848V848LGtaTta44AY.490.01278
ORF1ab/nsp12848V848LGtaTta44B.1.1.3820.142857
ORF1ab/nsp12848V848LGtaTta44B.1.1.390.002039
ORF1ab/nsp12848V848LGtaTta44B.1.3510.000119
ORF1ab/nsp12848V848LGtaTta33AE.80.001467
ORF1ab/nsp12848V848LGtaTta33AY.1170.000254
ORF1ab/nsp12848V848LGtaTta33AY.1200.000112
ORF1ab/nsp12848V848LGtaTta33AY.20.001068
ORF1ab/nsp12848V848LGtaTta33AY.420.000121
ORF1ab/nsp12848V848LGtaTta33AY.450.000365
ORF1ab/nsp12848V848LGtaTta33AY.50.000062
ORF1ab/nsp12848V848LGtaTta33AY.520.002443
ORF1ab/nsp12848V848LGtaTta33AY.60.000123
ORF1ab/nsp12848V848LGtaTta33AY.610.000314
ORF1ab/nsp12848V848LGtaTta33AY.90.000203
ORF1ab/nsp12848V848LGtaTta33AY.98.10.000145
ORF1ab/nsp12848V848LGtaTta33AY.99.20.000276
ORF1ab/nsp12848V848LGtaTta33B.1.1.250.001706
ORF1ab/nsp12848V848LGtaTta33B.1.1.3180.000905
ORF1ab/nsp12848V848LGtaTta33B.1.1.5190.000119
ORF1ab/nsp12848V848LGtaTta33B.1.177.70.000495
ORF1ab/nsp12848V848LGtaTta33B.1.2450.09375
ORF1ab/nsp12848V848LGtaTta33B.1.2580.0002
ORF1ab/nsp12848V848LGtaTta33B.1.5260.000071
ORF1ab/nsp12848V848LGtaTta33B.1.6280.001057
ORF1ab/nsp12848V848LGtaTta33N.50.0053
ORF1ab/nsp12848V848LGtaTta33W.40.004054
ORF1ab/nsp12848V848LGtaTta22AY.1000.000092
ORF1ab/nsp12848V848LGtaCta12AY.1130.000142
ORF1ab/nsp12848V848LGtaTta12AY.1130.000142
ORF1ab/nsp12848V848LGtaTta22AY.29.10.000441
ORF1ab/nsp12848V848LGtaTta22AY.5.30.000675
ORF1ab/nsp12848V848LGtaTta22AY.710.00095
ORF1ab/nsp12848V848LGtaTta22AY.750.000112
ORF1ab/nsp12848V848LGtaTta22B0.000256
ORF1ab/nsp12848V848LGtaTta22B.1.1.2070.002364
ORF1ab/nsp12848V848LGtaTta22B.1.1.2140.000111
ORF1ab/nsp12848V848LGtaTta22B.1.1.3060.000877
ORF1ab/nsp12848V848LGtaTta22B.1.1.670.009132
ORF1ab/nsp12848V848LGtaTta22B.1.1900.02
ORF1ab/nsp12848V848LGtaTta22B.1.2340.000264
ORF1ab/nsp12848V848LGtaTta22B.1.360.000292
ORF1ab/nsp12848V848LGtaTta22B.1.3960.001411
ORF1ab/nsp12848V848LGtaTta22B.1.4270.000101
ORF1ab/nsp12848V848LGtaTta22B.1.5060.047619
ORF1ab/nsp12848V848LGtaTta22B.1.5950.000522
ORF1ab/nsp12848V848LGtaTta22B.400.000729
ORF1ab/nsp12848V848LGtaTta11A.10.000282
ORF1ab/nsp12848V848LGtaTta11A.2.50.000499
ORF1ab/nsp12848V848LGtaTta11A.270.001656
ORF1ab/nsp12848V848LGtaTta11AY.10.000396
ORF1ab/nsp12848V848LGtaTta11AY.1060.000335
ORF1ab/nsp12848V848LGtaTta11AY.1100.000113
ORF1ab/nsp12848V848LGtaTta11AY.1110.000183
ORF1ab/nsp12848V848LGtaTta11AY.120.000316
ORF1ab/nsp12848V848LGtaTta11AY.1210.000135
ORF1ab/nsp12848V848LGtaTta11AY.130.000161
ORF1ab/nsp12848V848LGtaTta11AY.16.10.00047
ORF1ab/nsp12848V848LGtaTta11AY.240.000431
ORF1ab/nsp12848V848LGtaTta11AY.280.00189
ORF1ab/nsp12848V848LGtaTta11AY.300.000396
ORF1ab/nsp12848V848LGtaTta11AY.340.000097
ORF1ab/nsp12848V848LGtaTta11AY.360.000148
ORF1ab/nsp12848V848LGtaTta11AY.460.000104
ORF1ab/nsp12848V848LGtaTta11AY.5.40.000277
ORF1ab/nsp12848V848LGtaTta11AY.510.000909
ORF1ab/nsp12848V848LGtaTta11AY.550.000917
ORF1ab/nsp12848V848LGtaTta11AY.680.000274
ORF1ab/nsp12848V848LGtaTta11AY.740.000116
ORF1ab/nsp12848V848LGtaTta11AY.770.001127
ORF1ab/nsp12848V848LGtaTta11AY.850.000427
ORF1ab/nsp12848V848LGtaTta11AY.9.10.000084
ORF1ab/nsp12848V848LGtaTta11AY.9.20.000037
ORF1ab/nsp12848V848LGtaTta11B.1.1.1630.007634
ORF1ab/nsp12848V848LGtaTta11B.1.1.1640.005155
ORF1ab/nsp12848V848LGtaTta11B.1.1.1700.001247
ORF1ab/nsp12848V848LGtaTta11B.1.1.2220.000204
ORF1ab/nsp12848V848LGtaTta11B.1.1.2370.005405
ORF1ab/nsp12848V848LGtaTta11B.1.1.2530.002506
ORF1ab/nsp12848V848LGtaTta11B.1.1.2680.014925
ORF1ab/nsp12848V848LGtaTta11B.1.1.2800.003086
ORF1ab/nsp12848V848LGtaTta11B.1.1.2940.001266
ORF1ab/nsp12848V848LGtaTta11B.1.1.3120.001912
ORF1ab/nsp12848V848LGtaTta11B.1.1.3890.006061
ORF1ab/nsp12848V848LGtaTta11B.1.1.3980.003226
ORF1ab/nsp12848V848LGtaTta11B.1.1.480.002874
ORF1ab/nsp12848V848LGtaTta11B.1.1.750.010638
ORF1ab/nsp12848V848LGtaTta11B.1.1.80.003584
ORF1ab/nsp12848V848LGtaTta11B.1.177.190.001431
ORF1ab/nsp12848V848LGtaTta11B.1.177.600.000218
ORF1ab/nsp12848V848LGtaTta11B.1.2210.000071
ORF1ab/nsp12848V848LGtaCta11B.1.2230.002778
ORF1ab/nsp12848V848LGtaTta11B.1.2410.000812
ORF1ab/nsp12848V848LGtaTta11B.1.2430.00007
ORF1ab/nsp12848V848LGtaTta11B.1.258.70.001912
ORF1ab/nsp12848V848LGtaTta11B.1.3110.000275
ORF1ab/nsp12848V848LGtaTta11B.1.3320.003497
ORF1ab/nsp12848V848LGtaTta11B.1.3490.000715
ORF1ab/nsp12848V848LGtaTta11B.1.36.160.001425
ORF1ab/nsp12848V848LGtaTta11B.1.36.170.000494
ORF1ab/nsp12848V848LGtaTta11B.1.36.290.000517
ORF1ab/nsp12848V848LGtaTta11B.1.4040.001302
ORF1ab/nsp12848V848LGtaTta11B.1.4360.001029
ORF1ab/nsp12848V848LGtaTta11B.1.4650.003802
ORF1ab/nsp12848V848LGtaTta11B.1.466.20.000391
ORF1ab/nsp12848V848LGtaTta11B.1.4970.000315
ORF1ab/nsp12848V848LGtaTta11B.1.5400.009709
ORF1ab/nsp12848V848LGtaTta11B.1.6120.002653
ORF1ab/nsp12848V848LGtaTta11C.180.002591
ORF1ab/nsp12848V848LGtaTta11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.