CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 720 | V720I | V5112I | nonsyn | Gtc | Atc | 25309 | 25307 | 0.999921 | 15598-15600 |
ORF1ab/nsp12 | 720 | V720I | V5112I | nonsyn | GtC | AtT | 25309 | 2 | 0.0000790233 | 15598-15600 |
Details of the mutation V720I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 25307 | 25309 | All | 0.00484 |
ORF1ab/nsp12 | 720 | V720I | GtC | AtT | 2 | 25309 | All | 0 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 10404 | 10404 | B.1.258 | 0.692354 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 9575 | 9575 | B.1.258.17 | 0.995529 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 2477 | 2477 | B.1.258.11 | 0.981768 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 523 | 523 | B.1.258.7 | 1 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 374 | 374 | B.1.258.22 | 0.997333 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 290 | 290 | B.1.258.4 | 1 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 268 | 268 | B.1 | 0.002455 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 200 | 200 | B.1.258.9 | 1 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 141 | 141 | B.1.258.19 | 1 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 129 | 129 | B.1.258.21 | 1 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 125 | 125 | B.1.258.12 | 0.984252 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 114 | 114 | B.1.258.5 | 1 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 87 | 87 | B.1.258.10 | 0.988636 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 63 | 63 | B.1.258.20 | 1 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 51 | 51 | B.1.258.6 | 1 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 48 | 48 | B.1.160 | 0.001497 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 42 | 42 | B.1.258.23 | 1 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 41 | 41 | AY.75 | 0.002297 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 35 | 35 | B.1.177 | 0.000461 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 31 | 31 | B.1.258.24 | 0.333333 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 28 | 28 | B.1.1 | 0.000508 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 27 | 27 | B.1.609 | 0.012943 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 22 | 22 | AY.4 | 0.000034 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 13 | 13 | B.1.258.14 | 0.012745 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 11 | 12 | B.1.1.7 | 0.00001 |
ORF1ab/nsp12 | 720 | V720I | GtC | AtT | 1 | 12 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 10 | 10 | AY.26 | 0.000283 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 10 | 10 | B.1.258.18 | 1 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 9 | 9 | AY.116.1 | 0.002803 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 8 | 8 | B.1.177.86 | 0.001468 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 8 | 8 | B.1.243 | 0.000557 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 7 | 7 | A | 0.002709 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 7 | 7 | B.1.221 | 0.000497 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 7 | 7 | B.4.1 | 0.132075 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 6 | 6 | B | 0.000767 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 6 | 6 | B.1.177.73 | 0.003398 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 6 | 6 | B.1.222 | 0.010152 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 6 | 6 | B.1.375 | 0.004918 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 5 | 5 | B.1.411 | 0.018519 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 5 | 5 | B.1.600 | 0.02924 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 4 | 4 | B.1.177.44 | 0.002076 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 4 | 4 | B.1.177.6 | 0.003906 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 3 | 3 | B.1.258.15 | 0.056604 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 2 | 2 | 0.111111 | |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 2 | 2 | AY.39.2 | 0.003082 |
ORF1ab/nsp12 | 720 | V720I | GtC | AtT | 1 | 2 | AY.42 | 0.00004 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 2 | AY.42 | 0.00004 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 2 | 2 | B.1.1.153 | 0.002191 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 2 | 2 | B.1.177.17 | 0.001642 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 2 | 2 | B.1.590 | 0.009091 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | B.1.258.16 | 0.001637 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | B.1.293 | 0.0125 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | B.1.337 | 0.005587 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | B.1.406 | 0.006061 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp12 | 720 | V720I | Gtc | Atc | 1 | 1 | W.4 | 0.001351 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|