CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 354 | V354L | V4746L | nonsyn | Gta | Tta | 2526 | 2515 | 0.995645 | 14500-14502 |
ORF1ab/nsp12 | 354 | V354L | V4746L | nonsyn | Gta | Cta | 2526 | 11 | 0.00435471 | 14500-14502 |
Details of the mutation V354L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 2515 | 2526 | All | 0.000481 |
ORF1ab/nsp12 | 354 | V354L | Gta | Cta | 11 | 2526 | All | 0.000002 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 775 | 775 | B.1.2 | 0.006824 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 344 | 346 | B.1.1.7 | 0.000308 |
ORF1ab/nsp12 | 354 | V354L | Gta | Cta | 2 | 346 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 168 | 168 | B.1.177 | 0.002212 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 125 | 126 | AY.4 | 0.000195 |
ORF1ab/nsp12 | 354 | V354L | Gta | Cta | 1 | 126 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 93 | 95 | AY.43 | 0.000412 |
ORF1ab/nsp12 | 354 | V354L | Gta | Cta | 2 | 95 | AY.43 | 0.000009 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 94 | 95 | B.1.617.2 | 0.000354 |
ORF1ab/nsp12 | 354 | V354L | Gta | Cta | 1 | 95 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 94 | 94 | B.1.160 | 0.002932 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 90 | 90 | AS.1 | 0.857143 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 75 | 75 | B.1 | 0.000687 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 38 | 39 | AY.103 | 0.000236 |
ORF1ab/nsp12 | 354 | V354L | Gta | Cta | 1 | 39 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 37 | 37 | AY.44 | 0.000225 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 35 | 35 | AY.3 | 0.000348 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 31 | 31 | AY.117 | 0.00262 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 20 | 22 | AY.25 | 0.00012 |
ORF1ab/nsp12 | 354 | V354L | Gta | Cta | 2 | 22 | AY.25 | 0.000012 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 19 | 19 | AY.9.2 | 0.000698 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 19 | 19 | B.1.258 | 0.001264 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 18 | 18 | AY.46.6 | 0.0013 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 15 | 15 | AY.4.2 | 0.000325 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 15 | 15 | B.1.1.519 | 0.000596 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 13 | 13 | AY.120 | 0.000483 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 11 | 11 | AY.110 | 0.00124 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 11 | 11 | AY.47 | 0.000342 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 10 | 10 | A | 0.00387 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 10 | 10 | AY.102 | 0.000265 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 10 | 10 | AY.26 | 0.000283 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 10 | 10 | AY.6 | 0.000411 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 10 | 10 | B.1.1.306 | 0.004384 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 10 | 10 | B.1.438.1 | 0.001073 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 9 | 9 | B.1.1 | 0.000163 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 8 | 8 | AY.20 | 0.000311 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 8 | 8 | AY.98 | 0.000632 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 8 | 8 | AY.98.1 | 0.000387 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 8 | 8 | B.1.400 | 0.003432 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 7 | 7 | AY.46 | 0.000729 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 7 | 7 | B.1.1.311 | 0.002507 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 7 | 7 | B.1.1.33 | 0.002946 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 7 | 7 | B.1.36 | 0.001021 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 6 | 6 | AY.33 | 0.000401 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 6 | 6 | B.1.221.3 | 0.005 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 5 | 5 | A.2 | 0.003309 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 5 | 5 | AY.113 | 0.000712 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 5 | 5 | B.1.1.228 | 0.015244 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 5 | 5 | B.1.525 | 0.000566 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 5 | 5 | B.1.546 | 0.018519 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 4 | 4 | B.1.1.153 | 0.004381 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 4 | 4 | B.1.36.16 | 0.005698 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 3 | 3 | AY.83 | 0.005172 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 3 | 3 | B.1.1.157 | 0.00274 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 3 | 3 | B.1.1.409 | 0.008499 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 3 | 3 | B.1.628 | 0.001057 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 3 | 3 | P.1.12 | 0.001452 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 2 | 2 | 0.111111 | |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 2 | 2 | AY.120.2 | 0.002571 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 2 | 2 | AY.5.1 | 0.007519 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 2 | 2 | AY.63 | 0.000774 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 2 | 2 | B | 0.000256 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 2 | 2 | B.1.1.368 | 0.006173 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 2 | 2 | B.1.143 | 0.042553 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 2 | 2 | B.1.235 | 0.005038 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 2 | 2 | B.1.462 | 0.014493 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 2 | 2 | P.6 | 0.006289 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | AM.4 | 0.003571 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.1.359 | 0.027778 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp12 | 354 | V354L | Gta | Cta | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.177.67 | 0.007634 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.177.72 | 0.00339 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.192 | 0.009259 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.233 | 0.014085 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.515 | 0.014493 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.549 | 0.007194 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 354 | V354L | Gta | Cta | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.56 | 0.028571 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp12 | 354 | V354L | Gta | Tta | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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