CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = V202V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12202V202VV4594VsyngtTgtC183890.48633914044-14046
ORF1ab/nsp12202V202VV4594VsyngtTgtA183720.39344314044-14046
ORF1ab/nsp12202V202VV4594VsyngtTgtG183220.12021914044-14046

Details of the mutation V202V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12202V202VgtTgtC89183All0.000017
ORF1ab/nsp12202V202VgtTgtA72183All0.000014
ORF1ab/nsp12202V202VgtTgtG22183All0.000004
ORF1ab/nsp12202V202VgtTgtC2527AY.40.000039
ORF1ab/nsp12202V202VgtTgtA227AY.40.000003
ORF1ab/nsp12202V202VgtTgtA1119B.1.1.70.00001
ORF1ab/nsp12202V202VgtTgtC819B.1.1.70.000007
ORF1ab/nsp12202V202VgtTgtA1717AY.340.001648
ORF1ab/nsp12202V202VgtTgtA1717B.1.4290.0004
ORF1ab/nsp12202V202VgtTgtG1212AY.30.000119
ORF1ab/nsp12202V202VgtTgtC88B.1.2580.000532
ORF1ab/nsp12202V202VgtTgtA66AY.870.004996
ORF1ab/nsp12202V202VgtTgtC45B.1.617.20.000015
ORF1ab/nsp12202V202VgtTgtG15B.1.617.20.000004
ORF1ab/nsp12202V202VgtTgtC44AY.140.000352
ORF1ab/nsp12202V202VgtTgtA24AY.50.000041
ORF1ab/nsp12202V202VgtTgtC14AY.50.000021
ORF1ab/nsp12202V202VgtTgtG14AY.50.000021
ORF1ab/nsp12202V202VgtTgtC34B.10.000027
ORF1ab/nsp12202V202VgtTgtA14B.10.000009
ORF1ab/nsp12202V202VgtTgtC24B.1.5260.000047
ORF1ab/nsp12202V202VgtTgtA24B.1.5260.000047
ORF1ab/nsp12202V202VgtTgtG33AY.200.000117
ORF1ab/nsp12202V202VgtTgtC33AY.46.40.000494
ORF1ab/nsp12202V202VgtTgtA33AY.610.000314
ORF1ab/nsp12202V202VgtTgtC33AY.750.000168
ORF1ab/nsp12202V202VgtTgtA23B.1.1600.000062
ORF1ab/nsp12202V202VgtTgtC13B.1.1600.000031
ORF1ab/nsp12202V202VgtTgtC23B.1.1770.000026
ORF1ab/nsp12202V202VgtTgtA13B.1.1770.000013
ORF1ab/nsp12202V202VgtTgtC23B.1.20.000018
ORF1ab/nsp12202V202VgtTgtG13B.1.20.000009
ORF1ab/nsp12202V202VgtTgtC22AY.300.000791
ORF1ab/nsp12202V202VgtTgtC22AY.390.000049
ORF1ab/nsp12202V202VgtTgtC22AY.4.20.000043
ORF1ab/nsp12202V202VgtTgtC22AY.420.00008
ORF1ab/nsp12202V202VgtTgtC22AY.430.000009
ORF1ab/nsp12202V202VgtTgtC22B.1.177.870.001456
ORF1ab/nsp12202V202VgtTgtA22B.1.36.290.001035
ORF1ab/nsp12202V202VgtTgtC11AY.1030.000006
ORF1ab/nsp12202V202VgtTgtC11AY.1060.000335
ORF1ab/nsp12202V202VgtTgtG11AY.1170.000085
ORF1ab/nsp12202V202VgtTgtC11AY.1180.000063
ORF1ab/nsp12202V202VgtTgtC11AY.1200.000037
ORF1ab/nsp12202V202VgtTgtC11AY.290.000016
ORF1ab/nsp12202V202VgtTgtA11AY.540.000095
ORF1ab/nsp12202V202VgtTgtC11AY.570.000656
ORF1ab/nsp12202V202VgtTgtG11AY.99.20.000092
ORF1ab/nsp12202V202VgtTgtA11B.1.10.000018
ORF1ab/nsp12202V202VgtTgtC11B.1.1.2140.000055
ORF1ab/nsp12202V202VgtTgtC11B.1.177.600.000218
ORF1ab/nsp12202V202VgtTgtG11B.1.360.000146
ORF1ab/nsp12202V202VgtTgtC11B.1.36.160.001425
ORF1ab/nsp12202V202VgtTgtA11B.1.36.170.000494
ORF1ab/nsp12202V202VgtTgtC11B.1.4780.011765
ORF1ab/nsp12202V202VgtTgtG11B.1.5750.000303
ORF1ab/nsp12202V202VgtTgtC11B.1.619.10.000641
ORF1ab/nsp12202V202VgtTgtA11B.1.6370.000073
ORF1ab/nsp12202V202VgtTgtA11D.20.000075
ORF1ab/nsp12202V202VgtTgtA11P.10.000016

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.