CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 908 | T908I | T5300I | nonsyn | aCt | aTt | 2160 | 2158 | 0.999074 | 16162-16164 |
ORF1ab/nsp12 | 908 | T908I | T5300I | nonsyn | aCT | aTC | 2160 | 2 | 0.000925926 | 16162-16164 |
Details of the mutation T908I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 2158 | 2160 | All | 0.000413 |
ORF1ab/nsp12 | 908 | T908I | aCT | aTC | 2 | 2160 | All | 0 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 518 | 518 | B.1.1.7 | 0.000464 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 141 | 141 | AY.4 | 0.000219 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 116 | 116 | AY.43 | 0.000514 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 98 | 98 | AY.118 | 0.00614 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 92 | 92 | B.1.617.2 | 0.000346 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 84 | 84 | B.1.1.402 | 0.933333 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 66 | 66 | AY.44 | 0.000402 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 51 | 51 | AY.120 | 0.001896 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 51 | 51 | B.1.1.177 | 0.980769 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 48 | 48 | AY.117 | 0.004057 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 48 | 48 | AY.65 | 0.025586 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 42 | 42 | B.1.596 | 0.00366 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 41 | 41 | B.1 | 0.000376 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 40 | 40 | B.1.177 | 0.000527 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 37 | 37 | B.1.561 | 0.014688 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 36 | 36 | B.1.2 | 0.000317 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 30 | 30 | AY.3 | 0.000298 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 27 | 27 | AY.25 | 0.000162 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 27 | 27 | B.1.1 | 0.00049 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 24 | 24 | AY.47 | 0.000747 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 23 | 23 | B.1.1.39 | 0.011723 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 23 | 23 | B.1.243 | 0.0016 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 22 | 22 | AY.103 | 0.000137 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 19 | 19 | AY.46.6 | 0.001372 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 17 | 17 | AY.111 | 0.003114 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 17 | 17 | AY.39 | 0.00042 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 16 | 16 | AY.9.2 | 0.000588 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 15 | 15 | AY.5 | 0.00031 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 14 | 14 | AY.34 | 0.001358 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 13 | 13 | B.1.1.519 | 0.000516 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 13 | 13 | B.1.234 | 0.001715 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 12 | 12 | B.1.526 | 0.000282 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 12 | 12 | B.1.576 | 0.010879 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 11 | 11 | AY.100 | 0.000506 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 11 | 11 | B.1.160.26 | 0.026634 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 10 | 10 | AY.98.1 | 0.000484 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 10 | 10 | B.1.1.398 | 0.032258 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 10 | 10 | B.1.177.81 | 0.001893 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 8 | 8 | AY.119 | 0.000282 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 8 | 8 | AY.20 | 0.000311 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 8 | 8 | AY.6 | 0.000329 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 7 | 7 | AY.116 | 0.002007 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 7 | 7 | AY.33 | 0.000467 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 6 | 6 | AY.102 | 0.000159 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 6 | 6 | AY.5.4 | 0.00166 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 6 | 6 | AY.9 | 0.000406 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 6 | 6 | B.1.1.153 | 0.006572 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 6 | 6 | B.1.279 | 0.003082 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 5 | 5 | B.1.1.37 | 0.000964 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 5 | 5 | B.1.36 | 0.00073 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 5 | 5 | B.1.564.1 | 0.007886 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 5 | 5 | P.1.12 | 0.00242 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 4 | 4 | AY.105 | 0.002572 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 4 | 4 | AY.32 | 0.00213 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 4 | 4 | B.1.397 | 0.019417 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 3 | 3 | A.21 | 0.00831 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 3 | 3 | B.1.1.294 | 0.003797 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 3 | 3 | B.1.195 | 0.015075 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 3 | 3 | B.1.36.18 | 0.001261 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 2 | 2 | A.2 | 0.001324 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 2 | 2 | AE.8 | 0.000978 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp12 | 908 | T908I | aCT | aTC | 2 | 2 | B.1.1.225 | 0.014388 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 2 | 2 | B.1.1.335 | 0.025974 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 2 | 2 | B.1.1.354 | 0.008772 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 2 | 2 | B.1.160.7 | 0.004158 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 2 | 2 | B.1.177.50 | 0.00939 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 2 | 2 | B.1.361 | 0.002577 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 2 | 2 | B.1.398 | 0.005952 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | AW.1 | 0.003049 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.1.136 | 0.021277 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.1.165 | 0.015385 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.143 | 0.021277 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.177.24 | 0.001295 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.363 | 0.012987 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.570 | 0.002941 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.27 | 0.015385 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp12 | 908 | T908I | aCt | aTt | 1 | 1 | C.1 | 0.002392 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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