CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = T896T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12896T896TT5288TsynacAacG3893580.92030816126-16128
ORF1ab/nsp12896T896TT5288TsynacAacT389280.071979416126-16128
ORF1ab/nsp12896T896TT5288TsynacAacC38930.0077120816126-16128

Details of the mutation T896T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12896T896TacAacG358389All0.000068
ORF1ab/nsp12896T896TacAacT28389All0.000005
ORF1ab/nsp12896T896TacAacC3389All0.000001
ORF1ab/nsp12896T896TacAacG9193B.1.1.70.000081
ORF1ab/nsp12896T896TacAacT293B.1.1.70.000002
ORF1ab/nsp12896T896TacAacG6868B.1.243.20.985507
ORF1ab/nsp12896T896TacAacG3939AY.40.000061
ORF1ab/nsp12896T896TacAacG1717B.10.000156
ORF1ab/nsp12896T896TacAacG1515AY.290.000237
ORF1ab/nsp12896T896TacAacT1313B.1.5960.001133
ORF1ab/nsp12896T896TacAacG1212B.1.617.20.000045
ORF1ab/nsp12896T896TacAacT59B.1.20.000044
ORF1ab/nsp12896T896TacAacG49B.1.20.000035
ORF1ab/nsp12896T896TacAacG77AY.430.000031
ORF1ab/nsp12896T896TacAacG77B.1.10.000127
ORF1ab/nsp12896T896TacAacG56AY.440.00003
ORF1ab/nsp12896T896TacAacT16AY.440.000006
ORF1ab/nsp12896T896TacAacG66B.1.1770.000079
ORF1ab/nsp12896T896TacAacG55AY.110.006693
ORF1ab/nsp12896T896TacAacG44AY.1020.000106
ORF1ab/nsp12896T896TacAacG34AY.1180.000188
ORF1ab/nsp12896T896TacAacT14AY.1180.000063
ORF1ab/nsp12896T896TacAacG44AY.470.000124
ORF1ab/nsp12896T896TacAacG44B.1.5260.000094
ORF1ab/nsp12896T896TacAacG33AY.1030.000019
ORF1ab/nsp12896T896TacAacG23AY.250.000012
ORF1ab/nsp12896T896TacAacT13AY.250.000006
ORF1ab/nsp12896T896TacAacC33AY.510.002727
ORF1ab/nsp12896T896TacAacG33B.1.1.4130.02069
ORF1ab/nsp12896T896TacAacG33B.1.3510.000089
ORF1ab/nsp12896T896TacAacG33C.370.000348
ORF1ab/nsp12896T896TacAacG22AY.1070.000932
ORF1ab/nsp12896T896TacAacG22AY.30.00002
ORF1ab/nsp12896T896TacAacG22AY.610.00021
ORF1ab/nsp12896T896TacAacG22B.1.177.180.00232
ORF1ab/nsp12896T896TacAacG22B.1.2210.000142
ORF1ab/nsp12896T896TacAacG22B.1.5170.000854
ORF1ab/nsp12896T896TacAacT110.055556
ORF1ab/nsp12896T896TacAacT11A.20.000662
ORF1ab/nsp12896T896TacAacG11AY.1000.000046
ORF1ab/nsp12896T896TacAacG11AY.1040.001984
ORF1ab/nsp12896T896TacAacG11AY.1060.000335
ORF1ab/nsp12896T896TacAacG11AY.1160.000287
ORF1ab/nsp12896T896TacAacG11AY.120.000316
ORF1ab/nsp12896T896TacAacG11AY.1210.000135
ORF1ab/nsp12896T896TacAacG11AY.200.000039
ORF1ab/nsp12896T896TacAacG11AY.260.000028
ORF1ab/nsp12896T896TacAacG11AY.270.000065
ORF1ab/nsp12896T896TacAacG11AY.390.000025
ORF1ab/nsp12896T896TacAacG11AY.39.10.00004
ORF1ab/nsp12896T896TacAacT11AY.4.50.000107
ORF1ab/nsp12896T896TacAacG11AY.450.000122
ORF1ab/nsp12896T896TacAacT11AY.46.20.000635
ORF1ab/nsp12896T896TacAacG11AY.46.60.000072
ORF1ab/nsp12896T896TacAacG11AY.50.000021
ORF1ab/nsp12896T896TacAacG11AY.580.000907
ORF1ab/nsp12896T896TacAacG11AY.650.000533
ORF1ab/nsp12896T896TacAacG11AY.750.000056
ORF1ab/nsp12896T896TacAacG11AY.850.000427
ORF1ab/nsp12896T896TacAacG11AY.90.000068
ORF1ab/nsp12896T896TacAacG11B.1.1.2140.000055
ORF1ab/nsp12896T896TacAacG11B.1.1.3010.001179
ORF1ab/nsp12896T896TacAacG11B.1.1.3770.001381
ORF1ab/nsp12896T896TacAacG11B.1.1.390.00051
ORF1ab/nsp12896T896TacAacG11B.1.1.700.000341
ORF1ab/nsp12896T896TacAacG11B.1.177.120.000152
ORF1ab/nsp12896T896TacAacG11B.1.177.60.000977
ORF1ab/nsp12896T896TacAacG11B.1.2430.00007
ORF1ab/nsp12896T896TacAacG11B.1.2580.000067
ORF1ab/nsp12896T896TacAacG11B.1.36.170.000494
ORF1ab/nsp12896T896TacAacT11B.1.3810.007812
ORF1ab/nsp12896T896TacAacG11B.1.4270.00005
ORF1ab/nsp12896T896TacAacG11B.1.4290.000024
ORF1ab/nsp12896T896TacAacG11B.1.617.10.000129
ORF1ab/nsp12896T896TacAacG11B.1.6370.000073
ORF1ab/nsp12896T896TacAacG11B.380.02381
ORF1ab/nsp12896T896TacAacG11C.260.007353
ORF1ab/nsp12896T896TacAacG11D.20.000075
ORF1ab/nsp12896T896TacAacG11P.10.000016
ORF1ab/nsp12896T896TacAacG11P.1.10.000318
ORF1ab/nsp12896T896TacAacG11P.1.130.000898
ORF1ab/nsp12896T896TacAacG11P.20.000187
ORF1ab/nsp12896T896TacAacG11Q.10.000126