CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = T803I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12803T803IT5195InonsynaCtaTt54685468115847-15849

Details of the mutation T803I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12803T803IaCtaTt54685468All0.001046
ORF1ab/nsp12803T803IaCtaTt10911091AY.40.001698
ORF1ab/nsp12803T803IaCtaTt10491049AY.250.00631
ORF1ab/nsp12803T803IaCtaTt699699B.1.1.4330.995726
ORF1ab/nsp12803T803IaCtaTt339339B.1.1.70.000303
ORF1ab/nsp12803T803IaCtaTt311311B.1.1.2530.779449
ORF1ab/nsp12803T803IaCtaTt172172AY.1030.001068
ORF1ab/nsp12803T803IaCtaTt166166B.1.617.20.000625
ORF1ab/nsp12803T803IaCtaTt120120AY.430.000532
ORF1ab/nsp12803T803IaCtaTt9797AY.360.014377
ORF1ab/nsp12803T803IaCtaTt9494B.1.1.2360.648276
ORF1ab/nsp12803T803IaCtaTt8383B.1.10.001506
ORF1ab/nsp12803T803IaCtaTt7676B.1.20.000669
ORF1ab/nsp12803T803IaCtaTt7070AY.29.10.015436
ORF1ab/nsp12803T803IaCtaTt6060AY.390.001483
ORF1ab/nsp12803T803IaCtaTt5959B.1.1770.000777
ORF1ab/nsp12803T803IaCtaTt5959B.1.4800.146766
ORF1ab/nsp12803T803IaCtaTt5050AY.99.20.004608
ORF1ab/nsp12803T803IaCtaTt4848AY.30.000477
ORF1ab/nsp12803T803IaCtaTt4848AY.440.000292
ORF1ab/nsp12803T803IaCtaTt4444AY.1020.001167
ORF1ab/nsp12803T803IaCtaTt4343B.10.000394
ORF1ab/nsp12803T803IaCtaTt3131AY.680.008486
ORF1ab/nsp12803T803IaCtaTt2626B.1.1.5190.001032
ORF1ab/nsp12803T803IaCtaTt2525B.1.5260.000588
ORF1ab/nsp12803T803IaCtaTt2424AY.290.000379
ORF1ab/nsp12803T803IaCtaTt2424AY.4.20.000521
ORF1ab/nsp12803T803IaCtaTt1919AY.260.000538
ORF1ab/nsp12803T803IaCtaTt1919B.1.4700.026685
ORF1ab/nsp12803T803IaCtaTt1818AY.200.0007
ORF1ab/nsp12803T803IaCtaTt1818B.1.2430.001253
ORF1ab/nsp12803T803IaCtaTt1717AY.9.10.001423
ORF1ab/nsp12803T803IaCtaTt1616AY.740.00185
ORF1ab/nsp12803T803IaCtaTt1212B.1.1.3170.00494
ORF1ab/nsp12803T803IaCtaTt1212P.20.00224
ORF1ab/nsp12803T803IaCtaTt1111AY.420.000443
ORF1ab/nsp12803T803IaCtaTt1111AY.470.000342
ORF1ab/nsp12803T803IaCtaTt1111B.1.1.3180.003319
ORF1ab/nsp12803T803IaCtaTt1010B.1.1.2220.00204
ORF1ab/nsp12803T803IaCtaTt99AY.1130.001282
ORF1ab/nsp12803T803IaCtaTt99AY.60.00037
ORF1ab/nsp12803T803IaCtaTt99B.1.1600.000281
ORF1ab/nsp12803T803IaCtaTt88AY.1000.000368
ORF1ab/nsp12803T803IaCtaTt88AY.330.000534
ORF1ab/nsp12803T803IaCtaTt88AY.570.005249
ORF1ab/nsp12803T803IaCtaTt88AY.650.004264
ORF1ab/nsp12803T803IaCtaTt88B.1.360.001167
ORF1ab/nsp12803T803IaCtaTt77AY.750.000392
ORF1ab/nsp12803T803IaCtaTt77B.1.2410.005682
ORF1ab/nsp12803T803IaCtaTt66A.2.5.30.061856
ORF1ab/nsp12803T803IaCtaTt66AY.1210.000812
ORF1ab/nsp12803T803IaCtaTt66AY.230.000418
ORF1ab/nsp12803T803IaCtaTt66AY.460.000624
ORF1ab/nsp12803T803IaCtaTt66AY.50.000124
ORF1ab/nsp12803T803IaCtaTt66AY.98.10.000291
ORF1ab/nsp12803T803IaCtaTt66B.1.1.330.002525
ORF1ab/nsp12803T803IaCtaTt66B.1.3510.000178
ORF1ab/nsp12803T803IaCtaTt66P.10.000095
ORF1ab/nsp12803T803IaCtaTt55A.280.013228
ORF1ab/nsp12803T803IaCtaTt55AY.10.001979
ORF1ab/nsp12803T803IaCtaTt55AY.1180.000313
ORF1ab/nsp12803T803IaCtaTt55AY.1190.000177
ORF1ab/nsp12803T803IaCtaTt55AY.320.002662
ORF1ab/nsp12803T803IaCtaTt55AY.940.002213
ORF1ab/nsp12803T803IaCtaTt55B.1.177.820.002387
ORF1ab/nsp12803T803IaCtaTt44AD.20.000876
ORF1ab/nsp12803T803IaCtaTt44AY.1200.000149
ORF1ab/nsp12803T803IaCtaTt44AY.4.40.001637
ORF1ab/nsp12803T803IaCtaTt44B0.000511
ORF1ab/nsp12803T803IaCtaTt44B.1.1.2140.000222
ORF1ab/nsp12803T803IaCtaTt44B.1.1.280.001245
ORF1ab/nsp12803T803IaCtaTt44B.1.177.90.005326
ORF1ab/nsp12803T803IaCtaTt44B.1.4270.000202
ORF1ab/nsp12803T803IaCtaTt44B.1.5960.000349
ORF1ab/nsp12803T803IaCtaTt44C.140.017316
ORF1ab/nsp12803T803IaCtaTt33AY.300.001187
ORF1ab/nsp12803T803IaCtaTt33AY.980.000237
ORF1ab/nsp12803T803IaCtaTt33B.1.1.1590.014019
ORF1ab/nsp12803T803IaCtaTt33B.1.258.170.000312
ORF1ab/nsp12803T803IaCtaTt33B.1.3110.000824
ORF1ab/nsp12803T803IaCtaTt33B.1.3620.004622
ORF1ab/nsp12803T803IaCtaTt33B.1.3960.002117
ORF1ab/nsp12803T803IaCtaTt33B.1.5170.001281
ORF1ab/nsp12803T803IaCtaTt33B.1.6210.000266
ORF1ab/nsp12803T803IaCtaTt33D.20.000225
ORF1ab/nsp12803T803IaCtaTt33R.10.00027
ORF1ab/nsp12803T803IaCtaTt22A.2.50.000998
ORF1ab/nsp12803T803IaCtaTt22AY.1090.001479
ORF1ab/nsp12803T803IaCtaTt22AY.1170.000169
ORF1ab/nsp12803T803IaCtaTt22AY.46.50.000397
ORF1ab/nsp12803T803IaCtaTt22AY.46.60.000144
ORF1ab/nsp12803T803IaCtaTt22AY.540.000191
ORF1ab/nsp12803T803IaCtaTt22AY.580.001815
ORF1ab/nsp12803T803IaCtaTt22AY.610.00021
ORF1ab/nsp12803T803IaCtaTt22AY.70.000392
ORF1ab/nsp12803T803IaCtaTt22AY.850.000854
ORF1ab/nsp12803T803IaCtaTt22AY.9.20.000073
ORF1ab/nsp12803T803IaCtaTt22B.1.1.1700.002494
ORF1ab/nsp12803T803IaCtaTt22B.1.1.2300.018349
ORF1ab/nsp12803T803IaCtaTt22B.1.1.250.001137
ORF1ab/nsp12803T803IaCtaTt22B.1.1.3060.000877
ORF1ab/nsp12803T803IaCtaTt22B.1.1.3550.030769
ORF1ab/nsp12803T803IaCtaTt22B.1.1.3740.004751
ORF1ab/nsp12803T803IaCtaTt22B.1.1.390.001019
ORF1ab/nsp12803T803IaCtaTt22B.1.1.4320.002532
ORF1ab/nsp12803T803IaCtaTt22B.1.1.5180.012658
ORF1ab/nsp12803T803IaCtaTt22B.1.1.5230.003125
ORF1ab/nsp12803T803IaCtaTt22B.1.1.700.000682
ORF1ab/nsp12803T803IaCtaTt22B.1.160.320.008584
ORF1ab/nsp12803T803IaCtaTt22B.1.177.600.000437
ORF1ab/nsp12803T803IaCtaTt22B.1.220.002635
ORF1ab/nsp12803T803IaCtaTt22B.1.4290.000047
ORF1ab/nsp12803T803IaCtaTt22B.1.4360.002058
ORF1ab/nsp12803T803IaCtaTt22B.1.466.20.000782
ORF1ab/nsp12803T803IaCtaTt22B.1.4690.00722
ORF1ab/nsp12803T803IaCtaTt22B.60.00182
ORF1ab/nsp12803T803IaCtaTt22C.360.001821
ORF1ab/nsp12803T803IaCtaTt22P.1.140.000096
ORF1ab/nsp12803T803IaCtaTt22P.1.150.000465
ORF1ab/nsp12803T803IaCtaTt22Q.30.00029
ORF1ab/nsp12803T803IaCtaTt22Q.80.00033
ORF1ab/nsp12803T803IaCtaTt11A.10.000282
ORF1ab/nsp12803T803IaCtaTt11A.270.001656
ORF1ab/nsp12803T803IaCtaTt11AA.80.022222
ORF1ab/nsp12803T803IaCtaTt11AE.80.000489
ORF1ab/nsp12803T803IaCtaTt11AU.10.001266
ORF1ab/nsp12803T803IaCtaTt11AY.100.00053
ORF1ab/nsp12803T803IaCtaTt11AY.1070.000466
ORF1ab/nsp12803T803IaCtaTt11AY.1080.001103
ORF1ab/nsp12803T803IaCtaTt11AY.116.10.000311
ORF1ab/nsp12803T803IaCtaTt11AY.120.000316
ORF1ab/nsp12803T803IaCtaTt11AY.120.2.10.000498
ORF1ab/nsp12803T803IaCtaTt11AY.130.000161
ORF1ab/nsp12803T803IaCtaTt11AY.140.000088
ORF1ab/nsp12803T803IaCtaTt11AY.16.10.00047
ORF1ab/nsp12803T803IaCtaTt11AY.23.10.000417
ORF1ab/nsp12803T803IaCtaTt11AY.270.000065
ORF1ab/nsp12803T803IaCtaTt11AY.3.10.000085
ORF1ab/nsp12803T803IaCtaTt11AY.340.000097
ORF1ab/nsp12803T803IaCtaTt11AY.39.10.00004
ORF1ab/nsp12803T803IaCtaTt11AY.4.2.10.000149
ORF1ab/nsp12803T803IaCtaTt11AY.4.50.000107
ORF1ab/nsp12803T803IaCtaTt11AY.5.30.000337
ORF1ab/nsp12803T803IaCtaTt11AY.5.40.000277
ORF1ab/nsp12803T803IaCtaTt11AY.510.000909
ORF1ab/nsp12803T803IaCtaTt11AY.550.000917
ORF1ab/nsp12803T803IaCtaTt11AY.730.000665
ORF1ab/nsp12803T803IaCtaTt11AY.75.10.00018
ORF1ab/nsp12803T803IaCtaTt11AY.840.000437
ORF1ab/nsp12803T803IaCtaTt11AY.880.000884
ORF1ab/nsp12803T803IaCtaTt11AY.920.000287
ORF1ab/nsp12803T803IaCtaTt11AY.990.001049
ORF1ab/nsp12803T803IaCtaTt11AZ.20.000821
ORF1ab/nsp12803T803IaCtaTt11B.1.1.1410.002012
ORF1ab/nsp12803T803IaCtaTt11B.1.1.1890.001513
ORF1ab/nsp12803T803IaCtaTt11B.1.1.2160.00089
ORF1ab/nsp12803T803IaCtaTt11B.1.1.2800.003086
ORF1ab/nsp12803T803IaCtaTt11B.1.1.2890.002083
ORF1ab/nsp12803T803IaCtaTt11B.1.1.3150.008475
ORF1ab/nsp12803T803IaCtaTt11B.1.1.370.000193
ORF1ab/nsp12803T803IaCtaTt11B.1.1.3720.000689
ORF1ab/nsp12803T803IaCtaTt11B.1.1.4280.009434
ORF1ab/nsp12803T803IaCtaTt11B.1.1.500.000679
ORF1ab/nsp12803T803IaCtaTt11B.1.1.630.000386
ORF1ab/nsp12803T803IaCtaTt11B.1.1.80.003584
ORF1ab/nsp12803T803IaCtaTt11B.1.160.160.000929
ORF1ab/nsp12803T803IaCtaTt11B.1.1690.014925
ORF1ab/nsp12803T803IaCtaTt11B.1.177.210.000076
ORF1ab/nsp12803T803IaCtaTt11B.1.177.570.000281
ORF1ab/nsp12803T803IaCtaTt11B.1.177.70.000165
ORF1ab/nsp12803T803IaCtaTt11B.1.1920.009259
ORF1ab/nsp12803T803IaCtaTt11B.1.2100.002132
ORF1ab/nsp12803T803IaCtaTt11B.1.214.20.0006
ORF1ab/nsp12803T803IaCtaTt11B.1.2220.001692
ORF1ab/nsp12803T803IaCtaTt11B.1.2390.001221
ORF1ab/nsp12803T803IaCtaTt11B.1.2580.000067
ORF1ab/nsp12803T803IaCtaTt11B.1.3690.000285
ORF1ab/nsp12803T803IaCtaTt11B.1.3910.001127
ORF1ab/nsp12803T803IaCtaTt11B.1.4990.00105
ORF1ab/nsp12803T803IaCtaTt11B.1.5210.004975
ORF1ab/nsp12803T803IaCtaTt11B.1.5430.01
ORF1ab/nsp12803T803IaCtaTt11B.1.5490.007194
ORF1ab/nsp12803T803IaCtaTt11B.1.575.10.002439
ORF1ab/nsp12803T803IaCtaTt11B.1.617.10.000129
ORF1ab/nsp12803T803IaCtaTt11B.1.6220.012987
ORF1ab/nsp12803T803IaCtaTt11B.1.6230.000536
ORF1ab/nsp12803T803IaCtaTt11B.1.6270.00202
ORF1ab/nsp12803T803IaCtaTt11B.1.6370.000073
ORF1ab/nsp12803T803IaCtaTt11B.390.002331
ORF1ab/nsp12803T803IaCtaTt11B.4.70.010101
ORF1ab/nsp12803T803IaCtaTt11C.370.000116
ORF1ab/nsp12803T803IaCtaTt11P.1.100.000269
ORF1ab/nsp12803T803IaCtaTt11P.1.70.000319
ORF1ab/nsp12803T803IaCtaTt11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.