CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = T801N

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12801T801NT5193NnonsynaCtaAt1561550.9935915841-15843
ORF1ab/nsp12801T801NT5193NnonsynaCTaAC15610.0064102615841-15843

Details of the mutation T801N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12801T801NaCtaAt155156All0.00003
ORF1ab/nsp12801T801NaCTaAC1156All0
ORF1ab/nsp12801T801NaCtaAt115115B.1.1180.771812
ORF1ab/nsp12801T801NaCtaAt55B.1.1.70.000004
ORF1ab/nsp12801T801NaCtaAt55B.1.5950.001305
ORF1ab/nsp12801T801NaCtaAt340.166667
ORF1ab/nsp12801T801NaCTaAC140.055556
ORF1ab/nsp12801T801NaCtaAt33B.1.617.20.000011
ORF1ab/nsp12801T801NaCtaAt22AY.250.000012
ORF1ab/nsp12801T801NaCtaAt22AY.440.000012
ORF1ab/nsp12801T801NaCtaAt22AY.610.00021
ORF1ab/nsp12801T801NaCtaAt22AY.9.10.000167
ORF1ab/nsp12801T801NaCtaAt11AY.1030.000006
ORF1ab/nsp12801T801NaCtaAt11AY.1180.000063
ORF1ab/nsp12801T801NaCtaAt11AY.16.10.00047
ORF1ab/nsp12801T801NaCtaAt11AY.30.00001
ORF1ab/nsp12801T801NaCtaAt11AY.470.000031
ORF1ab/nsp12801T801NaCtaAt11AY.540.000095
ORF1ab/nsp12801T801NaCtaAt11AY.9.20.000037
ORF1ab/nsp12801T801NaCtaAt11B.10.000009
ORF1ab/nsp12801T801NaCtaAt11B.1.160.160.000929
ORF1ab/nsp12801T801NaCtaAt11B.1.20.000009
ORF1ab/nsp12801T801NaCtaAt11B.1.2210.000071
ORF1ab/nsp12801T801NaCtaAt11B.1.3890.001002
ORF1ab/nsp12801T801NaCtaAt11B.1.4990.00105
ORF1ab/nsp12801T801NaCtaAt11B.1.5640.000426
ORF1ab/nsp12801T801NaCtaAt11C.370.000116
ORF1ab/nsp12801T801NaCtaAt11D.20.000075