CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = T739I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12739T739IT5131InonsynaCaaTa77967796115655-15657

Details of the mutation T739I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12739T739IaCaaTa77967796All0.001491
ORF1ab/nsp12739T739IaCaaTa11571157B.1.1.2140.064164
ORF1ab/nsp12739T739IaCaaTa11571157B.1.1.2980.997414
ORF1ab/nsp12739T739IaCaaTa11241124B.1.1.70.001006
ORF1ab/nsp12739T739IaCaaTa822822AY.40.001279
ORF1ab/nsp12739T739IaCaaTa392392AY.440.002386
ORF1ab/nsp12739T739IaCaaTa217217B.1.438.10.023276
ORF1ab/nsp12739T739IaCaaTa193193AY.1030.001198
ORF1ab/nsp12739T739IaCaaTa187187B.1.20.001647
ORF1ab/nsp12739T739IaCaaTa159159B.1.617.20.000599
ORF1ab/nsp12739T739IaCaaTa136136AY.1190.004802
ORF1ab/nsp12739T739IaCaaTa129129AY.430.000572
ORF1ab/nsp12739T739IaCaaTa125125B.10.001145
ORF1ab/nsp12739T739IaCaaTa114114AY.250.000686
ORF1ab/nsp12739T739IaCaaTa7171AY.1020.001882
ORF1ab/nsp12739T739IaCaaTa7070B.1.5640.029813
ORF1ab/nsp12739T739IaCaaTa6565AY.290.001025
ORF1ab/nsp12739T739IaCaaTa6565P.10.001024
ORF1ab/nsp12739T739IaCaaTa6060B.1.258.40.206897
ORF1ab/nsp12739T739IaCaaTa5858AY.99.20.005345
ORF1ab/nsp12739T739IaCaaTa5353B.1.1.4340.018473
ORF1ab/nsp12739T739IaCaaTa5353B.1.4270.002676
ORF1ab/nsp12739T739IaCaaTa5252B.1.1770.000685
ORF1ab/nsp12739T739IaCaaTa5050AY.390.001236
ORF1ab/nsp12739T739IaCaaTa4747B.1.4290.001106
ORF1ab/nsp12739T739IaCaaTa4444B.1.5260.001034
ORF1ab/nsp12739T739IaCaaTa4444Q.50.745763
ORF1ab/nsp12739T739IaCaaTa4343B.1.10.00078
ORF1ab/nsp12739T739IaCaaTa3939B.1.1.2220.007956
ORF1ab/nsp12739T739IaCaaTa3939B.1.1600.001216
ORF1ab/nsp12739T739IaCaaTa3636B.1.1.5190.00143
ORF1ab/nsp12739T739IaCaaTa3535B.1.160.140.074153
ORF1ab/nsp12739T739IaCaaTa3434B.1.5090.029437
ORF1ab/nsp12739T739IaCaaTa3333B.1.621.10.016692
ORF1ab/nsp12739T739IaCaaTa3030AY.30.000298
ORF1ab/nsp12739T739IaCaaTa2323AY.470.000715
ORF1ab/nsp12739T739IaCaaTa2222AY.50.000454
ORF1ab/nsp12739T739IaCaaTa2222AY.98.10.001065
ORF1ab/nsp12739T739IaCaaTa2222B.1.6370.001608
ORF1ab/nsp12739T739IaCaaTa2020B.1.3510.000595
ORF1ab/nsp12739T739IaCaaTa1919P.1.140.000908
ORF1ab/nsp12739T739IaCaaTa1818AY.200.0007
ORF1ab/nsp12739T739IaCaaTa1818Q.80.002968
ORF1ab/nsp12739T739IaCaaTa1717AY.420.000684
ORF1ab/nsp12739T739IaCaaTa1717L.30.060284
ORF1ab/nsp12739T739IaCaaTa1616AY.46.40.002632
ORF1ab/nsp12739T739IaCaaTa1616C.370.001857
ORF1ab/nsp12739T739IaCaaTa1515B.1.177.210.001147
ORF1ab/nsp12739T739IaCaaTa1515B.1.177.540.009096
ORF1ab/nsp12739T739IaCaaTa1414AY.39.10.000555
ORF1ab/nsp12739T739IaCaaTa1414B.1.2430.000974
ORF1ab/nsp12739T739IaCaaTa1414B.1.2580.000932
ORF1ab/nsp12739T739IaCaaTa1313B.1.2210.000923
ORF1ab/nsp12739T739IaCaaTa1111AY.1000.000506
ORF1ab/nsp12739T739IaCaaTa1111AY.340.001067
ORF1ab/nsp12739T739IaCaaTa1010AY.1200.000372
ORF1ab/nsp12739T739IaCaaTa1010AY.46.60.000722
ORF1ab/nsp12739T739IaCaaTa1010AY.9.20.000367
ORF1ab/nsp12739T739IaCaaTa1010B.1.1.250.005685
ORF1ab/nsp12739T739IaCaaTa1010B.1.36.170.004941
ORF1ab/nsp12739T739IaCaaTa1010B.1.5250.001132
ORF1ab/nsp12739T739IaCaaTa1010Q.10.001263
ORF1ab/nsp12739T739IaCaaTa99AY.260.000255
ORF1ab/nsp12739T739IaCaaTa99AY.330.000601
ORF1ab/nsp12739T739IaCaaTa99AY.950.006849
ORF1ab/nsp12739T739IaCaaTa99B.1.160.110.051429
ORF1ab/nsp12739T739IaCaaTa99B.1.360.001313
ORF1ab/nsp12739T739IaCaaTa99B.1.36.360.005418
ORF1ab/nsp12739T739IaCaaTa88AY.1210.001083
ORF1ab/nsp12739T739IaCaaTa88AY.4.20.000174
ORF1ab/nsp12739T739IaCaaTa88AY.750.000448
ORF1ab/nsp12739T739IaCaaTa88B.1.2100.017058
ORF1ab/nsp12739T739IaCaaTa88B.1.3670.006339
ORF1ab/nsp12739T739IaCaaTa88B.1.5610.003176
ORF1ab/nsp12739T739IaCaaTa77AY.1060.002344
ORF1ab/nsp12739T739IaCaaTa77AY.230.000488
ORF1ab/nsp12739T739IaCaaTa77AY.7.10.000789
ORF1ab/nsp12739T739IaCaaTa66AY.10.002374
ORF1ab/nsp12739T739IaCaaTa66B.1.2060.004894
ORF1ab/nsp12739T739IaCaaTa66B.1.2400.001293
ORF1ab/nsp12739T739IaCaaTa66B.1.617.10.000774
ORF1ab/nsp12739T739IaCaaTa66P.30.009569
ORF1ab/nsp12739T739IaCaaTa55A.300.714286
ORF1ab/nsp12739T739IaCaaTa55AY.1130.000712
ORF1ab/nsp12739T739IaCaaTa55AY.280.009452
ORF1ab/nsp12739T739IaCaaTa55AY.29.10.001103
ORF1ab/nsp12739T739IaCaaTa55AY.740.000578
ORF1ab/nsp12739T739IaCaaTa55P.1.150.001162
ORF1ab/nsp12739T739IaCaaTa55R.10.00045
ORF1ab/nsp12739T739IaCaaTa44AD.20.000876
ORF1ab/nsp12739T739IaCaaTa44AY.450.000487
ORF1ab/nsp12739T739IaCaaTa44AY.610.000419
ORF1ab/nsp12739T739IaCaaTa44AY.860.00332
ORF1ab/nsp12739T739IaCaaTa44B.1.1.280.001245
ORF1ab/nsp12739T739IaCaaTa44B.1.1.3020.008299
ORF1ab/nsp12739T739IaCaaTa44B.1.1.4320.005063
ORF1ab/nsp12739T739IaCaaTa44B.1.1.500.002716
ORF1ab/nsp12739T739IaCaaTa44B.1.177.120.000607
ORF1ab/nsp12739T739IaCaaTa44B.1.177.80.00301
ORF1ab/nsp12739T739IaCaaTa44B.1.466.20.001565
ORF1ab/nsp12739T739IaCaaTa44B.1.6210.000354
ORF1ab/nsp12739T739IaCaaTa44P.20.000747
ORF1ab/nsp12739T739IaCaaTa33AY.1100.000338
ORF1ab/nsp12739T739IaCaaTa33AY.1170.000254
ORF1ab/nsp12739T739IaCaaTa33AY.60.000123
ORF1ab/nsp12739T739IaCaaTa33AY.680.000821
ORF1ab/nsp12739T739IaCaaTa33B.1.1.1610.010601
ORF1ab/nsp12739T739IaCaaTa33B.1.1.2160.002671
ORF1ab/nsp12739T739IaCaaTa33B.1.1.2840.000322
ORF1ab/nsp12739T739IaCaaTa33B.1.1.3170.001235
ORF1ab/nsp12739T739IaCaaTa33B.1.1.4170.008108
ORF1ab/nsp12739T739IaCaaTa33B.1.1.4480.006098
ORF1ab/nsp12739T739IaCaaTa33B.1.1.5210.016043
ORF1ab/nsp12739T739IaCaaTa33B.1.1.700.001023
ORF1ab/nsp12739T739IaCaaTa33B.1.1.770.125
ORF1ab/nsp12739T739IaCaaTa33B.1.177.830.004444
ORF1ab/nsp12739T739IaCaaTa33B.1.2140.010989
ORF1ab/nsp12739T739IaCaaTa33B.1.2340.000396
ORF1ab/nsp12739T739IaCaaTa33B.1.2390.003663
ORF1ab/nsp12739T739IaCaaTa33B.1.258.170.000312
ORF1ab/nsp12739T739IaCaaTa33B.1.351.30.002629
ORF1ab/nsp12739T739IaCaaTa33B.1.5170.001281
ORF1ab/nsp12739T739IaCaaTa33P.1.10.000953
ORF1ab/nsp12739T739IaCaaTa33P.70.0131
ORF1ab/nsp12739T739IaCaaTa22A0.000774
ORF1ab/nsp12739T739IaCaaTa22AY.1040.003968
ORF1ab/nsp12739T739IaCaaTa22AY.1180.000125
ORF1ab/nsp12739T739IaCaaTa22AY.34.10.00102
ORF1ab/nsp12739T739IaCaaTa22AY.350.000466
ORF1ab/nsp12739T739IaCaaTa22AY.4.50.000215
ORF1ab/nsp12739T739IaCaaTa22AY.460.000208
ORF1ab/nsp12739T739IaCaaTa22AY.5.40.000553
ORF1ab/nsp12739T739IaCaaTa22AY.70.000392
ORF1ab/nsp12739T739IaCaaTa22AY.710.00095
ORF1ab/nsp12739T739IaCaaTa22AY.9.10.000167
ORF1ab/nsp12739T739IaCaaTa22AY.980.000158
ORF1ab/nsp12739T739IaCaaTa22B.1.1.1890.003026
ORF1ab/nsp12739T739IaCaaTa22B.1.1.2170.007273
ORF1ab/nsp12739T739IaCaaTa22B.1.1.2770.001517
ORF1ab/nsp12739T739IaCaaTa22B.1.1.3060.000877
ORF1ab/nsp12739T739IaCaaTa22B.1.1.3180.000604
ORF1ab/nsp12739T739IaCaaTa22B.1.1.330.000842
ORF1ab/nsp12739T739IaCaaTa22B.1.177.430.002954
ORF1ab/nsp12739T739IaCaaTa22B.1.177.810.000379
ORF1ab/nsp12739T739IaCaaTa22B.1.177.860.000367
ORF1ab/nsp12739T739IaCaaTa22B.1.3110.000549
ORF1ab/nsp12739T739IaCaaTa22B.1.4000.000858
ORF1ab/nsp12739T739IaCaaTa22B.1.4410.019231
ORF1ab/nsp12739T739IaCaaTa22B.1.4430.009346
ORF1ab/nsp12739T739IaCaaTa22B.1.5440.012048
ORF1ab/nsp12739T739IaCaaTa22B.1.5670.006667
ORF1ab/nsp12739T739IaCaaTa22B.1.5820.000981
ORF1ab/nsp12739T739IaCaaTa22B.1.5950.000522
ORF1ab/nsp12739T739IaCaaTa22B.1.5960.000174
ORF1ab/nsp12739T739IaCaaTa22B.1.6120.005305
ORF1ab/nsp12739T739IaCaaTa22B.270.030769
ORF1ab/nsp12739T739IaCaaTa22B.310.007463
ORF1ab/nsp12739T739IaCaaTa22B.6.60.001778
ORF1ab/nsp12739T739IaCaaTa22C.290.125
ORF1ab/nsp12739T739IaCaaTa22C.350.001548
ORF1ab/nsp12739T739IaCaaTa22D.20.00015
ORF1ab/nsp12739T739IaCaaTa22P.1.70.000639
ORF1ab/nsp12739T739IaCaaTa22Q.30.00029
ORF1ab/nsp12739T739IaCaaTa11A.2.50.000499
ORF1ab/nsp12739T739IaCaaTa11AT.10.005128
ORF1ab/nsp12739T739IaCaaTa11AY.1090.00074
ORF1ab/nsp12739T739IaCaaTa11AY.1150.005208
ORF1ab/nsp12739T739IaCaaTa11AY.120.10.000321
ORF1ab/nsp12739T739IaCaaTa11AY.120.2.10.000498
ORF1ab/nsp12739T739IaCaaTa11AY.130.000161
ORF1ab/nsp12739T739IaCaaTa11AY.140.000088
ORF1ab/nsp12739T739IaCaaTa11AY.23.10.000417
ORF1ab/nsp12739T739IaCaaTa11AY.240.000431
ORF1ab/nsp12739T739IaCaaTa11AY.270.000065
ORF1ab/nsp12739T739IaCaaTa11AY.3.10.000085
ORF1ab/nsp12739T739IaCaaTa11AY.300.000396
ORF1ab/nsp12739T739IaCaaTa11AY.360.000148
ORF1ab/nsp12739T739IaCaaTa11AY.46.10.001027
ORF1ab/nsp12739T739IaCaaTa11AY.46.50.000198
ORF1ab/nsp12739T739IaCaaTa11AY.5.20.002463
ORF1ab/nsp12739T739IaCaaTa11AY.5.30.000337
ORF1ab/nsp12739T739IaCaaTa11AY.520.000814
ORF1ab/nsp12739T739IaCaaTa11AY.550.000917
ORF1ab/nsp12739T739IaCaaTa11AY.690.000187
ORF1ab/nsp12739T739IaCaaTa11AY.700.000209
ORF1ab/nsp12739T739IaCaaTa11AY.840.000437
ORF1ab/nsp12739T739IaCaaTa11AY.880.000884
ORF1ab/nsp12739T739IaCaaTa11AY.90.000068
ORF1ab/nsp12739T739IaCaaTa11AY.990.001049
ORF1ab/nsp12739T739IaCaaTa11B0.000128
ORF1ab/nsp12739T739IaCaaTa11B.1.1.1760.000439
ORF1ab/nsp12739T739IaCaaTa11B.1.1.2090.008929
ORF1ab/nsp12739T739IaCaaTa11B.1.1.2650.003155
ORF1ab/nsp12739T739IaCaaTa11B.1.1.3040.002809
ORF1ab/nsp12739T739IaCaaTa11B.1.1.3510.002793
ORF1ab/nsp12739T739IaCaaTa11B.1.1.3620.005618
ORF1ab/nsp12739T739IaCaaTa11B.1.1.4310.016129
ORF1ab/nsp12739T739IaCaaTa11B.1.1.4670.019231
ORF1ab/nsp12739T739IaCaaTa11B.1.1.540.003021
ORF1ab/nsp12739T739IaCaaTa11B.1.160.300.002976
ORF1ab/nsp12739T739IaCaaTa11B.1.177.40.000211
ORF1ab/nsp12739T739IaCaaTa11B.1.177.580.001332
ORF1ab/nsp12739T739IaCaaTa11B.1.177.620.001192
ORF1ab/nsp12739T739IaCaaTa11B.1.177.670.007634
ORF1ab/nsp12739T739IaCaaTa11B.1.177.730.000566
ORF1ab/nsp12739T739IaCaaTa11B.1.177.820.000477
ORF1ab/nsp12739T739IaCaaTa11B.1.2320.000537
ORF1ab/nsp12739T739IaCaaTa11B.1.258.30.001675
ORF1ab/nsp12739T739IaCaaTa11B.1.351.20.000303
ORF1ab/nsp12739T739IaCaaTa11B.1.36.180.00042
ORF1ab/nsp12739T739IaCaaTa11B.1.36.240.006173
ORF1ab/nsp12739T739IaCaaTa11B.1.36.290.000517
ORF1ab/nsp12739T739IaCaaTa11B.1.3690.000285
ORF1ab/nsp12739T739IaCaaTa11B.1.3750.00082
ORF1ab/nsp12739T739IaCaaTa11B.1.3890.001002
ORF1ab/nsp12739T739IaCaaTa11B.1.3960.000706
ORF1ab/nsp12739T739IaCaaTa11B.1.4040.001302
ORF1ab/nsp12739T739IaCaaTa11B.1.4070.035714
ORF1ab/nsp12739T739IaCaaTa11B.1.4200.010417
ORF1ab/nsp12739T739IaCaaTa11B.1.4360.001029
ORF1ab/nsp12739T739IaCaaTa11B.1.4650.003802
ORF1ab/nsp12739T739IaCaaTa11B.1.4680.005714
ORF1ab/nsp12739T739IaCaaTa11B.1.5240.001406
ORF1ab/nsp12739T739IaCaaTa11B.1.5270.003704
ORF1ab/nsp12739T739IaCaaTa11B.1.5380.008065
ORF1ab/nsp12739T739IaCaaTa11B.1.5750.000303
ORF1ab/nsp12739T739IaCaaTa11B.1.5870.001898
ORF1ab/nsp12739T739IaCaaTa11B.1.6000.005848
ORF1ab/nsp12739T739IaCaaTa11B.1.6090.000479
ORF1ab/nsp12739T739IaCaaTa11B.1.6190.000871
ORF1ab/nsp12739T739IaCaaTa11B.1.840.020833
ORF1ab/nsp12739T739IaCaaTa11B.400.000364
ORF1ab/nsp12739T739IaCaaTa11C.20.016129
ORF1ab/nsp12739T739IaCaaTa11P.1.120.000484
ORF1ab/nsp12739T739IaCaaTa11P.1.80.004785