CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 701 | T701T | T5093T | syn | acG | acT | 7262 | 6438 | 0.886533 | 15541-15543 |
ORF1ab/nsp12 | 701 | T701T | T5093T | syn | acG | acA | 7262 | 812 | 0.111815 | 15541-15543 |
ORF1ab/nsp12 | 701 | T701T | T5093T | syn | acG | acC | 7262 | 12 | 0.00165244 | 15541-15543 |
Details of the mutation T701T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 6438 | 7262 | All | 0.001231 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 812 | 7262 | All | 0.000155 |
ORF1ab/nsp12 | 701 | T701T | acG | acC | 12 | 7262 | All | 0.000002 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1351 | 1512 | AY.4 | 0.002103 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 159 | 1512 | AY.4 | 0.000247 |
ORF1ab/nsp12 | 701 | T701T | acG | acC | 2 | 1512 | AY.4 | 0.000003 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 907 | 1121 | B.1.1.7 | 0.000812 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 214 | 1121 | B.1.1.7 | 0.000192 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 800 | 824 | AY.25 | 0.004812 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 24 | 824 | AY.25 | 0.000144 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 680 | 680 | B.1.177.81 | 0.128739 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 351 | 352 | R.1 | 0.031593 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 352 | R.1 | 0.00009 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 219 | 250 | B.1.617.2 | 0.000825 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 31 | 250 | B.1.617.2 | 0.000117 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 174 | 192 | AY.43 | 0.000771 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 18 | 192 | AY.43 | 0.00008 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 120 | 121 | AY.98.1 | 0.005812 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 121 | AY.98.1 | 0.000048 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 119 | 119 | AY.46.4 | 0.019576 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 81 | 100 | B.1 | 0.000742 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 18 | 100 | B.1 | 0.000165 |
ORF1ab/nsp12 | 701 | T701T | acG | acC | 1 | 100 | B.1 | 0.000009 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 52 | 99 | AY.44 | 0.000317 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 47 | 99 | AY.44 | 0.000286 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 95 | 95 | B.1.177.38 | 0.989583 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 87 | 91 | AY.29 | 0.001372 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 4 | 91 | AY.29 | 0.000063 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 80 | 90 | AY.3 | 0.000796 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 10 | 90 | AY.3 | 0.000099 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 83 | 89 | B.1.177 | 0.001093 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 6 | 89 | B.1.177 | 0.000079 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 87 | 87 | B.1.1.284 | 0.009344 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 39 | 72 | B.1.1 | 0.000707 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 33 | 72 | B.1.1 | 0.000599 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 64 | 64 | B.1.160 | 0.001996 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 57 | 63 | B.1.36 | 0.008316 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 6 | 63 | B.1.36 | 0.000875 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 60 | 62 | AY.102 | 0.001591 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 2 | 62 | AY.102 | 0.000053 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 60 | 62 | B.1.429 | 0.001412 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 2 | 62 | B.1.429 | 0.000047 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 40 | 55 | AY.103 | 0.000248 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 15 | 55 | AY.103 | 0.000093 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 51 | 54 | P.1 | 0.000803 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 3 | 54 | P.1 | 0.000047 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 43 | 49 | B.1.2 | 0.000379 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 6 | 49 | B.1.2 | 0.000053 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 47 | 47 | B.1.575 | 0.01426 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 28 | 39 | B.1.351 | 0.000832 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 11 | 39 | B.1.351 | 0.000327 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 25 | 30 | AY.39 | 0.000618 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 5 | 30 | AY.39 | 0.000124 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 28 | 28 | AY.5 | 0.000578 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 17 | 27 | AY.100 | 0.000782 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 10 | 27 | AY.100 | 0.00046 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 26 | 26 | B.1.582 | 0.012758 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 22 | 22 | AY.120 | 0.000818 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 22 | 22 | P.1.17 | 0.003559 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 11 | 19 | B.1.427 | 0.000555 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 8 | 19 | B.1.427 | 0.000404 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 17 | 17 | B.1.1.307 | 0.043038 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 16 | 17 | B.1.369 | 0.004564 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 17 | B.1.369 | 0.000285 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 17 | 17 | B.1.509 | 0.014719 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 12 | 16 | AY.42 | 0.000483 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 4 | 16 | AY.42 | 0.000161 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 16 | 16 | B.1.177.60 | 0.003495 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 11 | 12 | AY.47 | 0.000342 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 12 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 6 | 12 | AY.9.2 | 0.00022 |
ORF1ab/nsp12 | 701 | T701T | acG | acC | 5 | 12 | AY.9.2 | 0.000184 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 12 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 8 | 12 | B.1.36.22 | 0.009662 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 4 | 12 | B.1.36.22 | 0.004831 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 11 | 11 | AY.105 | 0.007074 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 8 | 11 | AY.118 | 0.000501 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 3 | 11 | AY.118 | 0.000188 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 10 | 11 | AY.23 | 0.000697 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 11 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 7 | 11 | AY.3.1 | 0.000597 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 4 | 11 | AY.3.1 | 0.000341 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 9 | 10 | AY.26 | 0.000255 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 10 | AY.26 | 0.000028 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 10 | 10 | AY.33 | 0.000668 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 10 | 10 | AY.45 | 0.001217 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 10 | 10 | C.37 | 0.001161 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 8 | 9 | AY.20 | 0.000311 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 9 | AY.20 | 0.000039 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 7 | 9 | B.1.1.519 | 0.000278 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 2 | 9 | B.1.1.519 | 0.000079 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 9 | 9 | B.1.466.2 | 0.003521 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 8 | 9 | B.1.526 | 0.000188 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 9 | B.1.526 | 0.000024 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 7 | 8 | AY.116 | 0.002007 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 8 | AY.116 | 0.000287 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 7 | 8 | AY.46.6 | 0.000505 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 8 | AY.46.6 | 0.000072 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 8 | 8 | AY.60 | 0.007505 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 7 | 8 | AY.61 | 0.000733 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 8 | AY.61 | 0.000105 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 6 | 8 | B.1.596 | 0.000523 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 2 | 8 | B.1.596 | 0.000174 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 6 | 7 | AY.4.1 | 0.004425 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 7 | AY.4.1 | 0.000737 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 5 | 7 | AY.4.5 | 0.000537 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 2 | 7 | AY.4.5 | 0.000215 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 7 | 7 | AY.46 | 0.000729 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 7 | 7 | B.1.1.306 | 0.003069 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 6 | 6 | AY.117 | 0.000507 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 5 | 6 | AY.4.2 | 0.000108 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 6 | AY.4.2 | 0.000022 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 6 | 6 | AY.5.3 | 0.002024 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 6 | 6 | B.1.1.28 | 0.001867 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 6 | 6 | B.1.1.33 | 0.002525 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 6 | 6 | B.1.1.70 | 0.002046 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 6 | 6 | B.1.221 | 0.000426 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 5 | 5 | AY.116.1 | 0.001557 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 3 | 5 | AY.119 | 0.000106 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 2 | 5 | AY.119 | 0.000071 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 4 | 5 | AY.27 | 0.000259 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 5 | AY.27 | 0.000065 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 5 | 5 | AY.4.4 | 0.002046 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 4 | 5 | B.1.177.4 | 0.000844 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 5 | B.1.177.4 | 0.000211 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 5 | 5 | B.1.177.50 | 0.023474 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 5 | 5 | B.1.243.2 | 0.072464 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 5 | 5 | B.1.258.17 | 0.00052 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 5 | 5 | B.1.267 | 0.092593 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 5 | 5 | B.1.623 | 0.002682 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 3 | 5 | P.1.15 | 0.000697 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 5 | P.1.15 | 0.000465 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 4 | 4 | AY.107 | 0.001864 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 3 | 4 | AY.121 | 0.000406 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 4 | AY.121 | 0.000135 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 4 | 4 | AY.37 | 0.001264 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 3 | 4 | AY.5.4 | 0.00083 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 4 | AY.5.4 | 0.000277 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 3 | 4 | AY.6 | 0.000123 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 4 | AY.6 | 0.000041 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 2 | 4 | AY.71 | 0.00095 |
ORF1ab/nsp12 | 701 | T701T | acG | acC | 1 | 4 | AY.71 | 0.000475 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 4 | AY.71 | 0.000475 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 3 | 4 | AY.98 | 0.000237 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 4 | AY.98 | 0.000079 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 4 | 4 | B.1.1.1 | 0.001307 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 3 | 4 | B.1.1.57 | 0.034483 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 4 | B.1.1.57 | 0.011494 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 4 | 4 | B.1.177.79 | 0.009368 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 4 | 4 | B.1.36.9 | 0.012862 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 4 | 4 | B.1.409 | 0.003125 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 4 | 4 | B.1.426 | 0.004036 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 4 | 4 | B.1.621.1 | 0.002023 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 4 | 4 | C.36 | 0.003643 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 3 | AY.68 | 0.000547 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 3 | AY.68 | 0.000274 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 3 | AY.75 | 0.000112 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 3 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 3 | 3 | B.1.1.333 | 0.003229 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 3 | B.1.1.409 | 0.005666 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 3 | B.1.1.409 | 0.002833 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 3 | 3 | B.1.1.428 | 0.028302 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 3 | 3 | B.1.1.432 | 0.003797 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 3 | 3 | B.1.177.83 | 0.004444 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 3 | B.1.240 | 0.000216 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 3 | B.1.240 | 0.000216 |
ORF1ab/nsp12 | 701 | T701T | acG | acC | 1 | 3 | B.1.240 | 0.000216 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 3 | 3 | B.1.396 | 0.002117 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 2 | 3 | B.1.525 | 0.000226 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 3 | B.1.525 | 0.000113 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 3 | 3 | P.1.12 | 0.001452 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 2 | A.24 | 0.142857 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 2 | A.28 | 0.005291 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 2 | AY.97 | 0.003401 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 2 | B.1.1.170 | 0.002494 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 2 | B.1.1.198 | 0.002937 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 2 | B.1.1.526 | 0.007092 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 2 | B.1.1.528 | 0.009615 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 2 | B.1.177.33 | 0.003289 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 2 | B.1.210 | 0.004264 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 2 | 2 | B.1.381 | 0.015625 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 2 | B.1.398 | 0.002976 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 2 | B.1.398 | 0.002976 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 2 | 2 | B.1.456 | 0.006536 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 2 | B.1.459 | 0.008163 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 2 | B.1.468 | 0.011429 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 2 | B.1.470 | 0.001404 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 2 | B.1.470 | 0.001404 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 2 | B.1.627 | 0.00202 |
ORF1ab/nsp12 | 701 | T701T | acG | acC | 1 | 2 | B.1.627 | 0.00202 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 2 | B.1.637 | 0.000073 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 2 | B.1.637 | 0.000073 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 2 | C.30 | 0.003454 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 2 | 2 | P.1.2 | 0.002312 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | A.2.5.3 | 0.010309 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 1 | B.1.1.219 | 0.005 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.1.282 | 0.011628 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.1.332 | 0.03125 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 1 | B.1.1.417 | 0.002703 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.1.513 | 0.012346 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.1.52 | 0.012195 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.118 | 0.006711 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.120 | 0.007692 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 1 | B.1.131 | 0.008772 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.160.15 | 0.00495 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.195 | 0.005025 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.198 | 0.071429 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.203 | 0.0625 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.214.1 | 0.02 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.366 | 0.004878 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.425 | 0.002994 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.465 | 0.003802 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.492 | 0.007042 |
ORF1ab/nsp12 | 701 | T701T | acG | acC | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.539 | 0.017544 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 1 | B.1.549 | 0.007194 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.1.635 | 0.017544 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.32 | 0.027027 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | C.28 | 0.04 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp12 | 701 | T701T | acG | acA | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp12 | 701 | T701T | acG | acT | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|