CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = T686T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12686T686TT5078TsynacAacG2662180.81954915496-15498
ORF1ab/nsp12686T686TT5078TsynacAacT266330.1240615496-15498
ORF1ab/nsp12686T686TT5078TsynacAacC266150.05639115496-15498

Details of the mutation T686T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12686T686TacAacG218266All0.000042
ORF1ab/nsp12686T686TacAacT33266All0.000006
ORF1ab/nsp12686T686TacAacC15266All0.000003
ORF1ab/nsp12686T686TacAacG113113B.1.6320.758389
ORF1ab/nsp12686T686TacAacG1418B.1.1.70.000013
ORF1ab/nsp12686T686TacAacC318B.1.1.70.000003
ORF1ab/nsp12686T686TacAacT118B.1.1.70.000001
ORF1ab/nsp12686T686TacAacT1313A0.005031
ORF1ab/nsp12686T686TacAacG1313B.1.3990.025145
ORF1ab/nsp12686T686TacAacG99AY.116.10.002803
ORF1ab/nsp12686T686TacAacG99B.1.4800.022388
ORF1ab/nsp12686T686TacAacG48B.10.000037
ORF1ab/nsp12686T686TacAacT38B.10.000027
ORF1ab/nsp12686T686TacAacC18B.10.000009
ORF1ab/nsp12686T686TacAacG88P.10.000126
ORF1ab/nsp12686T686TacAacG46AY.40.000006
ORF1ab/nsp12686T686TacAacT26AY.40.000003
ORF1ab/nsp12686T686TacAacG55AY.200.000194
ORF1ab/nsp12686T686TacAacG55AY.440.00003
ORF1ab/nsp12686T686TacAacG45B.1.1770.000053
ORF1ab/nsp12686T686TacAacC15B.1.1770.000013
ORF1ab/nsp12686T686TacAacC55P.1.170.000809
ORF1ab/nsp12686T686TacAacT44AY.1190.000141
ORF1ab/nsp12686T686TacAacG44AY.46.60.000289
ORF1ab/nsp12686T686TacAacG44B.1.20.000035
ORF1ab/nsp12686T686TacAacG44B.1.6090.001918
ORF1ab/nsp12686T686TacAacC230.111111
ORF1ab/nsp12686T686TacAacT130.055556
ORF1ab/nsp12686T686TacAacG33B.1.4680.017143
ORF1ab/nsp12686T686TacAacT33B.460.0625
ORF1ab/nsp12686T686TacAacG22B.1.177.600.000437
ORF1ab/nsp12686T686TacAacG22B.1.258.170.000208
ORF1ab/nsp12686T686TacAacT12B.1.617.20.000004
ORF1ab/nsp12686T686TacAacG12B.1.617.20.000004
ORF1ab/nsp12686T686TacAacG22B.1.6230.001073
ORF1ab/nsp12686T686TacAacC22P.30.00319
ORF1ab/nsp12686T686TacAacG11A.20.000662
ORF1ab/nsp12686T686TacAacT11A.23.10.000704
ORF1ab/nsp12686T686TacAacT11A.250.018182
ORF1ab/nsp12686T686TacAacG11AY.1170.000085
ORF1ab/nsp12686T686TacAacG11AY.160.00038
ORF1ab/nsp12686T686TacAacT11AY.260.000028
ORF1ab/nsp12686T686TacAacG11AY.3.10.000085
ORF1ab/nsp12686T686TacAacT11AY.390.000025
ORF1ab/nsp12686T686TacAacT11AY.610.000105
ORF1ab/nsp12686T686TacAacG11B.1.1.2220.000204
ORF1ab/nsp12686T686TacAacC11B.1.2210.000071
ORF1ab/nsp12686T686TacAacG11B.1.2580.000067
ORF1ab/nsp12686T686TacAacG11B.1.6210.000089
ORF1ab/nsp12686T686TacAacG11D.20.000075