CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = T680T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12680T680TT5072TsynacCacT820772480.88314915478-15480
ORF1ab/nsp12680T680TT5072TsynacCacA82079550.11636415478-15480
ORF1ab/nsp12680T680TT5072TsynacCacG820740.00048738915478-15480

Details of the mutation T680T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12680T680TacCacT72488207All0.001386
ORF1ab/nsp12680T680TacCacA9558207All0.000183
ORF1ab/nsp12680T680TacCacG48207All0.000001
ORF1ab/nsp12680T680TacCacT59575957B.1.177.70.982031
ORF1ab/nsp12680T680TacCacA570570AY.450.06936
ORF1ab/nsp12680T680TacCacT224253B.1.1.70.000201
ORF1ab/nsp12680T680TacCacA27253B.1.1.70.000024
ORF1ab/nsp12680T680TacCacG2253B.1.1.70.000002
ORF1ab/nsp12680T680TacCacT203208AY.440.001236
ORF1ab/nsp12680T680TacCacA5208AY.440.00003
ORF1ab/nsp12680T680TacCacT108108AY.1200.004015
ORF1ab/nsp12680T680TacCacT93100B.1.1770.001225
ORF1ab/nsp12680T680TacCacA7100B.1.1770.000092
ORF1ab/nsp12680T680TacCacT7892AY.30.000776
ORF1ab/nsp12680T680TacCacA1492AY.30.000139
ORF1ab/nsp12680T680TacCacT8383B.1.1.3170.03417
ORF1ab/nsp12680T680TacCacT5366B.1.617.20.0002
ORF1ab/nsp12680T680TacCacA1366B.1.617.20.000049
ORF1ab/nsp12680T680TacCacT4656AY.250.000277
ORF1ab/nsp12680T680TacCacA1056AY.250.00006
ORF1ab/nsp12680T680TacCacA5050AY.850.021358
ORF1ab/nsp12680T680TacCacA2448AY.40.000037
ORF1ab/nsp12680T680TacCacT2348AY.40.000036
ORF1ab/nsp12680T680TacCacG148AY.40.000002
ORF1ab/nsp12680T680TacCacT3746B.10.000339
ORF1ab/nsp12680T680TacCacA946B.10.000082
ORF1ab/nsp12680T680TacCacA3437AY.39.10.001347
ORF1ab/nsp12680T680TacCacT337AY.39.10.000119
ORF1ab/nsp12680T680TacCacT2736B.1.20.000238
ORF1ab/nsp12680T680TacCacA936B.1.20.000079
ORF1ab/nsp12680T680TacCacA3131B.1.5870.058824
ORF1ab/nsp12680T680TacCacT2829AY.1030.000174
ORF1ab/nsp12680T680TacCacA129AY.1030.000006
ORF1ab/nsp12680T680TacCacA2525AY.120.10.008026
ORF1ab/nsp12680T680TacCacT2424B.1.177.160.015947
ORF1ab/nsp12680T680TacCacT1623AY.430.000071
ORF1ab/nsp12680T680TacCacA723AY.430.000031
ORF1ab/nsp12680T680TacCacT2323B.1.2370.114428
ORF1ab/nsp12680T680TacCacA1919AY.1180.00119
ORF1ab/nsp12680T680TacCacT1116AY.1020.000292
ORF1ab/nsp12680T680TacCacA516AY.1020.000133
ORF1ab/nsp12680T680TacCacA1515AY.5.30.005061
ORF1ab/nsp12680T680TacCacT1414AY.3.10.001194
ORF1ab/nsp12680T680TacCacT1414B.1.36.90.045016
ORF1ab/nsp12680T680TacCacT1313B0.001662
ORF1ab/nsp12680T680TacCacA812AY.390.000198
ORF1ab/nsp12680T680TacCacT412AY.390.000099
ORF1ab/nsp12680T680TacCacT1111B.1.10.0002
ORF1ab/nsp12680T680TacCacA610AY.200.000233
ORF1ab/nsp12680T680TacCacT410AY.200.000155
ORF1ab/nsp12680T680TacCacT510AY.260.000142
ORF1ab/nsp12680T680TacCacA510AY.260.000142
ORF1ab/nsp12680T680TacCacT610AY.98.10.000291
ORF1ab/nsp12680T680TacCacA410AY.98.10.000194
ORF1ab/nsp12680T680TacCacT88AY.60.000329
ORF1ab/nsp12680T680TacCacT78P.10.00011
ORF1ab/nsp12680T680TacCacA18P.10.000016
ORF1ab/nsp12680T680TacCacT77AH.30.026616
ORF1ab/nsp12680T680TacCacT56A0.001935
ORF1ab/nsp12680T680TacCacA16A0.000387
ORF1ab/nsp12680T680TacCacT56AY.4.20.000108
ORF1ab/nsp12680T680TacCacA16AY.4.20.000022
ORF1ab/nsp12680T680TacCacT66B.1.1.5190.000238
ORF1ab/nsp12680T680TacCacT45AY.50.000083
ORF1ab/nsp12680T680TacCacA15AY.50.000021
ORF1ab/nsp12680T680TacCacT55B.1.1.4350.172414
ORF1ab/nsp12680T680TacCacA55C.370.00058
ORF1ab/nsp12680T680TacCacT44AY.1170.000338
ORF1ab/nsp12680T680TacCacT44AY.29.10.000882
ORF1ab/nsp12680T680TacCacT44AY.750.000224
ORF1ab/nsp12680T680TacCacA44B.1.1.330.001684
ORF1ab/nsp12680T680TacCacT44B.1.177.650.002661
ORF1ab/nsp12680T680TacCacT34B.1.4290.000071
ORF1ab/nsp12680T680TacCacA14B.1.4290.000024
ORF1ab/nsp12680T680TacCacT34B.1.5250.000339
ORF1ab/nsp12680T680TacCacA14B.1.5250.000113
ORF1ab/nsp12680T680TacCacA33AW.10.009146
ORF1ab/nsp12680T680TacCacT23AY.1130.000285
ORF1ab/nsp12680T680TacCacA13AY.1130.000142
ORF1ab/nsp12680T680TacCacA23AY.230.000139
ORF1ab/nsp12680T680TacCacT13AY.230.00007
ORF1ab/nsp12680T680TacCacA23AY.330.000134
ORF1ab/nsp12680T680TacCacT13AY.330.000067
ORF1ab/nsp12680T680TacCacA33AY.46.50.000595
ORF1ab/nsp12680T680TacCacT33B.1.1600.000094
ORF1ab/nsp12680T680TacCacT33B.1.177.150.001893
ORF1ab/nsp12680T680TacCacT33B.1.2580.0002
ORF1ab/nsp12680T680TacCacT33B.1.5610.001191
ORF1ab/nsp12680T680TacCacT33B.1.617.10.000387
ORF1ab/nsp12680T680TacCacT33B.290.010526
ORF1ab/nsp12680T680TacCacT22AY.1000.000092
ORF1ab/nsp12680T680TacCacT22AY.1140.000462
ORF1ab/nsp12680T680TacCacA22AY.270.000129
ORF1ab/nsp12680T680TacCacA22AY.420.00008
ORF1ab/nsp12680T680TacCacT22AY.46.40.000329
ORF1ab/nsp12680T680TacCacT22AY.740.000231
ORF1ab/nsp12680T680TacCacA12B.1.1.280.000311
ORF1ab/nsp12680T680TacCacT12B.1.1.280.000311
ORF1ab/nsp12680T680TacCacA22B.1.1.2940.002532
ORF1ab/nsp12680T680TacCacT22B.1.177.500.00939
ORF1ab/nsp12680T680TacCacT22B.1.177.630.005405
ORF1ab/nsp12680T680TacCacT22B.1.2430.000139
ORF1ab/nsp12680T680TacCacT22B.1.5260.000047
ORF1ab/nsp12680T680TacCacT22B.1.5950.000522
ORF1ab/nsp12680T680TacCacT22B.1.6020.013072
ORF1ab/nsp12680T680TacCacT22B.1.6210.000177
ORF1ab/nsp12680T680TacCacA110.055556
ORF1ab/nsp12680T680TacCacT11A.20.000662
ORF1ab/nsp12680T680TacCacA11A.23.10.000704
ORF1ab/nsp12680T680TacCacA11AD.20.000219
ORF1ab/nsp12680T680TacCacA11AY.1010.00049
ORF1ab/nsp12680T680TacCacT11AY.1210.000135
ORF1ab/nsp12680T680TacCacA11AY.4.30.000842
ORF1ab/nsp12680T680TacCacT11AY.4.50.000107
ORF1ab/nsp12680T680TacCacT11AY.410.000294
ORF1ab/nsp12680T680TacCacA11AY.460.000104
ORF1ab/nsp12680T680TacCacA11AY.46.60.000072
ORF1ab/nsp12680T680TacCacA11AY.520.000814
ORF1ab/nsp12680T680TacCacA11AY.620.000436
ORF1ab/nsp12680T680TacCacT11AY.810.001992
ORF1ab/nsp12680T680TacCacA11AY.9.10.000084
ORF1ab/nsp12680T680TacCacA11AY.9.20.000037
ORF1ab/nsp12680T680TacCacT11AY.91.10.004065
ORF1ab/nsp12680T680TacCacT11AY.980.000079
ORF1ab/nsp12680T680TacCacA11AY.99.20.000092
ORF1ab/nsp12680T680TacCacA11B.1.1.2070.001182
ORF1ab/nsp12680T680TacCacT11B.1.1.2570.009709
ORF1ab/nsp12680T680TacCacT11B.1.1.2710.055556
ORF1ab/nsp12680T680TacCacT11B.1.1.3060.000438
ORF1ab/nsp12680T680TacCacT11B.1.1.3110.000358
ORF1ab/nsp12680T680TacCacT11B.1.1.370.000193
ORF1ab/nsp12680T680TacCacT11B.1.1.630.000386
ORF1ab/nsp12680T680TacCacT11B.1.177.170.000821
ORF1ab/nsp12680T680TacCacT11B.1.177.60.000977
ORF1ab/nsp12680T680TacCacT11B.1.177.760.002494
ORF1ab/nsp12680T680TacCacT11B.1.2210.000071
ORF1ab/nsp12680T680TacCacT11B.1.2320.000537
ORF1ab/nsp12680T680TacCacA11B.1.2360.002053
ORF1ab/nsp12680T680TacCacT11B.1.2400.000216
ORF1ab/nsp12680T680TacCacA11B.1.3510.00003
ORF1ab/nsp12680T680TacCacA11B.1.36.350.002604
ORF1ab/nsp12680T680TacCacA11B.1.36.70.004
ORF1ab/nsp12680T680TacCacT11B.1.3620.001541
ORF1ab/nsp12680T680TacCacT11B.1.3710.001122
ORF1ab/nsp12680T680TacCacT11B.1.4200.010417
ORF1ab/nsp12680T680TacCacA11B.1.4270.00005
ORF1ab/nsp12680T680TacCacT11B.1.4730.019231
ORF1ab/nsp12680T680TacCacA11B.1.4990.00105
ORF1ab/nsp12680T680TacCacT11B.1.5480.035714
ORF1ab/nsp12680T680TacCacA11B.1.5820.000491
ORF1ab/nsp12680T680TacCacT11B.1.6090.000479
ORF1ab/nsp12680T680TacCacA11B.1.6230.000536
ORF1ab/nsp12680T680TacCacA11B.1.6250.002353
ORF1ab/nsp12680T680TacCacT11B.1.6280.000352
ORF1ab/nsp12680T680TacCacG11B.550.00295
ORF1ab/nsp12680T680TacCacA11N.10.016949
ORF1ab/nsp12680T680TacCacA11P.20.000187