CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = T556T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12556T556TT4948TsynacCacT186517070.91528115106-15108
ORF1ab/nsp12556T556TT4948TsynacCacA18651500.08042915106-15108
ORF1ab/nsp12556T556TT4948TsynacCacG186580.0042895415106-15108

Details of the mutation T556T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12556T556TacCacT17071865All0.000326
ORF1ab/nsp12556T556TacCacA1501865All0.000029
ORF1ab/nsp12556T556TacCacG81865All0.000002
ORF1ab/nsp12556T556TacCacT510519AY.40.000794
ORF1ab/nsp12556T556TacCacA9519AY.40.000014
ORF1ab/nsp12556T556TacCacT192198B.1.1.70.000172
ORF1ab/nsp12556T556TacCacA5198B.1.1.70.000004
ORF1ab/nsp12556T556TacCacG1198B.1.1.70.000001
ORF1ab/nsp12556T556TacCacT171171B.1.5030.425373
ORF1ab/nsp12556T556TacCacT110130B.1.4290.002588
ORF1ab/nsp12556T556TacCacA20130B.1.4290.000471
ORF1ab/nsp12556T556TacCacT108111AY.250.00065
ORF1ab/nsp12556T556TacCacA3111AY.250.000018
ORF1ab/nsp12556T556TacCacT9999B.1.1.2220.020196
ORF1ab/nsp12556T556TacCacT5959AY.260.00167
ORF1ab/nsp12556T556TacCacA5050B.1.1.3160.046253
ORF1ab/nsp12556T556TacCacT4247B.10.000385
ORF1ab/nsp12556T556TacCacA547B.10.000046
ORF1ab/nsp12556T556TacCacT2441AY.1030.000149
ORF1ab/nsp12556T556TacCacA1741AY.1030.000106
ORF1ab/nsp12556T556TacCacT4040AY.5.40.011068
ORF1ab/nsp12556T556TacCacT3939B.1.1.5190.001549
ORF1ab/nsp12556T556TacCacT3639B.1.617.20.000136
ORF1ab/nsp12556T556TacCacA339B.1.617.20.000011
ORF1ab/nsp12556T556TacCacT3131AY.430.000137
ORF1ab/nsp12556T556TacCacT2428AY.440.000146
ORF1ab/nsp12556T556TacCacA428AY.440.000024
ORF1ab/nsp12556T556TacCacT2222N.70.647059
ORF1ab/nsp12556T556TacCacA1018B.1.1770.000132
ORF1ab/nsp12556T556TacCacT818B.1.1770.000105
ORF1ab/nsp12556T556TacCacT1313AY.290.000205
ORF1ab/nsp12556T556TacCacT1313B.1.6310.043771
ORF1ab/nsp12556T556TacCacT912AY.390.000222
ORF1ab/nsp12556T556TacCacA312AY.390.000074
ORF1ab/nsp12556T556TacCacT1112P.10.000173
ORF1ab/nsp12556T556TacCacA112P.10.000016
ORF1ab/nsp12556T556TacCacT77AY.370.002212
ORF1ab/nsp12556T556TacCacT57B.1.10.000091
ORF1ab/nsp12556T556TacCacA27B.1.10.000036
ORF1ab/nsp12556T556TacCacT67B.1.1600.000187
ORF1ab/nsp12556T556TacCacA17B.1.1600.000031
ORF1ab/nsp12556T556TacCacG66AY.450.00073
ORF1ab/nsp12556T556TacCacT66B.1.1.330.002525
ORF1ab/nsp12556T556TacCacT66P.1.140.000287
ORF1ab/nsp12556T556TacCacT55B.1.20.000044
ORF1ab/nsp12556T556TacCacT44B.1.214.20.002398
ORF1ab/nsp12556T556TacCacT44B.1.360.000584
ORF1ab/nsp12556T556TacCacT44B.1.621.10.002023
ORF1ab/nsp12556T556TacCacT44B.1.6350.070175
ORF1ab/nsp12556T556TacCacT23AY.1200.000074
ORF1ab/nsp12556T556TacCacA13AY.1200.000037
ORF1ab/nsp12556T556TacCacT33AY.29.10.000662
ORF1ab/nsp12556T556TacCacT33AY.30.00003
ORF1ab/nsp12556T556TacCacT33AY.330.0002
ORF1ab/nsp12556T556TacCacT33AY.620.001307
ORF1ab/nsp12556T556TacCacT33B.1.4270.000151
ORF1ab/nsp12556T556TacCacT33B.1.5640.001278
ORF1ab/nsp12556T556TacCacT33P.1.10.000953
ORF1ab/nsp12556T556TacCacT12AY.1190.000035
ORF1ab/nsp12556T556TacCacA12AY.1190.000035
ORF1ab/nsp12556T556TacCacT12AY.200.000039
ORF1ab/nsp12556T556TacCacA12AY.200.000039
ORF1ab/nsp12556T556TacCacT22AY.230.000139
ORF1ab/nsp12556T556TacCacA22AY.340.000194
ORF1ab/nsp12556T556TacCacT12AY.420.00004
ORF1ab/nsp12556T556TacCacA12AY.420.00004
ORF1ab/nsp12556T556TacCacT22AY.46.60.000144
ORF1ab/nsp12556T556TacCacT22AY.90.000135
ORF1ab/nsp12556T556TacCacT22B.1.1.1580.02439
ORF1ab/nsp12556T556TacCacA12B.1.1.390.00051
ORF1ab/nsp12556T556TacCacT12B.1.1.390.00051
ORF1ab/nsp12556T556TacCacT22B.1.1.4340.000697
ORF1ab/nsp12556T556TacCacT22B.1.2340.000264
ORF1ab/nsp12556T556TacCacT22B.1.3510.000059
ORF1ab/nsp12556T556TacCacA22B.1.3690.00057
ORF1ab/nsp12556T556TacCacT22B.1.5260.000047
ORF1ab/nsp12556T556TacCacT22B.1.5460.007407
ORF1ab/nsp12556T556TacCacT22B.1.6210.000177
ORF1ab/nsp12556T556TacCacT22Q.20.001227
ORF1ab/nsp12556T556TacCacA110.055556
ORF1ab/nsp12556T556TacCacT11A0.000387
ORF1ab/nsp12556T556TacCacT11A.110.058824
ORF1ab/nsp12556T556TacCacT11AY.1020.000027
ORF1ab/nsp12556T556TacCacT11AY.1170.000085
ORF1ab/nsp12556T556TacCacT11AY.140.000088
ORF1ab/nsp12556T556TacCacT11AY.20.000356
ORF1ab/nsp12556T556TacCacT11AY.4.20.000022
ORF1ab/nsp12556T556TacCacT11AY.460.000104
ORF1ab/nsp12556T556TacCacT11AY.46.20.000635
ORF1ab/nsp12556T556TacCacT11AY.470.000031
ORF1ab/nsp12556T556TacCacA11AY.5.30.000337
ORF1ab/nsp12556T556TacCacT11AY.540.000095
ORF1ab/nsp12556T556TacCacT11AY.850.000427
ORF1ab/nsp12556T556TacCacT11AY.9.20.000037
ORF1ab/nsp12556T556TacCacT11AY.990.001049
ORF1ab/nsp12556T556TacCacT11AY.99.20.000092
ORF1ab/nsp12556T556TacCacT11AZ.40.003356
ORF1ab/nsp12556T556TacCacT11B.1.1.1290.009174
ORF1ab/nsp12556T556TacCacA11B.1.1.250.000569
ORF1ab/nsp12556T556TacCacT11B.1.1.280.000311
ORF1ab/nsp12556T556TacCacT11B.1.1.2980.000862
ORF1ab/nsp12556T556TacCacT11B.1.1.3060.000438
ORF1ab/nsp12556T556TacCacT11B.1.1.3850.004464
ORF1ab/nsp12556T556TacCacT11B.1.1.3970.002252
ORF1ab/nsp12556T556TacCacA11B.1.1.4160.000905
ORF1ab/nsp12556T556TacCacT11B.1.1.700.000341
ORF1ab/nsp12556T556TacCacT11B.1.177.230.003236
ORF1ab/nsp12556T556TacCacT11B.1.177.40.000211
ORF1ab/nsp12556T556TacCacT11B.1.177.530.002392
ORF1ab/nsp12556T556TacCacA11B.1.177.600.000218
ORF1ab/nsp12556T556TacCacT11B.1.2400.000216
ORF1ab/nsp12556T556TacCacT11B.1.2580.000067
ORF1ab/nsp12556T556TacCacT11B.1.258.210.007752
ORF1ab/nsp12556T556TacCacA11B.1.2600.003344
ORF1ab/nsp12556T556TacCacT11B.1.3110.000275
ORF1ab/nsp12556T556TacCacT11B.1.36.290.000517
ORF1ab/nsp12556T556TacCacT11B.1.36.380.001642
ORF1ab/nsp12556T556TacCacT11B.1.3670.000792
ORF1ab/nsp12556T556TacCacG11B.1.4160.001269
ORF1ab/nsp12556T556TacCacT11B.1.438.10.000107
ORF1ab/nsp12556T556TacCacT11B.1.466.20.000391
ORF1ab/nsp12556T556TacCacA11B.1.4680.005714
ORF1ab/nsp12556T556TacCacT11B.1.5210.004975
ORF1ab/nsp12556T556TacCacT11B.1.5970.00463
ORF1ab/nsp12556T556TacCacT11B.1.617.10.000129
ORF1ab/nsp12556T556TacCacT11B.30.000831
ORF1ab/nsp12556T556TacCacT11C.10.002392
ORF1ab/nsp12556T556TacCacT11C.360.000911
ORF1ab/nsp12556T556TacCacT11D.20.000075
ORF1ab/nsp12556T556TacCacA11P.1.120.000484
ORF1ab/nsp12556T556TacCacT11P.1.150.000232
ORF1ab/nsp12556T556TacCacT11P.1.80.004785
ORF1ab/nsp12556T556TacCacT11Q.80.000165
ORF1ab/nsp12556T556TacCacT11R.10.00009