CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 319 | T319I | T4711I | nonsyn | aCa | aTa | 2887 | 2887 | 1 | 14395-14397 |
Details of the mutation T319I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 2887 | 2887 | All | 0.000552 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 551 | 551 | B.1.1.7 | 0.000493 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 315 | 315 | B.1.617.2 | 0.001186 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 217 | 217 | AY.4 | 0.000338 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 182 | 182 | AY.34 | 0.017648 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 177 | 177 | AY.26 | 0.005011 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 177 | 177 | B.1.637 | 0.012934 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 96 | 96 | AY.44 | 0.000584 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 86 | 86 | AY.25 | 0.000517 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 72 | 72 | AY.103 | 0.000447 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 65 | 65 | AY.3 | 0.000647 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 61 | 61 | AY.43 | 0.00027 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 59 | 59 | AY.4.2 | 0.00128 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 57 | 57 | C.37 | 0.006616 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 51 | 51 | B.1.2 | 0.000449 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 44 | 44 | B.1 | 0.000403 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 32 | 32 | P.1 | 0.000504 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 30 | 30 | AY.23 | 0.002092 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 29 | 29 | B.1.1.40 | 1 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 20 | 20 | B.1.1.306 | 0.008768 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 19 | 19 | AY.75 | 0.001064 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 19 | 19 | B.1.596 | 0.001656 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 18 | 18 | B.1.429 | 0.000424 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 17 | 17 | B.1.1 | 0.000308 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 16 | 16 | B.1.177.86 | 0.002935 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 16 | 16 | B.1.575 | 0.004854 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 14 | 14 | B.1.526 | 0.000329 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 12 | 12 | AY.102 | 0.000318 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 12 | 12 | AY.27 | 0.000777 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 12 | 12 | AY.40 | 0.011572 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 12 | 12 | B.1.1.519 | 0.000477 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 12 | 12 | B.1.177 | 0.000158 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 12 | 12 | B.1.517 | 0.005124 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 11 | 11 | AY.29 | 0.000174 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 11 | 11 | AY.5 | 0.000227 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 11 | 11 | B.1.240 | 0.002371 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 10 | 10 | AY.119 | 0.000353 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 10 | 10 | B.1.251 | 0.217391 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 9 | 9 | AY.47 | 0.00028 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 9 | 9 | B.1.1.318 | 0.002716 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 9 | 9 | B.1.160 | 0.000281 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 9 | 9 | B.1.351 | 0.000268 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 9 | 9 | D.2 | 0.000675 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 8 | 8 | AY.85 | 0.003417 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 8 | 8 | B.1.1.33 | 0.003367 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 7 | 7 | AY.113 | 0.000997 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 6 | 6 | AY.75.1 | 0.001082 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 6 | 6 | B.1.177.73 | 0.003398 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 5 | 5 | AY.46.4 | 0.000823 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 5 | 5 | AY.98 | 0.000395 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 5 | 5 | P.1.13 | 0.004492 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 5 | 5 | P.1.15 | 0.001162 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 4 | 4 | AY.107 | 0.001864 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 4 | 4 | AY.64 | 0.002381 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 4 | 4 | B.1.1.263 | 0.006231 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 4 | 4 | P.1.10 | 0.001078 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 3 | 3 | A.23.1 | 0.002113 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 3 | 3 | AY.104 | 0.005952 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 3 | 3 | AY.67 | 0.001393 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 2 | 2 | 0.111111 | |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 2 | 2 | A | 0.000774 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 2 | 2 | AY.49 | 0.00639 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 2 | 2 | AY.56 | 0.00321 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 2 | 2 | B.1.1.52 | 0.02439 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 2 | 2 | B.1.36.22 | 0.002415 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 2 | 2 | B.1.538 | 0.016129 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 2 | 2 | B.1.589 | 0.015152 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 2 | 2 | U.2 | 0.017544 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.1.145 | 0.037037 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.1.224 | 0.014286 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.1.266 | 0.012195 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.1.344 | 0.010753 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.1.5 | 0.008333 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.160.28 | 0.002924 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.177.72 | 0.00339 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.385 | 0.010638 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.45 | 0.003831 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | B.52 | 0.010101 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | C.4 | 0.01 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp12 | 319 | T319I | aCa | aTa | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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