CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = T293A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12293T293AT4685AnonsynAcaGca1461450.99315114317-14319
ORF1ab/nsp12293T293AT4685AnonsynAcAGcC14610.0068493214317-14319

Details of the mutation T293A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12293T293AAcaGca145146All0.000028
ORF1ab/nsp12293T293AAcAGcC1146All0
ORF1ab/nsp12293T293AAcaGca8182B.1.617.20.000305
ORF1ab/nsp12293T293AAcAGcC182B.1.617.20.000004
ORF1ab/nsp12293T293AAcaGca1010AY.590.005297
ORF1ab/nsp12293T293AAcaGca99AY.250.000054
ORF1ab/nsp12293T293AAcaGca88B.1.1.70.000007
ORF1ab/nsp12293T293AAcaGca55B.1.20.000044
ORF1ab/nsp12293T293AAcaGca44AY.40.000006
ORF1ab/nsp12293T293AAcaGca33AY.390.000074
ORF1ab/nsp12293T293AAcaGca33B.1.6210.000266
ORF1ab/nsp12293T293AAcaGca22B.1.1.2300.018349
ORF1ab/nsp12293T293AAcaGca22B.1.1770.000026
ORF1ab/nsp12293T293AAcaGca22P.10.000032
ORF1ab/nsp12293T293AAcaGca11AY.1030.000006
ORF1ab/nsp12293T293AAcaGca11AY.1170.000085
ORF1ab/nsp12293T293AAcaGca11AY.16.10.00047
ORF1ab/nsp12293T293AAcaGca11AY.39.10.00004
ORF1ab/nsp12293T293AAcaGca11AY.400.000964
ORF1ab/nsp12293T293AAcaGca11AY.440.000006
ORF1ab/nsp12293T293AAcaGca11AY.550.000917
ORF1ab/nsp12293T293AAcaGca11AY.650.000533
ORF1ab/nsp12293T293AAcaGca11AY.680.000274
ORF1ab/nsp12293T293AAcaGca11AY.750.000056
ORF1ab/nsp12293T293AAcaGca11AY.90.000068
ORF1ab/nsp12293T293AAcaGca11AY.9.20.000037
ORF1ab/nsp12293T293AAcaGca11B.1.1.1760.000439
ORF1ab/nsp12293T293AAcaGca11B.1.177.440.000519
ORF1ab/nsp12293T293AAcaGca11B.1.2430.00007
ORF1ab/nsp12293T293AAcaGca11B.1.360.000146

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.