CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = T248I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12248T248IT4640InonsynaCcaTc395139460.99873414182-14184
ORF1ab/nsp12248T248IT4640InonsynaCCaTT395150.001265514182-14184

Details of the mutation T248I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12248T248IaCcaTc39463951All0.000755
ORF1ab/nsp12248T248IaCCaTT53951All0.000001
ORF1ab/nsp12248T248IaCcaTc15121514B.1.1.70.001354
ORF1ab/nsp12248T248IaCCaTT21514B.1.1.70.000002
ORF1ab/nsp12248T248IaCcaTc279279AY.40.000434
ORF1ab/nsp12248T248IaCcaTc248248B.1.20.002184
ORF1ab/nsp12248T248IaCcaTc122122P.10.001922
ORF1ab/nsp12248T248IaCcaTc120120B.1.617.20.000452
ORF1ab/nsp12248T248IaCcaTc100100A.23.10.070423
ORF1ab/nsp12248T248IaCcaTc8585AY.250.000511
ORF1ab/nsp12248T248IaCcaTc7979AY.430.00035
ORF1ab/nsp12248T248IaCcaTc6969AY.1030.000428
ORF1ab/nsp12248T248IaCcaTc5959B.10.00054
ORF1ab/nsp12248T248IaCcaTc5555B.1.5260.001293
ORF1ab/nsp12248T248IaCcaTc4848AY.1000.002208
ORF1ab/nsp12248T248IaCcaTc4747B.1.4290.001106
ORF1ab/nsp12248T248IaCcaTc4545AY.1020.001193
ORF1ab/nsp12248T248IaCcaTc4242AY.4.50.004515
ORF1ab/nsp12248T248IaCcaTc3535B.1.4970.011017
ORF1ab/nsp12248T248IaCcaTc3333B.1.1.4160.029864
ORF1ab/nsp12248T248IaCcaTc3030AY.98.10.001453
ORF1ab/nsp12248T248IaCcaTc2929AY.1200.001078
ORF1ab/nsp12248T248IaCcaTc2828AY.30.000278
ORF1ab/nsp12248T248IaCcaTc2525B.1.1.1760.010984
ORF1ab/nsp12248T248IaCcaTc2424N.50.042403
ORF1ab/nsp12248T248IaCcaTc2222AY.440.000134
ORF1ab/nsp12248T248IaCcaTc2222B.1.1770.00029
ORF1ab/nsp12248T248IaCcaTc2021B.1.10.000363
ORF1ab/nsp12248T248IaCCaTT121B.1.10.000018
ORF1ab/nsp12248T248IaCcaTc1818AY.260.00051
ORF1ab/nsp12248T248IaCcaTc1818AY.390.000445
ORF1ab/nsp12248T248IaCcaTc1818B.1.2340.002375
ORF1ab/nsp12248T248IaCcaTc1717AY.50.000351
ORF1ab/nsp12248T248IaCcaTc1717B.1.1.2530.042607
ORF1ab/nsp12248T248IaCcaTc1717B.1.177.580.022636
ORF1ab/nsp12248T248IaCcaTc1616B.1.4000.006864
ORF1ab/nsp12248T248IaCcaTc1616B.1.438.10.001716
ORF1ab/nsp12248T248IaCcaTc1616C.350.012384
ORF1ab/nsp12248T248IaCcaTc1616P.1.150.003717
ORF1ab/nsp12248T248IaCcaTc1515AY.190.017104
ORF1ab/nsp12248T248IaCcaTc1515AY.60.000617
ORF1ab/nsp12248T248IaCcaTc1515P.20.0028
ORF1ab/nsp12248T248IaCcaTc1414AY.930.003823
ORF1ab/nsp12248T248IaCcaTc1313AY.1190.000459
ORF1ab/nsp12248T248IaCcaTc1212AY.910.008766
ORF1ab/nsp12248T248IaCcaTc1212B.1.3090.571429
ORF1ab/nsp12248T248IaCcaTc1212B.1.5960.001046
ORF1ab/nsp12248T248IaCcaTc1212B.1.6370.000877
ORF1ab/nsp12248T248IaCcaTc1111B.1.1600.000343
ORF1ab/nsp12248T248IaCcaTc1111B.1.36.380.018062
ORF1ab/nsp12248T248IaCcaTc1010AY.200.000389
ORF1ab/nsp12248T248IaCcaTc1010AY.290.000158
ORF1ab/nsp12248T248IaCcaTc1010AY.4.20.000217
ORF1ab/nsp12248T248IaCcaTc1010B.1.1.5190.000397
ORF1ab/nsp12248T248IaCcaTc1010B.1.4590.040816
ORF1ab/nsp12248T248IaCcaTc99B.1.1.4200.009054
ORF1ab/nsp12248T248IaCcaTc99B.1.258.170.000936
ORF1ab/nsp12248T248IaCcaTc88B.1.5250.000905
ORF1ab/nsp12248T248IaCcaTc77AY.39.10.000277
ORF1ab/nsp12248T248IaCcaTc77AY.46.50.001389
ORF1ab/nsp12248T248IaCcaTc77AY.470.000218
ORF1ab/nsp12248T248IaCcaTc77AY.620.00305
ORF1ab/nsp12248T248IaCcaTc77AY.750.000392
ORF1ab/nsp12248T248IaCcaTc77B.1.1.3060.003069
ORF1ab/nsp12248T248IaCcaTc77B.1.177.810.001325
ORF1ab/nsp12248T248IaCcaTc77B.1.3510.000208
ORF1ab/nsp12248T248IaCcaTc77B.1.360.001021
ORF1ab/nsp12248T248IaCcaTc77Q.10.000884
ORF1ab/nsp12248T248IaCcaTc66AY.640.003571
ORF1ab/nsp12248T248IaCcaTc66AY.9.20.00022
ORF1ab/nsp12248T248IaCcaTc66B.1.2430.000418
ORF1ab/nsp12248T248IaCcaTc66B.1.2580.000399
ORF1ab/nsp12248T248IaCcaTc66D.20.00045
ORF1ab/nsp12248T248IaCcaTc55A.2.40.016835
ORF1ab/nsp12248T248IaCcaTc55AY.700.001043
ORF1ab/nsp12248T248IaCcaTc55B.1.1.390.002548
ORF1ab/nsp12248T248IaCcaTc55B.1.3190.015244
ORF1ab/nsp12248T248IaCcaTc35B.1.36.350.007812
ORF1ab/nsp12248T248IaCCaTT25B.1.36.350.005208
ORF1ab/nsp12248T248IaCcaTc55P.1.140.000239
ORF1ab/nsp12248T248IaCcaTc44AY.980.000316
ORF1ab/nsp12248T248IaCcaTc44B.1.1.2220.000816
ORF1ab/nsp12248T248IaCcaTc44B.1.36.80.004
ORF1ab/nsp12248T248IaCcaTc44B.1.3690.001141
ORF1ab/nsp12248T248IaCcaTc44B.1.5820.001963
ORF1ab/nsp12248T248IaCcaTc44B.400.001457
ORF1ab/nsp12248T248IaCcaTc44B.6.60.003556
ORF1ab/nsp12248T248IaCcaTc33AY.1180.000188
ORF1ab/nsp12248T248IaCcaTc33AY.120.20.003856
ORF1ab/nsp12248T248IaCcaTc33AY.230.000209
ORF1ab/nsp12248T248IaCcaTc33AY.270.000194
ORF1ab/nsp12248T248IaCcaTc33AY.320.001597
ORF1ab/nsp12248T248IaCcaTc33AY.420.000121
ORF1ab/nsp12248T248IaCcaTc33AY.460.000312
ORF1ab/nsp12248T248IaCcaTc33AY.690.00056
ORF1ab/nsp12248T248IaCcaTc33AY.730.001996
ORF1ab/nsp12248T248IaCcaTc33B0.000383
ORF1ab/nsp12248T248IaCcaTc33B.1.1.2140.000166
ORF1ab/nsp12248T248IaCcaTc33B.1.1.330.001263
ORF1ab/nsp12248T248IaCcaTc33B.1.1.4340.001046
ORF1ab/nsp12248T248IaCcaTc33B.1.177.440.001557
ORF1ab/nsp12248T248IaCcaTc33B.1.177.70.000495
ORF1ab/nsp12248T248IaCcaTc33B.1.177.80.002257
ORF1ab/nsp12248T248IaCcaTc33B.1.2650.003812
ORF1ab/nsp12248T248IaCcaTc33B.1.4270.000151
ORF1ab/nsp12248T248IaCcaTc33B.1.466.20.001174
ORF1ab/nsp12248T248IaCcaTc33B.1.5240.004219
ORF1ab/nsp12248T248IaCcaTc33B.1.5950.000783
ORF1ab/nsp12248T248IaCcaTc33B.1.617.10.000387
ORF1ab/nsp12248T248IaCcaTc33C.370.000348
ORF1ab/nsp12248T248IaCcaTc33P.1.160.001122
ORF1ab/nsp12248T248IaCcaTc22A.2.30.009479
ORF1ab/nsp12248T248IaCcaTc22AY.1170.000169
ORF1ab/nsp12248T248IaCcaTc22AY.120.000632
ORF1ab/nsp12248T248IaCcaTc22AY.1210.000271
ORF1ab/nsp12248T248IaCcaTc22AY.20.000712
ORF1ab/nsp12248T248IaCcaTc22AY.3.10.000171
ORF1ab/nsp12248T248IaCcaTc22AY.360.000296
ORF1ab/nsp12248T248IaCcaTc22AY.400.001929
ORF1ab/nsp12248T248IaCcaTc22AY.480.00093
ORF1ab/nsp12248T248IaCcaTc22AY.540.000191
ORF1ab/nsp12248T248IaCcaTc22AY.550.001835
ORF1ab/nsp12248T248IaCcaTc22AY.590.001059
ORF1ab/nsp12248T248IaCcaTc22AY.610.00021
ORF1ab/nsp12248T248IaCcaTc22AY.670.000929
ORF1ab/nsp12248T248IaCcaTc22AY.740.000231
ORF1ab/nsp12248T248IaCcaTc22AY.90.000135
ORF1ab/nsp12248T248IaCcaTc22B.1.1.2770.001517
ORF1ab/nsp12248T248IaCcaTc22B.1.1.430.029851
ORF1ab/nsp12248T248IaCcaTc22B.1.1.720.060606
ORF1ab/nsp12248T248IaCcaTc22B.1.177.560.001335
ORF1ab/nsp12248T248IaCcaTc22B.1.2060.001631
ORF1ab/nsp12248T248IaCcaTc22B.1.2210.000142
ORF1ab/nsp12248T248IaCcaTc22B.1.36.170.000988
ORF1ab/nsp12248T248IaCcaTc22B.1.4090.001563
ORF1ab/nsp12248T248IaCcaTc22B.1.5650.001621
ORF1ab/nsp12248T248IaCcaTc22B.1.5750.000607
ORF1ab/nsp12248T248IaCcaTc22B.1.5810.018868
ORF1ab/nsp12248T248IaCcaTc22B.1.6210.000177
ORF1ab/nsp12248T248IaCcaTc22B.1.6270.00404
ORF1ab/nsp12248T248IaCcaTc22C.36.30.001134
ORF1ab/nsp12248T248IaCcaTc22N.60.014184
ORF1ab/nsp12248T248IaCcaTc22Q.30.00029
ORF1ab/nsp12248T248IaCcaTc22Q.80.00033
ORF1ab/nsp12248T248IaCcaTc11A0.000387
ORF1ab/nsp12248T248IaCcaTc11AP.10.001502
ORF1ab/nsp12248T248IaCcaTc11AY.10.000396
ORF1ab/nsp12248T248IaCcaTc11AY.1010.00049
ORF1ab/nsp12248T248IaCcaTc11AY.1050.000643
ORF1ab/nsp12248T248IaCcaTc11AY.1060.000335
ORF1ab/nsp12248T248IaCcaTc11AY.1090.00074
ORF1ab/nsp12248T248IaCcaTc11AY.110.001339
ORF1ab/nsp12248T248IaCcaTc11AY.1130.000142
ORF1ab/nsp12248T248IaCcaTc11AY.1160.000287
ORF1ab/nsp12248T248IaCcaTc11AY.116.10.000311
ORF1ab/nsp12248T248IaCcaTc11AY.130.000161
ORF1ab/nsp12248T248IaCcaTc11AY.160.00038
ORF1ab/nsp12248T248IaCcaTc11AY.330.000067
ORF1ab/nsp12248T248IaCcaTc11AY.340.000097
ORF1ab/nsp12248T248IaCcaTc11AY.4.2.10.000149
ORF1ab/nsp12248T248IaCcaTc11AY.450.000122
ORF1ab/nsp12248T248IaCcaTc11AY.46.10.001027
ORF1ab/nsp12248T248IaCcaTc11AY.46.40.000165
ORF1ab/nsp12248T248IaCcaTc11AY.5.40.000277
ORF1ab/nsp12248T248IaCcaTc11AY.570.000656
ORF1ab/nsp12248T248IaCcaTc11AY.630.000387
ORF1ab/nsp12248T248IaCcaTc11AY.650.000533
ORF1ab/nsp12248T248IaCcaTc11AY.840.000437
ORF1ab/nsp12248T248IaCcaTc11AY.870.000833
ORF1ab/nsp12248T248IaCcaTc11AY.990.001049
ORF1ab/nsp12248T248IaCcaTc11AY.99.20.000092
ORF1ab/nsp12248T248IaCcaTc11B.1.1.1570.000913
ORF1ab/nsp12248T248IaCcaTc11B.1.1.1650.015385
ORF1ab/nsp12248T248IaCcaTc11B.1.1.2000.007463
ORF1ab/nsp12248T248IaCcaTc11B.1.1.2250.007194
ORF1ab/nsp12248T248IaCcaTc11B.1.1.2300.009174
ORF1ab/nsp12248T248IaCcaTc11B.1.1.250.000569
ORF1ab/nsp12248T248IaCcaTc11B.1.1.2540.011236
ORF1ab/nsp12248T248IaCcaTc11B.1.1.2610.008621
ORF1ab/nsp12248T248IaCcaTc11B.1.1.280.000311
ORF1ab/nsp12248T248IaCcaTc11B.1.1.2840.000107
ORF1ab/nsp12248T248IaCcaTc11B.1.1.3050.003861
ORF1ab/nsp12248T248IaCcaTc11B.1.1.3110.000358
ORF1ab/nsp12248T248IaCcaTc11B.1.1.3180.000302
ORF1ab/nsp12248T248IaCcaTc11B.1.1.3540.004386
ORF1ab/nsp12248T248IaCcaTc11B.1.1.3980.003226
ORF1ab/nsp12248T248IaCcaTc11B.1.1.4090.002833
ORF1ab/nsp12248T248IaCcaTc11B.1.1.5240.020833
ORF1ab/nsp12248T248IaCcaTc11B.1.110.30.000718
ORF1ab/nsp12248T248IaCcaTc11B.1.1390.000733
ORF1ab/nsp12248T248IaCcaTc11B.1.1420.002899
ORF1ab/nsp12248T248IaCcaTc11B.1.177.500.004695
ORF1ab/nsp12248T248IaCcaTc11B.1.177.540.000606
ORF1ab/nsp12248T248IaCcaTc11B.1.177.60.000977
ORF1ab/nsp12248T248IaCcaTc11B.1.177.650.000665
ORF1ab/nsp12248T248IaCcaTc11B.1.177.730.000566
ORF1ab/nsp12248T248IaCcaTc11B.1.177.860.000183
ORF1ab/nsp12248T248IaCcaTc11B.1.1950.005025
ORF1ab/nsp12248T248IaCcaTc11B.1.2130.014925
ORF1ab/nsp12248T248IaCcaTc11B.1.214.20.0006
ORF1ab/nsp12248T248IaCcaTc11B.1.2180.005155
ORF1ab/nsp12248T248IaCcaTc11B.1.220.001318
ORF1ab/nsp12248T248IaCcaTc11B.1.2400.000216
ORF1ab/nsp12248T248IaCcaTc11B.1.258.110.000396
ORF1ab/nsp12248T248IaCcaTc11B.1.258.160.001637
ORF1ab/nsp12248T248IaCcaTc11B.1.258.20.004505
ORF1ab/nsp12248T248IaCcaTc11B.1.3050.002151
ORF1ab/nsp12248T248IaCcaTc11B.1.3200.001245
ORF1ab/nsp12248T248IaCcaTc11B.1.36.180.00042
ORF1ab/nsp12248T248IaCcaTc11B.1.36.240.006173
ORF1ab/nsp12248T248IaCcaTc11B.1.36.290.000517
ORF1ab/nsp12248T248IaCcaTc11B.1.36.360.000602
ORF1ab/nsp12248T248IaCcaTc11B.1.3700.008
ORF1ab/nsp12248T248IaCcaTc11B.1.3970.004854
ORF1ab/nsp12248T248IaCcaTc11B.1.4250.002994
ORF1ab/nsp12248T248IaCcaTc11B.1.4360.001029
ORF1ab/nsp12248T248IaCcaTc11B.1.5560.007519
ORF1ab/nsp12248T248IaCcaTc11B.1.5760.000907
ORF1ab/nsp12248T248IaCcaTc11B.1.5850.027778
ORF1ab/nsp12248T248IaCcaTc11B.1.6090.000479
ORF1ab/nsp12248T248IaCcaTc11B.1.6120.002653
ORF1ab/nsp12248T248IaCcaTc11B.1.6190.000871
ORF1ab/nsp12248T248IaCcaTc11B.150.017544
ORF1ab/nsp12248T248IaCcaTc11B.30.000831
ORF1ab/nsp12248T248IaCcaTc11C.10.002392
ORF1ab/nsp12248T248IaCcaTc11C.300.001727
ORF1ab/nsp12248T248IaCcaTc11P.1.120.000484
ORF1ab/nsp12248T248IaCcaTc11P.1.130.000898
ORF1ab/nsp12248T248IaCcaTc11P.1.40.000977
ORF1ab/nsp12248T248IaCcaTc11P.1.70.000319
ORF1ab/nsp12248T248IaCcaTc11Q.40.000455