CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = S709S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12709S709SS5101SsyntcTtcC7427340.98921815565-15567
ORF1ab/nsp12709S709SS5101SsyntcTtcA74250.0067385415565-15567
ORF1ab/nsp12709S709SS5101SsyntcTtcG74230.0040431315565-15567

Details of the mutation S709S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12709S709StcTtcC734742All0.00014
ORF1ab/nsp12709S709StcTtcA5742All0.000001
ORF1ab/nsp12709S709StcTtcG3742All0.000001
ORF1ab/nsp12709S709StcTtcC487487B.1.1.70.000436
ORF1ab/nsp12709S709StcTtcC9090B.1.5930.978261
ORF1ab/nsp12709S709StcTtcC2020AY.430.000089
ORF1ab/nsp12709S709StcTtcC1919B.1.5950.004958
ORF1ab/nsp12709S709StcTtcC1919B.1.617.20.000072
ORF1ab/nsp12709S709StcTtcC1111B.1.2430.000765
ORF1ab/nsp12709S709StcTtcC910AY.40.000014
ORF1ab/nsp12709S709StcTtcG110AY.40.000002
ORF1ab/nsp12709S709StcTtcC68B.10.000055
ORF1ab/nsp12709S709StcTtcA28B.10.000018
ORF1ab/nsp12709S709StcTtcC77B.1.1.1690.127273
ORF1ab/nsp12709S709StcTtcC44B.1.4290.000094
ORF1ab/nsp12709S709StcTtcC33AY.1180.000188
ORF1ab/nsp12709S709StcTtcC33AY.1200.000112
ORF1ab/nsp12709S709StcTtcC33AY.440.000018
ORF1ab/nsp12709S709StcTtcC33AY.60.000123
ORF1ab/nsp12709S709StcTtcC33B.1.1.1570.00274
ORF1ab/nsp12709S709StcTtcC33B.1.20.000026
ORF1ab/nsp12709S709StcTtcC33P.1.10.000953
ORF1ab/nsp12709S709StcTtcC22AY.1000.000092
ORF1ab/nsp12709S709StcTtcC22AY.1020.000053
ORF1ab/nsp12709S709StcTtcC22AY.1030.000012
ORF1ab/nsp12709S709StcTtcC22AY.250.000012
ORF1ab/nsp12709S709StcTtcC22AY.30.00002
ORF1ab/nsp12709S709StcTtcC12AY.840.000437
ORF1ab/nsp12709S709StcTtcA12AY.840.000437
ORF1ab/nsp12709S709StcTtcC22B.1.10.000036
ORF1ab/nsp12709S709StcTtcC22B.1.1.3370.007194
ORF1ab/nsp12709S709StcTtcC12B.1.2580.000067
ORF1ab/nsp12709S709StcTtcA12B.1.2580.000067
ORF1ab/nsp12709S709StcTtcC22B.1.5260.000047
ORF1ab/nsp12709S709StcTtcC22P.10.000032
ORF1ab/nsp12709S709StcTtcC11AY.1190.000035
ORF1ab/nsp12709S709StcTtcC11AY.230.00007
ORF1ab/nsp12709S709StcTtcC11AY.260.000028
ORF1ab/nsp12709S709StcTtcC11AY.3.10.000085
ORF1ab/nsp12709S709StcTtcC11AY.330.000067
ORF1ab/nsp12709S709StcTtcC11AY.340.000097
ORF1ab/nsp12709S709StcTtcC11AY.390.000025
ORF1ab/nsp12709S709StcTtcC11AY.4.50.000107
ORF1ab/nsp12709S709StcTtcC11AY.420.00004
ORF1ab/nsp12709S709StcTtcC11AY.480.000465
ORF1ab/nsp12709S709StcTtcC11AY.5.40.000277
ORF1ab/nsp12709S709StcTtcC11AY.640.000595
ORF1ab/nsp12709S709StcTtcC11AY.720.001361
ORF1ab/nsp12709S709StcTtcC11AY.990.001049
ORF1ab/nsp12709S709StcTtcC11B.1.1.2140.000055
ORF1ab/nsp12709S709StcTtcC11B.1.110.30.000718
ORF1ab/nsp12709S709StcTtcC11B.1.1570.002985
ORF1ab/nsp12709S709StcTtcC11B.1.177.120.000152
ORF1ab/nsp12709S709StcTtcG11B.1.2320.000537
ORF1ab/nsp12709S709StcTtcA11B.1.3980.002976
ORF1ab/nsp12709S709StcTtcG11B.1.4970.000315
ORF1ab/nsp12709S709StcTtcC11B.1.5960.000087
ORF1ab/nsp12709S709StcTtcC11B.1.6210.000089
ORF1ab/nsp12709S709StcTtcC11C.110.010638