CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 6 | S6L | S4398L | nonsyn | tCg | tTg | 11807 | 11793 | 0.998814 | 13457-13459 |
ORF1ab/nsp12 | 6 | S6L | S4398L | nonsyn | tCG | tTA | 11807 | 14 | 0.00118574 | 13457-13459 |
Details of the mutation S6L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 11793 | 11807 | All | 0.002256 |
ORF1ab/nsp12 | 6 | S6L | tCG | tTA | 14 | 11807 | All | 0.000003 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2301 | 2301 | AY.4 | 0.003581 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1657 | 1657 | B.1.623 | 0.888948 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1321 | 1321 | B.1.1.7 | 0.001183 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 825 | 829 | B.1.617.2 | 0.003106 |
ORF1ab/nsp12 | 6 | S6L | tCG | tTA | 4 | 829 | B.1.617.2 | 0.000015 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 762 | 762 | B.1.258.17 | 0.079226 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 476 | 476 | AY.25 | 0.002863 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 441 | 441 | AY.43 | 0.001954 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 396 | 396 | B.1.240 | 0.085363 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 203 | 203 | B.1.2 | 0.001787 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 198 | 198 | AY.3 | 0.001969 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 167 | 167 | AY.116 | 0.047892 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 161 | 161 | AY.44 | 0.00098 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 160 | 161 | B.1 | 0.001466 |
ORF1ab/nsp12 | 6 | S6L | tCG | tTA | 1 | 161 | B.1 | 0.000009 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 160 | 160 | B.1.564 | 0.068143 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 151 | 151 | AY.103 | 0.000938 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 137 | 137 | B.1.177 | 0.001804 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 107 | 107 | B.1.415.1 | 0.810606 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 97 | 97 | B.1.22 | 0.1278 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 84 | 84 | B.1.1 | 0.001524 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 74 | 74 | AY.115 | 0.385417 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 71 | 71 | B.1.273 | 0.922078 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 70 | 70 | AY.42 | 0.002816 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 54 | 54 | B.1.177.80 | 0.10325 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 51 | 51 | B.1.1.519 | 0.002025 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 48 | 48 | AY.47 | 0.001493 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 48 | 48 | B.1.526 | 0.001128 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 46 | 46 | B.1.160 | 0.001435 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 39 | 39 | B.1.429 | 0.000918 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 37 | 37 | AY.5 | 0.000764 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 37 | 37 | B.1.561 | 0.014688 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 33 | 33 | P.1 | 0.00052 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 31 | 31 | AY.39 | 0.000766 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 30 | 30 | AY.20 | 0.001166 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 30 | 30 | B.1.609 | 0.014382 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 28 | 28 | B.1.243 | 0.001948 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 24 | 26 | AY.113 | 0.003417 |
ORF1ab/nsp12 | 6 | S6L | tCG | tTA | 2 | 26 | AY.113 | 0.000285 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 26 | 26 | B.1.617.1 | 0.003353 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 24 | 25 | AY.102 | 0.000636 |
ORF1ab/nsp12 | 6 | S6L | tCG | tTA | 1 | 25 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 25 | 25 | AY.119 | 0.000883 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 25 | 25 | AY.98.1 | 0.001211 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 25 | 25 | B.1.221 | 0.001776 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 25 | 25 | B.1.427 | 0.001262 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 23 | 23 | AY.2 | 0.008191 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 22 | 22 | AY.29 | 0.000347 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 21 | 21 | AY.100 | 0.000966 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 21 | 21 | AY.26 | 0.000595 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 20 | 20 | AY.4.2 | 0.000434 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 20 | 20 | B.1.258 | 0.001331 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 19 | 19 | AY.117 | 0.001606 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 19 | 19 | AY.46.6 | 0.001372 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 19 | 19 | B.1.36.17 | 0.009387 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 18 | 18 | AY.6 | 0.00074 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 18 | 18 | P.2 | 0.003359 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 17 | 17 | B.1.351 | 0.000505 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 17 | 17 | B.1.621.1 | 0.008599 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 16 | 16 | AY.34 | 0.001551 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 15 | 15 | B.1.596 | 0.001307 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 14 | 14 | B.1.1.214 | 0.000776 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 14 | 14 | C.37 | 0.001625 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 14 | 14 | D.2 | 0.001051 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 13 | 13 | B | 0.001662 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 13 | 13 | Q.7 | 0.014444 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 12 | 12 | AY.27 | 0.000777 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 12 | 12 | AY.3.1 | 0.001023 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 11 | 11 | AY.118 | 0.000689 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 11 | 11 | AY.23 | 0.000767 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 11 | 11 | AY.9 | 0.000744 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 11 | 11 | B.1.177.21 | 0.000841 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 10 | 10 | AD.2 | 0.00219 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 10 | 10 | AY.4.2.1 | 0.00149 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 10 | 10 | AY.46 | 0.001041 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 10 | 10 | B.1.621 | 0.000885 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 10 | 10 | C.30 | 0.017271 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 9 | 9 | AY.120 | 0.000335 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 9 | 9 | AY.98 | 0.000711 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 9 | 9 | B.1.1.319 | 0.157895 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 8 | 8 | AY.107 | 0.003728 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 8 | 8 | AY.33 | 0.000534 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 8 | 8 | AY.45 | 0.000973 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 8 | 8 | B.1.1.222 | 0.001632 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 8 | 8 | B.1.324 | 0.012841 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 8 | 8 | B.1.36 | 0.001167 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 8 | 8 | B.1.409 | 0.00625 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 8 | 8 | B.1.438.1 | 0.000858 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 7 | 7 | AY.4.5 | 0.000752 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 7 | 7 | AY.75 | 0.000392 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 7 | 7 | B.1.1.284 | 0.000752 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 7 | 7 | B.1.177.6 | 0.006836 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 7 | 7 | B.1.36.28 | 0.04023 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 7 | 7 | B.6 | 0.006369 |
ORF1ab/nsp12 | 6 | S6L | tCG | tTA | 3 | 6 | AY.109 | 0.002219 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 3 | 6 | AY.109 | 0.002219 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 6 | 6 | AY.5.3 | 0.002024 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 6 | 6 | AY.84 | 0.002625 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 6 | 6 | B.1.1.306 | 0.00263 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 6 | 6 | B.1.1.372 | 0.004132 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 6 | 6 | B.1.1.39 | 0.003058 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 6 | 6 | B.1.258.24 | 0.064516 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 6 | 6 | B.1.367 | 0.004754 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 6 | 6 | B.1.369 | 0.001711 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 6 | 6 | B.1.391 | 0.006764 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 6 | 6 | B.1.399 | 0.011605 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 6 | 6 | B.1.574 | 0.012903 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 6 | 6 | C.36 | 0.005464 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 5 | 5 | AY.101 | 0.002452 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 5 | 5 | AY.121 | 0.000677 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 5 | 5 | AY.46.4 | 0.000823 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 5 | 5 | AY.54 | 0.000477 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 5 | 5 | B.1.1.153 | 0.005476 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 5 | 5 | B.1.1.243 | 0.020408 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 5 | 5 | B.1.177.56 | 0.003338 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 5 | 5 | B.1.478 | 0.058824 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 5 | 5 | B.1.499 | 0.005252 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 5 | 5 | B.1.556 | 0.037594 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 4 | 4 | AY.108 | 0.00441 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 4 | 4 | AY.116.1 | 0.001246 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 4 | 4 | AY.32 | 0.00213 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 4 | 4 | AY.41 | 0.001176 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 4 | 4 | AY.62 | 0.001743 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 4 | 4 | B.1.1.279 | 0.004484 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 4 | 4 | B.1.1.434 | 0.001394 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 4 | 4 | B.1.177.7 | 0.000659 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 4 | 4 | B.1.177.86 | 0.000734 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 4 | 4 | B.1.311 | 0.001098 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 4 | 4 | B.1.525 | 0.000453 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 4 | 4 | R.1 | 0.00036 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 3 | 3 | AY.105 | 0.001929 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 3 | 3 | AY.12 | 0.000948 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 3 | 3 | AY.70 | 0.000626 |
ORF1ab/nsp12 | 6 | S6L | tCG | tTA | 3 | 3 | AY.78 | 0.004622 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 3 | 3 | AY.83 | 0.005172 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 3 | 3 | AY.91.1 | 0.012195 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 3 | 3 | AY.93 | 0.000819 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 3 | 3 | AY.99 | 0.003148 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 3 | 3 | B.1.1.253 | 0.007519 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 3 | 3 | B.1.1.50 | 0.002037 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 3 | 3 | B.1.153 | 0.056604 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 3 | 3 | B.1.160.20 | 0.026786 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 3 | 3 | B.1.177.10 | 0.002634 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 3 | 3 | B.1.177.17 | 0.002463 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 3 | 3 | B.1.177.79 | 0.007026 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 3 | 3 | B.1.351.2 | 0.000908 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 3 | 3 | B.1.532 | 0.018634 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 3 | 3 | P.1.12 | 0.001452 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 3 | 3 | Q.3 | 0.000435 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | A.2 | 0.001324 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | AE.8 | 0.000978 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | AY.120.2.1 | 0.000997 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | AY.79 | 0.002421 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | AY.88 | 0.001768 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | B.1.1.141 | 0.004024 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | B.1.1.170 | 0.002494 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | B.1.1.29 | 0.020619 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | B.1.1.448 | 0.004065 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | B.1.1.486 | 0.003155 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | B.1.108 | 0.011628 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | B.1.160.16 | 0.001859 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | B.1.166 | 0.016949 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | B.1.177.15 | 0.001262 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | B.1.177.33 | 0.003289 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | B.1.177.40 | 0.010309 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | B.1.236 | 0.004107 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | B.1.239 | 0.002442 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | B.1.258.2 | 0.009009 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | B.10 | 0.016529 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | C.18 | 0.005181 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | C.35 | 0.001548 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | P.1.2 | 0.002312 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 2 | 2 | Q.2 | 0.001227 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | A | 0.000387 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.1.132 | 0.014925 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.1.152 | 0.04 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.1.169 | 0.018182 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.1.224 | 0.014286 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.1.227 | 0.004348 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.1.335 | 0.012987 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.1.356 | 0.008547 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.1.393 | 0.111111 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.1.75 | 0.010638 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.142 | 0.002899 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.160.22 | 0.006757 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.160.28 | 0.002924 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.160.32 | 0.004292 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.161 | 0.017241 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.177.72 | 0.00339 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.203 | 0.0625 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.36.26 | 0.002857 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.39 | 0.003906 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.506 | 0.02381 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.531 | 0.083333 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.595.1 | 0.005848 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | C.23 | 0.005814 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | C.36.2 | 0.034483 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | D.3 | 0.005917 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | P.1.8 | 0.004785 |
ORF1ab/nsp12 | 6 | S6L | tCg | tTg | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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