CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = S607S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12607S607SS4999SsynagTagC236236115259-15261

Details of the mutation S607S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12607S607SagTagC236236All0.000045
ORF1ab/nsp12607S607SagTagC5858AY.20.020655
ORF1ab/nsp12607S607SagTagC3232AY.40.00005
ORF1ab/nsp12607S607SagTagC3131AY.440.000189
ORF1ab/nsp12607S607SagTagC2626B.1.617.20.000098
ORF1ab/nsp12607S607SagTagC1212AY.1020.000318
ORF1ab/nsp12607S607SagTagC1111AY.960.022822
ORF1ab/nsp12607S607SagTagC1010AY.1030.000062
ORF1ab/nsp12607S607SagTagC66AY.250.000036
ORF1ab/nsp12607S607SagTagC44AY.240.001724
ORF1ab/nsp12607S607SagTagC44B.10.000037
ORF1ab/nsp12607S607SagTagC44B.1.1.70.000004
ORF1ab/nsp12607S607SagTagC33AY.10.001187
ORF1ab/nsp12607S607SagTagC33B.1.4990.003151
ORF1ab/nsp12607S607SagTagC33P.10.000047
ORF1ab/nsp12607S607SagTagC22AY.460.000208
ORF1ab/nsp12607S607SagTagC22B.1.1.4480.004065
ORF1ab/nsp12607S607SagTagC22B.1.1770.000026
ORF1ab/nsp12607S607SagTagC22B.1.4290.000047
ORF1ab/nsp12607S607SagTagC22P.1.140.000096
ORF1ab/nsp12607S607SagTagC11A.2.50.000499
ORF1ab/nsp12607S607SagTagC11AY.1080.001103
ORF1ab/nsp12607S607SagTagC11AY.1200.000037
ORF1ab/nsp12607S607SagTagC11AY.200.000039
ORF1ab/nsp12607S607SagTagC11AY.3.10.000085
ORF1ab/nsp12607S607SagTagC11AY.390.000025
ORF1ab/nsp12607S607SagTagC11AY.430.000004
ORF1ab/nsp12607S607SagTagC11AY.620.000436
ORF1ab/nsp12607S607SagTagC11AY.680.000274
ORF1ab/nsp12607S607SagTagC11AY.730.000665
ORF1ab/nsp12607S607SagTagC11AY.98.10.000048
ORF1ab/nsp12607S607SagTagC11B0.000128
ORF1ab/nsp12607S607SagTagC11B.1.1600.000031
ORF1ab/nsp12607S607SagTagC11B.1.20.000009
ORF1ab/nsp12607S607SagTagC11B.1.258.180.1
ORF1ab/nsp12607S607SagTagC11B.1.351.50.0006
ORF1ab/nsp12607S607SagTagC11B.1.3960.000706
ORF1ab/nsp12607S607SagTagC11B.1.466.20.000391
ORF1ab/nsp12607S607SagTagC11C.20.016129

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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