CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = S607R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12607S607RS4999RnonsynagTagA3583440.96089415259-15261
ORF1ab/nsp12607S607RS4999RnonsynAgtCgt35880.022346415259-15261
ORF1ab/nsp12607S607RS4999RnonsynagTagG35860.016759815259-15261

Details of the mutation S607R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12607S607RagTagA344358All0.000066
ORF1ab/nsp12607S607RAgtCgt8358All0.000002
ORF1ab/nsp12607S607RagTagG6358All0.000001
ORF1ab/nsp12607S607RagTagA143143B.1.1.3170.058872
ORF1ab/nsp12607S607RagTagA124127B.1.1.70.000111
ORF1ab/nsp12607S607RagTagG2127B.1.1.70.000002
ORF1ab/nsp12607S607RAgtCgt1127B.1.1.70.000001
ORF1ab/nsp12607S607RagTagA5353B.1.177.730.030011
ORF1ab/nsp12607S607RagTagA77AY.260.000198
ORF1ab/nsp12607S607RagTagA45B.10.000037
ORF1ab/nsp12607S607RagTagG15B.10.000009
ORF1ab/nsp12607S607RagTagA34B.1.10.000054
ORF1ab/nsp12607S607RAgtCgt14B.1.10.000018
ORF1ab/nsp12607S607RAgtCgt44P.1.20.004624
ORF1ab/nsp12607S607RagTagA22AY.390.000049
ORF1ab/nsp12607S607RagTagA22AY.40.000003
ORF1ab/nsp12607S607RagTagG11A.20.000662
ORF1ab/nsp12607S607RagTagA11AY.9.20.000037
ORF1ab/nsp12607S607RAgtCgt11B.1.1.1690.018182
ORF1ab/nsp12607S607RagTagG11B.1.1180.006711
ORF1ab/nsp12607S607RagTagA11B.1.1770.000013
ORF1ab/nsp12607S607RagTagG11B.1.20.000009
ORF1ab/nsp12607S607RagTagA11B.1.4170.028571
ORF1ab/nsp12607S607RagTagA11B.1.4290.000024
ORF1ab/nsp12607S607RagTagA11B.1.5260.000024
ORF1ab/nsp12607S607RagTagA11B.1.5580.004566
ORF1ab/nsp12607S607RAgtCgt11B.1.617.20.000004