CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 451 | S451S | S4843S | syn | agC | agT | 1513 | 1513 | 1 | 14791-14793 |
Details of the mutation S451S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1513 | 1513 | All | 0.000289 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 454 | 454 | B.1.1.7 | 0.000406 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 180 | 180 | AY.4 | 0.00028 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 85 | 85 | B.1 | 0.000779 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 69 | 69 | AY.103 | 0.000428 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 49 | 49 | B.1.1 | 0.000889 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 44 | 44 | B.1.617.2 | 0.000166 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 37 | 37 | AY.36 | 0.005484 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 35 | 35 | AY.43 | 0.000155 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 34 | 34 | B.1.2 | 0.000299 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 30 | 30 | B.1.429 | 0.000706 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 26 | 26 | C.36.3 | 0.014748 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 21 | 21 | P.1 | 0.000331 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 20 | 20 | B.1.1.203 | 0.338983 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 18 | 18 | B.1.177 | 0.000237 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 17 | 17 | B.1.526 | 0.0004 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 15 | 15 | AY.39 | 0.000371 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 15 | 15 | AY.9.1 | 0.001256 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 15 | 15 | AY.9.2 | 0.000551 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 14 | 14 | B.1.177.60 | 0.003058 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 14 | 14 | B.1.243 | 0.000974 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 13 | 13 | AY.25 | 0.000078 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 13 | 13 | AY.26 | 0.000368 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 13 | 13 | AY.44 | 0.000079 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 12 | 12 | AY.4.2 | 0.00026 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 12 | 12 | B.1.351 | 0.000357 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 11 | 11 | B.1.258 | 0.000732 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 10 | 10 | AY.13 | 0.00161 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 10 | 10 | B.1.1.350 | 0.4 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 9 | 9 | AY.102 | 0.000239 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 8 | 8 | B.1.1.291 | 0.005939 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 8 | 8 | B.1.234 | 0.001056 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 8 | 8 | B.1.427 | 0.000404 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 7 | 7 | Q.1 | 0.000884 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 6 | 6 | AY.118 | 0.000376 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 5 | 5 | AY.6 | 0.000206 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 5 | 5 | B.1.1.348 | 0.003981 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 5 | 5 | B.1.177.5 | 0.006211 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 5 | 5 | B.1.36.29 | 0.002587 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 5 | 5 | C.1 | 0.011962 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 5 | 5 | Q.3 | 0.000725 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 4 | 4 | A.29 | 0.021277 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 4 | 4 | AY.120.2.1 | 0.001993 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 4 | 4 | AY.65 | 0.002132 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 4 | 4 | P.1.1 | 0.001271 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 3 | 3 | AY.55 | 0.002752 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 3 | 3 | B.1.111 | 0.003525 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 3 | 3 | B.1.239 | 0.003663 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 2 | 2 | AE.8 | 0.000978 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 2 | 2 | B.1.177.87 | 0.001456 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 2 | 2 | B.1.433 | 0.00639 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | B.1.1.181 | 0.004545 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | B.1.177.24 | 0.001295 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | B.1.258.16 | 0.001637 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | B.1.570 | 0.002941 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | C.1.1 | 0.076923 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp12 | 451 | S451S | agC | agT | 1 | 1 | C.37 | 0.000116 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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