CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 285 | R285C | R4677C | nonsyn | Cgt | Tgt | 392 | 391 | 0.997449 | 14293-14295 |
ORF1ab/nsp12 | 285 | R285C | R4677C | nonsyn | CgT | TgC | 392 | 1 | 0.00255102 | 14293-14295 |
Details of the mutation R285C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 391 | 392 | All | 0.000075 |
ORF1ab/nsp12 | 285 | R285C | CgT | TgC | 1 | 392 | All | 0 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 71 | 71 | B.1.1.7 | 0.000064 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 50 | 50 | B.1.1.519 | 0.001986 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 37 | 37 | AY.4 | 0.000058 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 25 | 25 | B.1.429 | 0.000588 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 22 | 22 | B.1.617.2 | 0.000083 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 20 | 20 | B.1.2 | 0.000176 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 20 | 20 | P.1 | 0.000315 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 10 | 10 | B.1.637 | 0.000731 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 8 | 8 | AY.44 | 0.000049 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 6 | 6 | AY.118 | 0.000376 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 6 | 6 | B.1.1.170 | 0.007481 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 5 | 5 | B.1.177.82 | 0.002387 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 5 | 5 | B.1.265 | 0.006353 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 3 | 3 | AY.73 | 0.001996 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp12 | 285 | R285C | CgT | TgC | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 2 | 2 | A.28 | 0.005291 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 2 | 2 | B.1.1.253 | 0.005013 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp12 | 285 | R285C | Cgt | Tgt | 1 | 1 | Q.3 | 0.000145 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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