CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = R249R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12249R249RR4641RsynagGagA14415143100.99271614185-14187
ORF1ab/nsp12249R249RR4641RsynAggCgg144151050.0072840814185-14187

Details of the mutation R249R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12249R249RagGagA1431014415All0.002737
ORF1ab/nsp12249R249RAggCgg10514415All0.00002
ORF1ab/nsp12249R249RagGagA98259825AY.540.936785
ORF1ab/nsp12249R249RagGagA14551455B.1.20.012812
ORF1ab/nsp12249R249RagGagA10731077B.1.617.20.00404
ORF1ab/nsp12249R249RAggCgg41077B.1.617.20.000015
ORF1ab/nsp12249R249RagGagA598598B.1.1.70.000535
ORF1ab/nsp12249R249RagGagA362362B.1.3960.255469
ORF1ab/nsp12249R249RagGagA246250AY.40.000383
ORF1ab/nsp12249R249RAggCgg4250AY.40.000006
ORF1ab/nsp12249R249RagGagA149149C.30.11
ORF1ab/nsp12249R249RagGagA116116AY.1030.00072
ORF1ab/nsp12249R249RagGagA100101B.10.000916
ORF1ab/nsp12249R249RAggCgg1101B.10.000009
ORF1ab/nsp12249R249RAggCgg8790B.1.1.2140.004825
ORF1ab/nsp12249R249RagGagA390B.1.1.2140.000166
ORF1ab/nsp12249R249RagGagA2727AY.250.000162
ORF1ab/nsp12249R249RagGagA2020B.1.1.3060.008768
ORF1ab/nsp12249R249RagGagA1919AY.440.000116
ORF1ab/nsp12249R249RagGagA1818AY.620.007843
ORF1ab/nsp12249R249RagGagA1717P.10.000268
ORF1ab/nsp12249R249RagGagA1616B.1.5960.001394
ORF1ab/nsp12249R249RagGagA1313AY.430.000058
ORF1ab/nsp12249R249RagGagA1313AY.750.000728
ORF1ab/nsp12249R249RagGagA1313B.1.4290.000306
ORF1ab/nsp12249R249RagGagA1111B.1.10.0002
ORF1ab/nsp12249R249RagGagA1111B.1.1.5190.000437
ORF1ab/nsp12249R249RagGagA1111B.1.3510.000327
ORF1ab/nsp12249R249RagGagA1010AY.390.000247
ORF1ab/nsp12249R249RagGagA1010AY.7.10.001127
ORF1ab/nsp12249R249RagGagA99AY.160.003417
ORF1ab/nsp12249R249RagGagA99B.1.1770.000119
ORF1ab/nsp12249R249RagGagA99B.1.5260.000212
ORF1ab/nsp12249R249RAggCgg57AY.1190.000177
ORF1ab/nsp12249R249RagGagA27AY.1190.000071
ORF1ab/nsp12249R249RagGagA66AY.610.000629
ORF1ab/nsp12249R249RagGagA55AY.1170.000423
ORF1ab/nsp12249R249RagGagA55AY.520.004072
ORF1ab/nsp12249R249RagGagA44AY.39.10.000158
ORF1ab/nsp12249R249RagGagA44AY.450.000487
ORF1ab/nsp12249R249RagGagA44AY.9.20.000147
ORF1ab/nsp12249R249RagGagA44B.1.160.160.003717
ORF1ab/nsp12249R249RagGagA44B.1.2210.000284
ORF1ab/nsp12249R249RAggCgg34B.1.2580.0002
ORF1ab/nsp12249R249RagGagA14B.1.2580.000067
ORF1ab/nsp12249R249RagGagA44P.1.150.000929
ORF1ab/nsp12249R249RagGagA33AY.30.00003
ORF1ab/nsp12249R249RagGagA33AY.46.40.000494
ORF1ab/nsp12249R249RagGagA33AY.510.002727
ORF1ab/nsp12249R249RagGagA33AZ.10.002602
ORF1ab/nsp12249R249RagGagA33B.1.1.2190.015
ORF1ab/nsp12249R249RagGagA33B.1.2100.006397
ORF1ab/nsp12249R249RagGagA33B.1.3110.000824
ORF1ab/nsp12249R249RagGagA22AY.1200.000074
ORF1ab/nsp12249R249RagGagA22AY.16.10.00094
ORF1ab/nsp12249R249RagGagA22AY.200.000078
ORF1ab/nsp12249R249RagGagA22AY.23.10.000835
ORF1ab/nsp12249R249RagGagA22AY.930.000546
ORF1ab/nsp12249R249RagGagA22B.1.1.3170.000823
ORF1ab/nsp12249R249RagGagA22B.1.1.4160.00181
ORF1ab/nsp12249R249RagGagA22B.1.1.5280.009615
ORF1ab/nsp12249R249RagGagA22B.1.2340.000264
ORF1ab/nsp12249R249RagGagA22B.1.2430.000139
ORF1ab/nsp12249R249RagGagA22B.1.258.110.000793
ORF1ab/nsp12249R249RagGagA22B.1.2840.026316
ORF1ab/nsp12249R249RagGagA22B.1.3690.00057
ORF1ab/nsp12249R249RagGagA22B.1.5380.016129
ORF1ab/nsp12249R249RagGagA22B.1.5800.00813
ORF1ab/nsp12249R249RagGagA22B.1.5950.000522
ORF1ab/nsp12249R249RagGagA22B.1.617.10.000258
ORF1ab/nsp12249R249RagGagA22B.1.6210.000177
ORF1ab/nsp12249R249RagGagA110.055556
ORF1ab/nsp12249R249RagGagA11A.60.005128
ORF1ab/nsp12249R249RagGagA11AU.10.001266
ORF1ab/nsp12249R249RagGagA11AY.1160.000287
ORF1ab/nsp12249R249RagGagA11AY.140.000088
ORF1ab/nsp12249R249RagGagA11AY.260.000028
ORF1ab/nsp12249R249RagGagA11AY.340.000097
ORF1ab/nsp12249R249RagGagA11AY.370.000316
ORF1ab/nsp12249R249RagGagA11AY.4.10.000737
ORF1ab/nsp12249R249RagGagA11AY.4.50.000107
ORF1ab/nsp12249R249RagGagA11AY.460.000104
ORF1ab/nsp12249R249RagGagA11AY.46.60.000072
ORF1ab/nsp12249R249RagGagA11AY.470.000031
ORF1ab/nsp12249R249RagGagA11AY.50.000021
ORF1ab/nsp12249R249RagGagA11AY.5.40.000277
ORF1ab/nsp12249R249RagGagA11AY.530.000288
ORF1ab/nsp12249R249RagGagA11AY.75.10.00018
ORF1ab/nsp12249R249RagGagA11AY.980.000079
ORF1ab/nsp12249R249RagGagA11AY.98.10.000048
ORF1ab/nsp12249R249RagGagA11B0.000128
ORF1ab/nsp12249R249RagGagA11B.1.1.10.000327
ORF1ab/nsp12249R249RagGagA11B.1.1.160.055556
ORF1ab/nsp12249R249RagGagA11B.1.1.1890.001513
ORF1ab/nsp12249R249RagGagA11B.1.1.1940.00495
ORF1ab/nsp12249R249RagGagA11B.1.1.3290.003846
ORF1ab/nsp12249R249RagGagA11B.1.1.330.000421
ORF1ab/nsp12249R249RagGagA11B.1.1.370.000193
ORF1ab/nsp12249R249RagGagA11B.1.1.500.000679
ORF1ab/nsp12249R249RagGagA11B.1.1390.000733
ORF1ab/nsp12249R249RagGagA11B.1.177.150.000631
ORF1ab/nsp12249R249RagGagA11B.1.177.210.000076
ORF1ab/nsp12249R249RagGagA11B.1.177.330.001645
ORF1ab/nsp12249R249RagGagA11B.1.258.200.015873
ORF1ab/nsp12249R249RagGagA11B.1.2650.001271
ORF1ab/nsp12249R249RagGagA11B.1.2810.021739
ORF1ab/nsp12249R249RagGagA11B.1.360.000146
ORF1ab/nsp12249R249RAggCgg11B.1.36.180.00042
ORF1ab/nsp12249R249RagGagA11B.1.3620.001541
ORF1ab/nsp12249R249RagGagA11B.1.3810.007812
ORF1ab/nsp12249R249RagGagA11B.1.4270.00005
ORF1ab/nsp12249R249RagGagA11B.1.5250.000113
ORF1ab/nsp12249R249RagGagA11B.1.5610.000397
ORF1ab/nsp12249R249RagGagA11B.1.5770.000687
ORF1ab/nsp12249R249RagGagA11B.1.5880.00091
ORF1ab/nsp12249R249RagGagA11B.1.5970.00463
ORF1ab/nsp12249R249RagGagA11B.1.6280.000352
ORF1ab/nsp12249R249RagGagA11B.400.000364
ORF1ab/nsp12249R249RagGagA11C.370.000116