CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = R173C

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12173R173CR4565CnonsynCgcTgc289228910.99965413957-13959
ORF1ab/nsp12173R173CR4565CnonsynCgCTgT289210.00034578113957-13959

Details of the mutation R173C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12173R173CCgcTgc28912892All0.000553
ORF1ab/nsp12173R173CCgCTgT12892All0
ORF1ab/nsp12173R173CCgcTgc998998B.1.438.10.107047
ORF1ab/nsp12173R173CCgcTgc269269AY.40.000419
ORF1ab/nsp12173R173CCgcTgc235235B.1.5750.071299
ORF1ab/nsp12173R173CCgcTgc196196B.1.6120.519894
ORF1ab/nsp12173R173CCgcTgc148148AY.250.00089
ORF1ab/nsp12173R173CCgcTgc110111B.1.617.20.000414
ORF1ab/nsp12173R173CCgCTgT1111B.1.617.20.000004
ORF1ab/nsp12173R173CCgcTgc106106AY.1030.000658
ORF1ab/nsp12173R173CCgcTgc8989AY.39.10.003526
ORF1ab/nsp12173R173CCgcTgc7575B.1.1.70.000067
ORF1ab/nsp12173R173CCgcTgc5858AY.20.020655
ORF1ab/nsp12173R173CCgcTgc4646B.1.10.000834
ORF1ab/nsp12173R173CCgcTgc4343B.1.36.350.111979
ORF1ab/nsp12173R173CCgcTgc4040AY.440.000243
ORF1ab/nsp12173R173CCgcTgc3737B.10.000339
ORF1ab/nsp12173R173CCgcTgc3131AY.430.000137
ORF1ab/nsp12173R173CCgcTgc2929AY.30.000288
ORF1ab/nsp12173R173CCgcTgc2020B.1.1770.000263
ORF1ab/nsp12173R173CCgcTgc1818AY.200.0007
ORF1ab/nsp12173R173CCgcTgc1414B.1.20.000123
ORF1ab/nsp12173R173CCgcTgc1212AY.290.000189
ORF1ab/nsp12173R173CCgcTgc1212B.1.1.5190.000477
ORF1ab/nsp12173R173CCgcTgc1212C.370.001393
ORF1ab/nsp12173R173CCgcTgc1111AY.270.000712
ORF1ab/nsp12173R173CCgcTgc1010AY.1000.00046
ORF1ab/nsp12173R173CCgcTgc1010AY.260.000283
ORF1ab/nsp12173R173CCgcTgc1010R.10.0009
ORF1ab/nsp12173R173CCgcTgc99B.1.2410.007305
ORF1ab/nsp12173R173CCgcTgc88AY.910.005844
ORF1ab/nsp12173R173CCgcTgc77AY.390.000173
ORF1ab/nsp12173R173CCgcTgc77AY.4.20.000152
ORF1ab/nsp12173R173CCgcTgc77AY.50.000145
ORF1ab/nsp12173R173CCgcTgc77AY.99.20.000645
ORF1ab/nsp12173R173CCgcTgc66AY.230.000418
ORF1ab/nsp12173R173CCgcTgc66B.1.2430.000418
ORF1ab/nsp12173R173CCgcTgc66P.1.140.000287
ORF1ab/nsp12173R173CCgcTgc55AY.1020.000133
ORF1ab/nsp12173R173CCgcTgc55AY.330.000334
ORF1ab/nsp12173R173CCgcTgc55AY.46.40.000823
ORF1ab/nsp12173R173CCgcTgc55B.1.1.2430.020408
ORF1ab/nsp12173R173CCgcTgc55B.1.4270.000252
ORF1ab/nsp12173R173CCgcTgc55D.20.000375
ORF1ab/nsp12173R173CCgcTgc55P.1.160.001871
ORF1ab/nsp12173R173CCgcTgc44AY.1130.00057
ORF1ab/nsp12173R173CCgcTgc44AY.1180.000251
ORF1ab/nsp12173R173CCgcTgc44AY.160.001519
ORF1ab/nsp12173R173CCgcTgc44AY.60.000165
ORF1ab/nsp12173R173CCgcTgc44B.1.1.2140.000222
ORF1ab/nsp12173R173CCgcTgc44B.1.177.520.00703
ORF1ab/nsp12173R173CCgcTgc44B.1.2210.000284
ORF1ab/nsp12173R173CCgcTgc44P.10.000063
ORF1ab/nsp12173R173CCgcTgc33AY.10.001187
ORF1ab/nsp12173R173CCgcTgc33AY.300.001187
ORF1ab/nsp12173R173CCgcTgc33AY.470.000093
ORF1ab/nsp12173R173CCgcTgc33AY.90.000203
ORF1ab/nsp12173R173CCgcTgc33B0.000383
ORF1ab/nsp12173R173CCgcTgc33B.1.4290.000071
ORF1ab/nsp12173R173CCgcTgc33B.1.5260.000071
ORF1ab/nsp12173R173CCgcTgc33B.1.564.10.004732
ORF1ab/nsp12173R173CCgcTgc33B.1.5820.001472
ORF1ab/nsp12173R173CCgcTgc33B.1.5960.000261
ORF1ab/nsp12173R173CCgcTgc22AY.1190.000071
ORF1ab/nsp12173R173CCgcTgc22AY.1200.000074
ORF1ab/nsp12173R173CCgcTgc22AY.16.10.00094
ORF1ab/nsp12173R173CCgcTgc22AY.5.40.000553
ORF1ab/nsp12173R173CCgcTgc22AY.590.001059
ORF1ab/nsp12173R173CCgcTgc22AY.850.000854
ORF1ab/nsp12173R173CCgcTgc22AY.980.000158
ORF1ab/nsp12173R173CCgcTgc22B.1.1.10.000653
ORF1ab/nsp12173R173CCgcTgc22B.1.1.2160.001781
ORF1ab/nsp12173R173CCgcTgc22B.1.1.2220.000408
ORF1ab/nsp12173R173CCgcTgc22B.1.1280.001271
ORF1ab/nsp12173R173CCgcTgc22B.1.2060.001631
ORF1ab/nsp12173R173CCgcTgc22B.1.4380.013072
ORF1ab/nsp12173R173CCgcTgc22B.1.4990.002101
ORF1ab/nsp12173R173CCgcTgc22B.1.5680.002222
ORF1ab/nsp12173R173CCgcTgc22B.1.6210.000177
ORF1ab/nsp12173R173CCgcTgc22B.1.6370.000146
ORF1ab/nsp12173R173CCgcTgc11A.280.002646
ORF1ab/nsp12173R173CCgcTgc11AY.1010.00049
ORF1ab/nsp12173R173CCgcTgc11AY.1100.000113
ORF1ab/nsp12173R173CCgcTgc11AY.120.000316
ORF1ab/nsp12173R173CCgcTgc11AY.120.10.000321
ORF1ab/nsp12173R173CCgcTgc11AY.1210.000135
ORF1ab/nsp12173R173CCgcTgc11AY.140.000088
ORF1ab/nsp12173R173CCgcTgc11AY.220.002092
ORF1ab/nsp12173R173CCgcTgc11AY.23.10.000417
ORF1ab/nsp12173R173CCgcTgc11AY.4.40.000409
ORF1ab/nsp12173R173CCgcTgc11AY.420.00004
ORF1ab/nsp12173R173CCgcTgc11AY.460.000104
ORF1ab/nsp12173R173CCgcTgc11AY.46.60.000072
ORF1ab/nsp12173R173CCgcTgc11AY.530.000288
ORF1ab/nsp12173R173CCgcTgc11AY.540.000095
ORF1ab/nsp12173R173CCgcTgc11AY.610.000105
ORF1ab/nsp12173R173CCgcTgc11AY.620.000436
ORF1ab/nsp12173R173CCgcTgc11AY.670.000464
ORF1ab/nsp12173R173CCgcTgc11AY.680.000274
ORF1ab/nsp12173R173CCgcTgc11AY.730.000665
ORF1ab/nsp12173R173CCgcTgc11AY.740.000116
ORF1ab/nsp12173R173CCgcTgc11AY.75.10.00018
ORF1ab/nsp12173R173CCgcTgc11AY.840.000437
ORF1ab/nsp12173R173CCgcTgc11AY.920.000287
ORF1ab/nsp12173R173CCgcTgc11AY.960.002075
ORF1ab/nsp12173R173CCgcTgc11AY.98.10.000048
ORF1ab/nsp12173R173CCgcTgc11AY.990.001049
ORF1ab/nsp12173R173CCgcTgc11B.1.1.280.000311
ORF1ab/nsp12173R173CCgcTgc11B.1.1.2910.000742
ORF1ab/nsp12173R173CCgcTgc11B.1.1.3010.001179
ORF1ab/nsp12173R173CCgcTgc11B.1.1.3260.001761
ORF1ab/nsp12173R173CCgcTgc11B.1.1.330.000421
ORF1ab/nsp12173R173CCgcTgc11B.1.1.3430.020833
ORF1ab/nsp12173R173CCgcTgc11B.1.1.3880.045455
ORF1ab/nsp12173R173CCgcTgc11B.1.1.4060.006494
ORF1ab/nsp12173R173CCgcTgc11B.1.1.4340.000349
ORF1ab/nsp12173R173CCgcTgc11B.1.1.630.000386
ORF1ab/nsp12173R173CCgcTgc11B.1.110.30.000718
ORF1ab/nsp12173R173CCgcTgc11B.1.177.600.000218
ORF1ab/nsp12173R173CCgcTgc11B.1.177.810.000189
ORF1ab/nsp12173R173CCgcTgc11B.1.2340.000132
ORF1ab/nsp12173R173CCgcTgc11B.1.2580.000067
ORF1ab/nsp12173R173CCgcTgc11B.1.36.270.000763
ORF1ab/nsp12173R173CCgcTgc11B.1.36.290.000517
ORF1ab/nsp12173R173CCgcTgc11B.1.3600.012658
ORF1ab/nsp12173R173CCgcTgc11B.1.3770.004566
ORF1ab/nsp12173R173CCgcTgc11B.1.416.10.001563
ORF1ab/nsp12173R173CCgcTgc11B.1.4220.000812
ORF1ab/nsp12173R173CCgcTgc11B.1.4530.003236
ORF1ab/nsp12173R173CCgcTgc11B.1.5610.000397
ORF1ab/nsp12173R173CCgcTgc11B.1.5770.000687
ORF1ab/nsp12173R173CCgcTgc11B.1.6230.000536
ORF1ab/nsp12173R173CCgcTgc11B.530.011765
ORF1ab/nsp12173R173CCgcTgc11B.610.005747
ORF1ab/nsp12173R173CCgcTgc11C.380.008065
ORF1ab/nsp12173R173CCgcTgc11N.10.016949
ORF1ab/nsp12173R173CCgcTgc11P.1.150.000232
ORF1ab/nsp12173R173CCgcTgc11Q.80.000165