CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 612 | P612P | P5004P | syn | ccT | ccA | 5010 | 4601 | 0.918363 | 15274-15276 |
ORF1ab/nsp12 | 612 | P612P | P5004P | syn | ccT | ccC | 5010 | 336 | 0.0670659 | 15274-15276 |
ORF1ab/nsp12 | 612 | P612P | P5004P | syn | ccT | ccG | 5010 | 73 | 0.0145709 | 15274-15276 |
Details of the mutation P612P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 4601 | 5010 | All | 0.00088 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 336 | 5010 | All | 0.000064 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccG | 73 | 5010 | All | 0.000014 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 1941 | 1941 | B.1.582 | 0.952404 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 1049 | 1054 | B.1 | 0.009608 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 4 | 1054 | B.1 | 0.000037 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccG | 1 | 1054 | B.1 | 0.000009 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 846 | 846 | B.1.568 | 0.94 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 375 | 375 | B.1.612 | 0.994695 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 100 | 100 | B.1.581 | 0.943396 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 86 | 96 | B.1.2 | 0.000757 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 6 | 96 | B.1.2 | 0.000053 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccG | 4 | 96 | B.1.2 | 0.000035 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 49 | 64 | AY.4 | 0.000076 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 10 | 64 | AY.4 | 0.000016 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccG | 5 | 64 | AY.4 | 0.000008 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 46 | 46 | B.1.526 | 0.001081 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 32 | 45 | B.1.1.7 | 0.000029 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccG | 13 | 45 | B.1.1.7 | 0.000012 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 44 | 44 | B.1.596 | 0.003834 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 27 | 27 | AY.41 | 0.007937 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccG | 17 | 27 | B.1.617.2 | 0.000064 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 9 | 27 | B.1.617.2 | 0.000034 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 1 | 27 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 25 | 25 | AY.14 | 0.0022 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 23 | 25 | AY.25 | 0.000138 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccG | 1 | 25 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 1 | 25 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 18 | 18 | B.1.1.306 | 0.007891 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 15 | 16 | B.1.1 | 0.000272 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 1 | 16 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccG | 14 | 14 | AY.100 | 0.000644 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 13 | 14 | AY.44 | 0.000079 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 1 | 14 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 12 | 12 | B.1.1.350 | 0.48 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 12 | 12 | B.1.517 | 0.005124 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 8 | 8 | B.1.369 | 0.002282 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 8 | 8 | B.1.613 | 0.216216 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 8 | 8 | P.1 | 0.000126 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 7 | 7 | B.1.576 | 0.006346 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccG | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 5 | 6 | B.1.177 | 0.000066 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 1 | 6 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 6 | 6 | B.1.451 | 0.04918 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 6 | 6 | B.1.564 | 0.002555 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 4 | 5 | AY.26 | 0.000113 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 1 | 5 | AY.26 | 0.000028 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 5 | 5 | B.1.206 | 0.004078 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 5 | 5 | B.1.580 | 0.020325 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 4 | 4 | B.1.1.432 | 0.005063 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 4 | 4 | B.1.284 | 0.052632 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 3 | 4 | B.1.466.2 | 0.001174 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 1 | 4 | B.1.466.2 | 0.000391 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 4 | 4 | B.1.577 | 0.002749 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 4 | 4 | B.1.595 | 0.001044 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccG | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 2 | 3 | B.1.234 | 0.000264 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 1 | 3 | B.1.234 | 0.000132 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 3 | 3 | B.1.36.22 | 0.003623 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 3 | 3 | B.1.396 | 0.002117 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 3 | 3 | B.1.538 | 0.024194 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 3 | 3 | B.1.565 | 0.002431 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccG | 1 | 2 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 1 | 2 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 1 | 2 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 1 | 2 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 2 | 2 | B.1.1.258 | 0.006515 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 2 | 2 | B.1.1.335 | 0.025974 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 2 | 2 | B.1.139 | 0.001466 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 2 | 2 | B.1.177.65 | 0.001331 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccG | 1 | 2 | B.1.240 | 0.000216 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 1 | 2 | B.1.240 | 0.000216 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 1 | 2 | B.1.351 | 0.00003 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccG | 1 | 2 | B.1.351 | 0.00003 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 2 | 2 | B.1.521 | 0.00995 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 2 | 2 | B.1.546 | 0.007407 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 2 | 2 | B.1.606 | 0.012048 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 1 | 1 | AM.3 | 0.033333 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccG | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccG | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccG | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccG | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 1 | 1 | B.1.1.226 | 0.005814 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 1 | 1 | B.1.1.230 | 0.009174 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 1 | 1 | B.1.1.466 | 0.008696 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccG | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 1 | 1 | B.1.363 | 0.012987 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 1 | 1 | B.1.370 | 0.008 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccG | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 1 | 1 | B.1.424 | 0.008065 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 1 | 1 | B.1.443 | 0.004673 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 1 | 1 | B.1.566 | 0.019231 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 1 | 1 | B.1.589 | 0.007576 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccA | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp12 | 612 | P612P | ccT | ccC | 1 | 1 | P.2 | 0.000187 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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