CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = P323F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12323P323FP4715FnonsynCCtTTt13412134100.99985114407-14409
ORF1ab/nsp12323P323FP4715FnonsynCCTTTC1341220.0001491214407-14409

Details of the mutation P323F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12323P323FCCtTTt1341013412All0.002565
ORF1ab/nsp12323P323FCCTTTC213412All0
ORF1ab/nsp12323P323FCCtTTt87748774B.1.5250.992871
ORF1ab/nsp12323P323FCCtTTt841841B.1.20.007405
ORF1ab/nsp12323P323FCCtTTt641641AY.40.000998
ORF1ab/nsp12323P323FCCtTTt432432B.1.617.20.001627
ORF1ab/nsp12323P323FCCtTTt414414B.1.1.70.000371
ORF1ab/nsp12323P323FCCtTTt408408AY.430.001808
ORF1ab/nsp12323P323FCCtTTt184184AY.30.00183
ORF1ab/nsp12323P323FCCtTTt161161AY.290.00254
ORF1ab/nsp12323P323FCCtTTt103103B.10.000943
ORF1ab/nsp12323P323FCCtTTt102102AY.1110.018681
ORF1ab/nsp12323P323FCCtTTt9191B.1.5861
ORF1ab/nsp12323P323FCCtTTt7878AY.440.000475
ORF1ab/nsp12323P323FCCtTTt6363AY.1030.000391
ORF1ab/nsp12323P323FCCtTTt5656AY.1020.001485
ORF1ab/nsp12323P323FCCtTTt4343B.1.1770.000566
ORF1ab/nsp12323P323FCCtTTt4040AY.1170.003381
ORF1ab/nsp12323P323FCCtTTt3333AY.250.000198
ORF1ab/nsp12323P323FCCtTTt3232B.1.2430.002227
ORF1ab/nsp12323P323FCCtTTt3131B.1.4290.000729
ORF1ab/nsp12323P323FCCtTTt2727AY.230.001883
ORF1ab/nsp12323P323FCCtTTt2727AY.260.000764
ORF1ab/nsp12323P323FCCtTTt2727B.1.10.00049
ORF1ab/nsp12323P323FCCtTTt2626AY.470.000809
ORF1ab/nsp12323P323FCCtTTt2626B.1.2400.005605
ORF1ab/nsp12323P323FCCtTTt2424AY.390.000593
ORF1ab/nsp12323P323FCCtTTt2424B.1.3200.029888
ORF1ab/nsp12323P323FCCtTTt2323B.1.1.3170.009469
ORF1ab/nsp12323P323FCCtTTt2222P.10.000347
ORF1ab/nsp12323P323FCCtTTt2121AY.4.20.000455
ORF1ab/nsp12323P323FCCtTTt2121AY.460.002186
ORF1ab/nsp12323P323FCCtTTt1919AY.200.000738
ORF1ab/nsp12323P323FCCtTTt1919AY.34.10.009689
ORF1ab/nsp12323P323FCCtTTt1818B.1.6210.001593
ORF1ab/nsp12323P323FCCtTTt1616AY.3.10.001364
ORF1ab/nsp12323P323FCCtTTt1616AY.50.00033
ORF1ab/nsp12323P323FCCtTTt1515B.1.177.810.00284
ORF1ab/nsp12323P323FCCtTTt1515B.1.617.10.001934
ORF1ab/nsp12323P323FCCtTTt1414AY.46.40.002303
ORF1ab/nsp12323P323FCCtTTt1414B.1.3510.000416
ORF1ab/nsp12323P323FCCtTTt1414B.1.5960.00122
ORF1ab/nsp12323P323FCCtTTt1212B.1.1470.00907
ORF1ab/nsp12323P323FCCtTTt1010AY.130.00161
ORF1ab/nsp12323P323FCCtTTt1010B.1.36.180.004202
ORF1ab/nsp12323P323FCCtTTt99AY.360.001334
ORF1ab/nsp12323P323FCCtTTt99AY.5.40.00249
ORF1ab/nsp12323P323FCCtTTt99AY.520.007329
ORF1ab/nsp12323P323FCCtTTt99B.1.360.001313
ORF1ab/nsp12323P323FCCtTTt88AY.98.10.000387
ORF1ab/nsp12323P323FCCtTTt88B.1.1600.00025
ORF1ab/nsp12323P323FCCtTTt88B.1.36.10.009122
ORF1ab/nsp12323P323FCCtTTt88B.1.4270.000404
ORF1ab/nsp12323P323FCCtTTt570.277778
ORF1ab/nsp12323P323FCCTTTC270.111111
ORF1ab/nsp12323P323FCCtTTt77AY.120.002212
ORF1ab/nsp12323P323FCCtTTt77AY.1200.00026
ORF1ab/nsp12323P323FCCtTTt77AY.330.000467
ORF1ab/nsp12323P323FCCtTTt77AY.4.50.000752
ORF1ab/nsp12323P323FCCtTTt77B.1.1.2220.001428
ORF1ab/nsp12323P323FCCtTTt77B.1.5260.000165
ORF1ab/nsp12323P323FCCtTTt66AY.1000.000276
ORF1ab/nsp12323P323FCCtTTt66AY.1190.000212
ORF1ab/nsp12323P323FCCtTTt66AY.850.002563
ORF1ab/nsp12323P323FCCtTTt66AY.980.000474
ORF1ab/nsp12323P323FCCtTTt66AY.99.20.000553
ORF1ab/nsp12323P323FCCtTTt66B.1.1.2440.092308
ORF1ab/nsp12323P323FCCtTTt66B.1.177.210.000459
ORF1ab/nsp12323P323FCCtTTt66B.1.2580.000399
ORF1ab/nsp12323P323FCCtTTt66B.1.36.290.003104
ORF1ab/nsp12323P323FCCtTTt66B.1.3690.001711
ORF1ab/nsp12323P323FCCtTTt66B.1.4700.008427
ORF1ab/nsp12323P323FCCtTTt66B.1.4990.006303
ORF1ab/nsp12323P323FCCtTTt66P.1.160.002245
ORF1ab/nsp12323P323FCCtTTt55AY.1130.000712
ORF1ab/nsp12323P323FCCtTTt55AY.1160.001434
ORF1ab/nsp12323P323FCCtTTt55AY.1210.000677
ORF1ab/nsp12323P323FCCtTTt55AY.270.000324
ORF1ab/nsp12323P323FCCtTTt55AY.340.000485
ORF1ab/nsp12323P323FCCtTTt55AY.370.00158
ORF1ab/nsp12323P323FCCtTTt55AY.5.30.001687
ORF1ab/nsp12323P323FCCtTTt55AY.9.20.000184
ORF1ab/nsp12323P323FCCtTTt55B.1.1.5190.000199
ORF1ab/nsp12323P323FCCtTTt55C.370.00058
ORF1ab/nsp12323P323FCCtTTt44AY.1180.000251
ORF1ab/nsp12323P323FCCtTTt44AY.420.000161
ORF1ab/nsp12323P323FCCtTTt44AY.740.000463
ORF1ab/nsp12323P323FCCtTTt44AY.950.003044
ORF1ab/nsp12323P323FCCtTTt44B.1.1.3720.002755
ORF1ab/nsp12323P323FCCtTTt44B.1.3110.001098
ORF1ab/nsp12323P323FCCtTTt44B.1.5950.001044
ORF1ab/nsp12323P323FCCtTTt44P.1.140.000191
ORF1ab/nsp12323P323FCCtTTt33AY.100.00159
ORF1ab/nsp12323P323FCCtTTt33AY.29.10.000662
ORF1ab/nsp12323P323FCCtTTt33AY.39.10.000119
ORF1ab/nsp12323P323FCCtTTt33AY.570.001969
ORF1ab/nsp12323P323FCCtTTt33AY.60.000123
ORF1ab/nsp12323P323FCCtTTt33AY.840.001312
ORF1ab/nsp12323P323FCCtTTt33AY.920.000862
ORF1ab/nsp12323P323FCCtTTt33B.1.1.3010.003538
ORF1ab/nsp12323P323FCCtTTt33B.1.177.600.000655
ORF1ab/nsp12323P323FCCtTTt33B.1.595.40.021898
ORF1ab/nsp12323P323FCCtTTt33D.50.014925
ORF1ab/nsp12323P323FCCtTTt33P.1.100.000808
ORF1ab/nsp12323P323FCCtTTt33P.1.70.000958
ORF1ab/nsp12323P323FCCtTTt22AY.1090.001479
ORF1ab/nsp12323P323FCCtTTt22AY.300.000791
ORF1ab/nsp12323P323FCCtTTt22AY.350.000466
ORF1ab/nsp12323P323FCCtTTt22AY.4.2.10.000298
ORF1ab/nsp12323P323FCCtTTt22AY.480.00093
ORF1ab/nsp12323P323FCCtTTt22AY.540.000191
ORF1ab/nsp12323P323FCCtTTt22AY.700.000417
ORF1ab/nsp12323P323FCCtTTt22AY.790.002421
ORF1ab/nsp12323P323FCCtTTt22AY.90.000135
ORF1ab/nsp12323P323FCCtTTt22AY.900.001369
ORF1ab/nsp12323P323FCCtTTt22B.1.1.2070.002364
ORF1ab/nsp12323P323FCCtTTt22B.1.1.2650.006309
ORF1ab/nsp12323P323FCCtTTt22B.1.1.2690.002706
ORF1ab/nsp12323P323FCCtTTt22B.1.1.280.000622
ORF1ab/nsp12323P323FCCtTTt22B.1.1.3670.111111
ORF1ab/nsp12323P323FCCtTTt22B.1.1.5230.003125
ORF1ab/nsp12323P323FCCtTTt22B.1.177.120.000303
ORF1ab/nsp12323P323FCCtTTt22B.1.177.730.001133
ORF1ab/nsp12323P323FCCtTTt22B.1.6020.013072
ORF1ab/nsp12323P323FCCtTTt22P.1.170.000324
ORF1ab/nsp12323P323FCCtTTt22P.1.60.003891
ORF1ab/nsp12323P323FCCtTTt22P.20.000373
ORF1ab/nsp12323P323FCCtTTt11AY.1050.000643
ORF1ab/nsp12323P323FCCtTTt11AY.1140.000231
ORF1ab/nsp12323P323FCCtTTt11AY.120.2.10.000498
ORF1ab/nsp12323P323FCCtTTt11AY.140.000088
ORF1ab/nsp12323P323FCCtTTt11AY.210.001898
ORF1ab/nsp12323P323FCCtTTt11AY.450.000122
ORF1ab/nsp12323P323FCCtTTt11AY.46.20.000635
ORF1ab/nsp12323P323FCCtTTt11AY.46.60.000072
ORF1ab/nsp12323P323FCCtTTt11AY.670.000464
ORF1ab/nsp12323P323FCCtTTt11AY.680.000274
ORF1ab/nsp12323P323FCCtTTt11AY.690.000187
ORF1ab/nsp12323P323FCCtTTt11AY.710.000475
ORF1ab/nsp12323P323FCCtTTt11AY.720.001361
ORF1ab/nsp12323P323FCCtTTt11AY.770.001127
ORF1ab/nsp12323P323FCCtTTt11AY.80.000606
ORF1ab/nsp12323P323FCCtTTt11AY.820.001357
ORF1ab/nsp12323P323FCCtTTt11AY.9.2.10.001976
ORF1ab/nsp12323P323FCCtTTt11AY.940.000443
ORF1ab/nsp12323P323FCCtTTt11AY.960.002075
ORF1ab/nsp12323P323FCCtTTt11AZ.20.000821
ORF1ab/nsp12323P323FCCtTTt11B.1.1.10.000327
ORF1ab/nsp12323P323FCCtTTt11B.1.1.1360.021277
ORF1ab/nsp12323P323FCCtTTt11B.1.1.2140.000055
ORF1ab/nsp12323P323FCCtTTt11B.1.1.2210.010101
ORF1ab/nsp12323P323FCCtTTt11B.1.1.2370.005405
ORF1ab/nsp12323P323FCCtTTt11B.1.1.2770.000759
ORF1ab/nsp12323P323FCCtTTt11B.1.1.2840.000107
ORF1ab/nsp12323P323FCCtTTt11B.1.1.2940.001266
ORF1ab/nsp12323P323FCCtTTt11B.1.1.3180.000302
ORF1ab/nsp12323P323FCCtTTt11B.1.1.3490.010309
ORF1ab/nsp12323P323FCCtTTt11B.1.1.4110.014706
ORF1ab/nsp12323P323FCCtTTt11B.1.1.4160.000905
ORF1ab/nsp12323P323FCCtTTt11B.1.1.4480.002033
ORF1ab/nsp12323P323FCCtTTt11B.1.1280.000635
ORF1ab/nsp12323P323FCCtTTt11B.1.1310.008772
ORF1ab/nsp12323P323FCCtTTt11B.1.160.150.00495
ORF1ab/nsp12323P323FCCtTTt11B.1.160.320.004292
ORF1ab/nsp12323P323FCCtTTt11B.1.177.70.000165
ORF1ab/nsp12323P323FCCtTTt11B.1.177.820.000477
ORF1ab/nsp12323P323FCCtTTt11B.1.2140.003663
ORF1ab/nsp12323P323FCCtTTt11B.1.2210.000071
ORF1ab/nsp12323P323FCCtTTt11B.1.2340.000132
ORF1ab/nsp12323P323FCCtTTt11B.1.2410.000812
ORF1ab/nsp12323P323FCCtTTt11B.1.258.110.000396
ORF1ab/nsp12323P323FCCtTTt11B.1.3460.001311
ORF1ab/nsp12323P323FCCtTTt11B.1.351.20.000303
ORF1ab/nsp12323P323FCCtTTt11B.1.36.160.001425
ORF1ab/nsp12323P323FCCtTTt11B.1.36.270.000763
ORF1ab/nsp12323P323FCCtTTt11B.1.36.310.001751
ORF1ab/nsp12323P323FCCtTTt11B.1.3610.001289
ORF1ab/nsp12323P323FCCtTTt11B.1.3670.000792
ORF1ab/nsp12323P323FCCtTTt11B.1.3890.001002
ORF1ab/nsp12323P323FCCtTTt11B.1.4000.000429
ORF1ab/nsp12323P323FCCtTTt11B.1.4090.000781
ORF1ab/nsp12323P323FCCtTTt11B.1.438.10.000107
ORF1ab/nsp12323P323FCCtTTt11B.1.4510.008197
ORF1ab/nsp12323P323FCCtTTt11B.1.4560.003268
ORF1ab/nsp12323P323FCCtTTt11B.1.5090.000866
ORF1ab/nsp12323P323FCCtTTt11B.1.5710.009709
ORF1ab/nsp12323P323FCCtTTt11B.1.5820.000491
ORF1ab/nsp12323P323FCCtTTt11B.1.6250.002353
ORF1ab/nsp12323P323FCCtTTt11B.1.6370.000073
ORF1ab/nsp12323P323FCCtTTt11Q.10.000126
ORF1ab/nsp12323P323FCCtTTt11Q.40.000455
ORF1ab/nsp12323P323FCCtTTt11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.