CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = P169S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12169P169SP4561SnonsynCcaTca112811260.99822713945-13947
ORF1ab/nsp12169P169SP4561SnonsynCcATcC112810.00088652513945-13947
ORF1ab/nsp12169P169SP4561SnonsynCcATcG112810.00088652513945-13947

Details of the mutation P169S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12169P169SCcaTca11261128All0.000215
ORF1ab/nsp12169P169SCcATcC11128All0
ORF1ab/nsp12169P169SCcATcG11128All0
ORF1ab/nsp12169P169SCcaTca245245AY.50.005059
ORF1ab/nsp12169P169SCcaTca155155B.1.617.20.000584
ORF1ab/nsp12169P169SCcaTca125125AY.40.000195
ORF1ab/nsp12169P169SCcaTca7474B.1.1.70.000066
ORF1ab/nsp12169P169SCcaTca5151AY.200.001982
ORF1ab/nsp12169P169SCcaTca4545XA1
ORF1ab/nsp12169P169SCcaTca4242AY.430.000186
ORF1ab/nsp12169P169SCcaTca3232B.1.2210.002273
ORF1ab/nsp12169P169SCcaTca3232B.1.2390.039072
ORF1ab/nsp12169P169SCcaTca2727B.1.177.180.031323
ORF1ab/nsp12169P169SCcaTca2323B.1.1.2140.001276
ORF1ab/nsp12169P169SCcaTca2222AY.440.000134
ORF1ab/nsp12169P169SCcaTca2020AY.46.50.003968
ORF1ab/nsp12169P169SCcaTca1515B.1.20.000132
ORF1ab/nsp12169P169SCcaTca1414B.10.000128
ORF1ab/nsp12169P169SCcaTca1313AY.390.000321
ORF1ab/nsp12169P169SCcaTca1212AY.1020.000318
ORF1ab/nsp12169P169SCcaTca99AY.340.000873
ORF1ab/nsp12169P169SCcaTca99AY.7.20.005034
ORF1ab/nsp12169P169SCcaTca88AY.250.000048
ORF1ab/nsp12169P169SCcaTca88B.1.5250.000905
ORF1ab/nsp12169P169SCcaTca77B.1.1770.000092
ORF1ab/nsp12169P169SCcaTca460.222222
ORF1ab/nsp12169P169SCcATcC160.055556
ORF1ab/nsp12169P169SCcATcG160.055556
ORF1ab/nsp12169P169SCcaTca55AY.1030.000031
ORF1ab/nsp12169P169SCcaTca55AY.1060.001674
ORF1ab/nsp12169P169SCcaTca55B.1.1.2220.00102
ORF1ab/nsp12169P169SCcaTca55B.1.1.3980.016129
ORF1ab/nsp12169P169SCcaTca55B.1.4290.000118
ORF1ab/nsp12169P169SCcaTca44AY.1000.000184
ORF1ab/nsp12169P169SCcaTca44AY.240.001724
ORF1ab/nsp12169P169SCcaTca44AY.360.000593
ORF1ab/nsp12169P169SCcaTca44B.1.90.024691
ORF1ab/nsp12169P169SCcaTca44P.1.160.001496
ORF1ab/nsp12169P169SCcaTca33AY.460.000312
ORF1ab/nsp12169P169SCcaTca33AY.980.000237
ORF1ab/nsp12169P169SCcaTca33B0.000383
ORF1ab/nsp12169P169SCcaTca33B.1.10.000054
ORF1ab/nsp12169P169SCcaTca33B.1.1.5190.000119
ORF1ab/nsp12169P169SCcaTca33B.1.258.170.000312
ORF1ab/nsp12169P169SCcaTca33B.1.5260.000071
ORF1ab/nsp12169P169SCcaTca33B.1.6210.000266
ORF1ab/nsp12169P169SCcaTca22AY.260.000057
ORF1ab/nsp12169P169SCcaTca22AY.5.40.000553
ORF1ab/nsp12169P169SCcaTca22AY.60.000082
ORF1ab/nsp12169P169SCcaTca22AY.950.001522
ORF1ab/nsp12169P169SCcaTca22B.1.1.470.010695
ORF1ab/nsp12169P169SCcaTca22B.1.2430.000139
ORF1ab/nsp12169P169SCcaTca22B.1.360.000292
ORF1ab/nsp12169P169SCcaTca22B.1.5970.009259
ORF1ab/nsp12169P169SCcaTca22P.1.100.000539
ORF1ab/nsp12169P169SCcaTca22Q.80.00033
ORF1ab/nsp12169P169SCcaTca11A0.000387
ORF1ab/nsp12169P169SCcaTca11A.50.001923
ORF1ab/nsp12169P169SCcaTca11AY.1140.000231
ORF1ab/nsp12169P169SCcaTca11AY.1160.000287
ORF1ab/nsp12169P169SCcaTca11AY.1210.000135
ORF1ab/nsp12169P169SCcaTca11AY.290.000016
ORF1ab/nsp12169P169SCcaTca11AY.30.00001
ORF1ab/nsp12169P169SCcaTca11AY.300.000396
ORF1ab/nsp12169P169SCcaTca11AY.330.000067
ORF1ab/nsp12169P169SCcaTca11AY.370.000316
ORF1ab/nsp12169P169SCcaTca11AY.450.000122
ORF1ab/nsp12169P169SCcaTca11AY.46.40.000165
ORF1ab/nsp12169P169SCcaTca11AY.590.00053
ORF1ab/nsp12169P169SCcaTca11AY.750.000056
ORF1ab/nsp12169P169SCcaTca11AY.80.000606
ORF1ab/nsp12169P169SCcaTca11AY.9.20.000037
ORF1ab/nsp12169P169SCcaTca11B.1.1.1530.001095
ORF1ab/nsp12169P169SCcaTca11B.1.1.2840.000107
ORF1ab/nsp12169P169SCcaTca11B.1.1.3180.000302
ORF1ab/nsp12169P169SCcaTca11B.1.1.3260.001761
ORF1ab/nsp12169P169SCcaTca11B.1.1.330.000421
ORF1ab/nsp12169P169SCcaTca11B.1.1.4340.000349
ORF1ab/nsp12169P169SCcaTca11B.1.177.210.000076
ORF1ab/nsp12169P169SCcaTca11B.1.177.730.000566
ORF1ab/nsp12169P169SCcaTca11B.1.2340.000132
ORF1ab/nsp12169P169SCcaTca11B.1.2410.000812
ORF1ab/nsp12169P169SCcaTca11B.1.3510.00003
ORF1ab/nsp12169P169SCcaTca11B.1.351.30.000876
ORF1ab/nsp12169P169SCcaTca11B.1.36.290.000517
ORF1ab/nsp12169P169SCcaTca11B.1.3670.000792
ORF1ab/nsp12169P169SCcaTca11B.1.3690.000285
ORF1ab/nsp12169P169SCcaTca11B.1.3800.006623
ORF1ab/nsp12169P169SCcaTca11B.1.5240.001406
ORF1ab/nsp12169P169SCcaTca11B.1.5750.000303
ORF1ab/nsp12169P169SCcaTca11B.1.5870.001898
ORF1ab/nsp12169P169SCcaTca11B.1.617.10.000129
ORF1ab/nsp12169P169SCcaTca11B.1.6190.000871
ORF1ab/nsp12169P169SCcaTca11B.4.10.018868
ORF1ab/nsp12169P169SCcaTca11C.10.002392
ORF1ab/nsp12169P169SCcaTca11C.140.004329
ORF1ab/nsp12169P169SCcaTca11C.300.001727
ORF1ab/nsp12169P169SCcaTca11C.370.000116
ORF1ab/nsp12169P169SCcaTca11D.20.000075
ORF1ab/nsp12169P169SCcaTca11P.1.150.000232
ORF1ab/nsp12169P169SCcaTca11Q.30.000145