CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = N628N

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12628N628NN5020NsynaaCaaT3530035300115322-15324

Details of the mutation N628N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12628N628NaaCaaT3530035300All0.006752
ORF1ab/nsp12628N628NaaCaaT1305813058B.1.2210.927547
ORF1ab/nsp12628N628NaaCaaT53545354B.10.04904
ORF1ab/nsp12628N628NaaCaaT19191919B.1.1.70.001718
ORF1ab/nsp12628N628NaaCaaT15821582B.1.214.20.948441
ORF1ab/nsp12628N628NaaCaaT15591559B.1.619.11
ORF1ab/nsp12628N628NaaCaaT13181318B.1.1470.996221
ORF1ab/nsp12628N628NaaCaaT11951195B.1.221.30.995833
ORF1ab/nsp12628N628NaaCaaT11241124B.1.6190.979094
ORF1ab/nsp12628N628NaaCaaT10371037B.1.6200.981079
ORF1ab/nsp12628N628NaaCaaT474474AY.40.000738
ORF1ab/nsp12628N628NaaCaaT446446B.1.2100.950959
ORF1ab/nsp12628N628NaaCaaT391391B.1.3460.512451
ORF1ab/nsp12628N628NaaCaaT344344B.1.221.11
ORF1ab/nsp12628N628NaaCaaT292292B.1.1491
ORF1ab/nsp12628N628NaaCaaT278278AY.1020.007371
ORF1ab/nsp12628N628NaaCaaT246246B.1.221.20.987952
ORF1ab/nsp12628N628NaaCaaT238238B.1.221.40.991667
ORF1ab/nsp12628N628NaaCaaT234234B.1.1460.991525
ORF1ab/nsp12628N628NaaCaaT207207AY.1030.001285
ORF1ab/nsp12628N628NaaCaaT189189B.1.2180.974227
ORF1ab/nsp12628N628NaaCaaT153153AY.430.000678
ORF1ab/nsp12628N628NaaCaaT153153B.1.3510.004548
ORF1ab/nsp12628N628NaaCaaT141141D.20.010581
ORF1ab/nsp12628N628NaaCaaT128128B.1.214.30.914286
ORF1ab/nsp12628N628NaaCaaT128128B.1.36.330.969697
ORF1ab/nsp12628N628NaaCaaT120120B.1.617.20.000452
ORF1ab/nsp12628N628NaaCaaT111111C.36.30.062961
ORF1ab/nsp12628N628NaaCaaT110110B.1.214.41
ORF1ab/nsp12628N628NaaCaaT106106B.1.2191
ORF1ab/nsp12628N628NaaCaaT105105B.1.5650.085089
ORF1ab/nsp12628N628NaaCaaT9292B.1.2201
ORF1ab/nsp12628N628NaaCaaT9090B.1.1511
ORF1ab/nsp12628N628NaaCaaT8787B.1.2140.318681
ORF1ab/nsp12628N628NaaCaaT8686B.1.4290.002023
ORF1ab/nsp12628N628NaaCaaT8585B.531
ORF1ab/nsp12628N628NaaCaaT7474AY.440.00045
ORF1ab/nsp12628N628NaaCaaT6868AY.450.008275
ORF1ab/nsp12628N628NaaCaaT6868B.1.20.000599
ORF1ab/nsp12628N628NaaCaaT6767AY.4.20.001453
ORF1ab/nsp12628N628NaaCaaT6767B.1.2131
ORF1ab/nsp12628N628NaaCaaT6666B.1.1770.000869
ORF1ab/nsp12628N628NaaCaaT6464B.1.830.984615
ORF1ab/nsp12628N628NaaCaaT6262B.1.10.001125
ORF1ab/nsp12628N628NaaCaaT5858B.1.61
ORF1ab/nsp12628N628NaaCaaT5757B.1.2120.95
ORF1ab/nsp12628N628NaaCaaT5656AY.5.40.015495
ORF1ab/nsp12628N628NaaCaaT5252B.1.3690.014832
ORF1ab/nsp12628N628NaaCaaT4848B.1.841
ORF1ab/nsp12628N628NaaCaaT4545B.1.214.10.9
ORF1ab/nsp12628N628NaaCaaT4444AY.390.001087
ORF1ab/nsp12628N628NaaCaaT4242AY.46.40.006909
ORF1ab/nsp12628N628NaaCaaT4242B.1.1781
ORF1ab/nsp12628N628NaaCaaT3838B0.004857
ORF1ab/nsp12628N628NaaCaaT3737B.1.2110.925
ORF1ab/nsp12628N628NaaCaaT3131AY.200.001205
ORF1ab/nsp12628N628NaaCaaT2626B.1.351.30.022787
ORF1ab/nsp12628N628NaaCaaT2424AY.30.000239
ORF1ab/nsp12628N628NaaCaaT2424B.1.3870.96
ORF1ab/nsp12628N628NaaCaaT2424P.20.004479
ORF1ab/nsp12628N628NaaCaaT2323AY.46.60.001661
ORF1ab/nsp12628N628NaaCaaT2323B.1.6210.002036
ORF1ab/nsp12628N628NaaCaaT2323C.370.002669
ORF1ab/nsp12628N628NaaCaaT2323P.1.150.005344
ORF1ab/nsp12628N628NaaCaaT2222B.1.2080.88
ORF1ab/nsp12628N628NaaCaaT2222P.10.000347
ORF1ab/nsp12628N628NaaCaaT2121B.1.1600.000655
ORF1ab/nsp12628N628NaaCaaT2020AZ.20.01642
ORF1ab/nsp12628N628NaaCaaT1919B.1.5960.001656
ORF1ab/nsp12628N628NaaCaaT1818AY.50.000372
ORF1ab/nsp12628N628NaaCaaT1818B.1.3110.004942
ORF1ab/nsp12628N628NaaCaaT1818B.1.5291
ORF1ab/nsp12628N628NaaCaaT1818B.1.5750.005461
ORF1ab/nsp12628N628NaaCaaT1717AY.250.000102
ORF1ab/nsp12628N628NaaCaaT1717B.1.2340.002243
ORF1ab/nsp12628N628NaaCaaT1515Q.10.001895
ORF1ab/nsp12628N628NaaCaaT1414AY.260.000396
ORF1ab/nsp12628N628NaaCaaT1414AY.290.000221
ORF1ab/nsp12628N628NaaCaaT1414B.1.177.340.736842
ORF1ab/nsp12628N628NaaCaaT1414B.1.5260.000329
ORF1ab/nsp12628N628NaaCaaT1111B.1.1.5190.000437
ORF1ab/nsp12628N628NaaCaaT1111B.1.3881
ORF1ab/nsp12628N628NaaCaaT1111B.1.4160.013959
ORF1ab/nsp12628N628NaaCaaT1111B.1.5820.005397
ORF1ab/nsp12628N628NaaCaaT1010AY.1210.001353
ORF1ab/nsp12628N628NaaCaaT1010AY.3.10.000853
ORF1ab/nsp12628N628NaaCaaT1010B.1.2430.000696
ORF1ab/nsp12628N628NaaCaaT1010B.1.621.10.005058
ORF1ab/nsp12628N628NaaCaaT99B.1.1.280.002801
ORF1ab/nsp12628N628NaaCaaT99B.1.2220.015228
ORF1ab/nsp12628N628NaaCaaT99B.1.2400.00194
ORF1ab/nsp12628N628NaaCaaT99B.1.3360.021951
ORF1ab/nsp12628N628NaaCaaT99B.1.6090.004314
ORF1ab/nsp12628N628NaaCaaT88AY.420.000322
ORF1ab/nsp12628N628NaaCaaT88AY.460.000833
ORF1ab/nsp12628N628NaaCaaT88AY.620.003486
ORF1ab/nsp12628N628NaaCaaT88B.1.177.440.004152
ORF1ab/nsp12628N628NaaCaaT88B.1.177.720.027119
ORF1ab/nsp12628N628NaaCaaT77A0.002709
ORF1ab/nsp12628N628NaaCaaT77AE.80.003423
ORF1ab/nsp12628N628NaaCaaT77AY.99.20.000645
ORF1ab/nsp12628N628NaaCaaT77B.1.1.1760.003076
ORF1ab/nsp12628N628NaaCaaT77B.1.1.370.00135
ORF1ab/nsp12628N628NaaCaaT77B.1.160.320.030043
ORF1ab/nsp12628N628NaaCaaT77B.1.177.430.01034
ORF1ab/nsp12628N628NaaCaaT77B.1.2580.000466
ORF1ab/nsp12628N628NaaCaaT77B.1.36.10.007982
ORF1ab/nsp12628N628NaaCaaT66AY.1200.000223
ORF1ab/nsp12628N628NaaCaaT66B.1.177.810.001136
ORF1ab/nsp12628N628NaaCaaT66B.1.4270.000303
ORF1ab/nsp12628N628NaaCaaT66P.1.120.002904
ORF1ab/nsp12628N628NaaCaaT55AY.470.000156
ORF1ab/nsp12628N628NaaCaaT55AY.540.000477
ORF1ab/nsp12628N628NaaCaaT55AY.60.000206
ORF1ab/nsp12628N628NaaCaaT55AY.98.10.000242
ORF1ab/nsp12628N628NaaCaaT55B.1.1.3150.042373
ORF1ab/nsp12628N628NaaCaaT55B.1.1.700.001705
ORF1ab/nsp12628N628NaaCaaT55B.1.2320.002687
ORF1ab/nsp12628N628NaaCaaT55P.1.20.00578
ORF1ab/nsp12628N628NaaCaaT44AY.1190.000141
ORF1ab/nsp12628N628NaaCaaT44AY.610.000419
ORF1ab/nsp12628N628NaaCaaT44AY.740.000463
ORF1ab/nsp12628N628NaaCaaT44B.1.1.2140.000222
ORF1ab/nsp12628N628NaaCaaT44B.1.1.3170.001647
ORF1ab/nsp12628N628NaaCaaT44B.1.1.4090.011331
ORF1ab/nsp12628N628NaaCaaT44B.1.177.860.000734
ORF1ab/nsp12628N628NaaCaaT44B.1.3610.005155
ORF1ab/nsp12628N628NaaCaaT44B.1.4330.01278
ORF1ab/nsp12628N628NaaCaaT44B.1.5740.008602
ORF1ab/nsp12628N628NaaCaaT44P.1.140.000191
ORF1ab/nsp12628N628NaaCaaT33A.210.00831
ORF1ab/nsp12628N628NaaCaaT33AY.1180.000188
ORF1ab/nsp12628N628NaaCaaT33AY.230.000209
ORF1ab/nsp12628N628NaaCaaT33AY.7.20.001678
ORF1ab/nsp12628N628NaaCaaT33AY.750.000168
ORF1ab/nsp12628N628NaaCaaT33AY.9.10.000251
ORF1ab/nsp12628N628NaaCaaT33B.1.1.1620.088235
ORF1ab/nsp12628N628NaaCaaT33B.1.1430.06383
ORF1ab/nsp12628N628NaaCaaT33B.1.177.600.000655
ORF1ab/nsp12628N628NaaCaaT33B.1.177.630.008108
ORF1ab/nsp12628N628NaaCaaT33B.1.177.730.001699
ORF1ab/nsp12628N628NaaCaaT33B.1.36.80.003
ORF1ab/nsp12628N628NaaCaaT33B.1.5760.00272
ORF1ab/nsp12628N628NaaCaaT33N.30.017442
ORF1ab/nsp12628N628NaaCaaT22AY.1110.000366
ORF1ab/nsp12628N628NaaCaaT22AY.1170.000169
ORF1ab/nsp12628N628NaaCaaT22AY.120.000632
ORF1ab/nsp12628N628NaaCaaT22AY.160.000759
ORF1ab/nsp12628N628NaaCaaT22AY.240.000862
ORF1ab/nsp12628N628NaaCaaT22AY.330.000134
ORF1ab/nsp12628N628NaaCaaT22AY.34.10.00102
ORF1ab/nsp12628N628NaaCaaT22AY.350.000466
ORF1ab/nsp12628N628NaaCaaT22AY.480.00093
ORF1ab/nsp12628N628NaaCaaT22AY.590.001059
ORF1ab/nsp12628N628NaaCaaT22AY.770.002255
ORF1ab/nsp12628N628NaaCaaT22AY.80.001212
ORF1ab/nsp12628N628NaaCaaT22AY.950.001522
ORF1ab/nsp12628N628NaaCaaT22B.1.1.2160.001781
ORF1ab/nsp12628N628NaaCaaT22B.1.1.250.001137
ORF1ab/nsp12628N628NaaCaaT22B.1.1.3980.006452
ORF1ab/nsp12628N628NaaCaaT22B.1.1.4160.00181
ORF1ab/nsp12628N628NaaCaaT22B.1.1040.00738
ORF1ab/nsp12628N628NaaCaaT22B.1.1570.00597
ORF1ab/nsp12628N628NaaCaaT22B.1.177.100.001756
ORF1ab/nsp12628N628NaaCaaT22B.1.177.70.00033
ORF1ab/nsp12628N628NaaCaaT22B.1.177.770.001452
ORF1ab/nsp12628N628NaaCaaT22B.1.177.790.004684
ORF1ab/nsp12628N628NaaCaaT22B.1.258.110.000793
ORF1ab/nsp12628N628NaaCaaT22B.1.2980.004228
ORF1ab/nsp12628N628NaaCaaT22B.1.3490.00143
ORF1ab/nsp12628N628NaaCaaT22B.1.360.000292
ORF1ab/nsp12628N628NaaCaaT22B.1.3780.013699
ORF1ab/nsp12628N628NaaCaaT22B.1.390.007812
ORF1ab/nsp12628N628NaaCaaT22B.1.4080.00738
ORF1ab/nsp12628N628NaaCaaT22B.1.4590.008163
ORF1ab/nsp12628N628NaaCaaT22B.1.466.20.000782
ORF1ab/nsp12628N628NaaCaaT22B.1.4700.002809
ORF1ab/nsp12628N628NaaCaaT22B.1.5600.009259
ORF1ab/nsp12628N628NaaCaaT22B.1.5610.000794
ORF1ab/nsp12628N628NaaCaaT22B.1.80.003945
ORF1ab/nsp12628N628NaaCaaT22B.60.00182
ORF1ab/nsp12628N628NaaCaaT22C.350.001548
ORF1ab/nsp12628N628NaaCaaT22Q.80.00033
ORF1ab/nsp12628N628NaaCaaT11A.10.000282
ORF1ab/nsp12628N628NaaCaaT11AP.10.001502
ORF1ab/nsp12628N628NaaCaaT11AY.10.000396
ORF1ab/nsp12628N628NaaCaaT11AY.1080.001103
ORF1ab/nsp12628N628NaaCaaT11AY.1130.000142
ORF1ab/nsp12628N628NaaCaaT11AY.130.000161
ORF1ab/nsp12628N628NaaCaaT11AY.190.00114
ORF1ab/nsp12628N628NaaCaaT11AY.20.000356
ORF1ab/nsp12628N628NaaCaaT11AY.280.00189
ORF1ab/nsp12628N628NaaCaaT11AY.370.000316
ORF1ab/nsp12628N628NaaCaaT11AY.5.30.000337
ORF1ab/nsp12628N628NaaCaaT11AY.530.000288
ORF1ab/nsp12628N628NaaCaaT11AY.550.000917
ORF1ab/nsp12628N628NaaCaaT11AY.690.000187
ORF1ab/nsp12628N628NaaCaaT11AY.810.001992
ORF1ab/nsp12628N628NaaCaaT11AY.840.000437
ORF1ab/nsp12628N628NaaCaaT11AY.90.000068
ORF1ab/nsp12628N628NaaCaaT11AY.9.20.000037
ORF1ab/nsp12628N628NaaCaaT11AY.910.00073
ORF1ab/nsp12628N628NaaCaaT11AY.920.000287
ORF1ab/nsp12628N628NaaCaaT11AY.940.000443
ORF1ab/nsp12628N628NaaCaaT11B.1.1.2220.000204
ORF1ab/nsp12628N628NaaCaaT11B.1.1.2860.002899
ORF1ab/nsp12628N628NaaCaaT11B.1.1.2940.001266
ORF1ab/nsp12628N628NaaCaaT11B.1.1.3060.000438
ORF1ab/nsp12628N628NaaCaaT11B.1.1.3110.000358
ORF1ab/nsp12628N628NaaCaaT11B.1.1.3180.000302
ORF1ab/nsp12628N628NaaCaaT11B.1.1.3260.001761
ORF1ab/nsp12628N628NaaCaaT11B.1.1.3720.000689
ORF1ab/nsp12628N628NaaCaaT11B.1.1.390.00051
ORF1ab/nsp12628N628NaaCaaT11B.1.1.4480.002033
ORF1ab/nsp12628N628NaaCaaT11B.1.1.4620.008621
ORF1ab/nsp12628N628NaaCaaT11B.1.1.5280.004808
ORF1ab/nsp12628N628NaaCaaT11B.1.1.80.003584
ORF1ab/nsp12628N628NaaCaaT11B.1.1.830.00271
ORF1ab/nsp12628N628NaaCaaT11B.1.1030.019231
ORF1ab/nsp12628N628NaaCaaT11B.1.1050.009615
ORF1ab/nsp12628N628NaaCaaT11B.1.1150.021739
ORF1ab/nsp12628N628NaaCaaT11B.1.1270.002198
ORF1ab/nsp12628N628NaaCaaT11B.1.1390.000733
ORF1ab/nsp12628N628NaaCaaT11B.1.160.120.00641
ORF1ab/nsp12628N628NaaCaaT11B.1.1690.014925
ORF1ab/nsp12628N628NaaCaaT11B.1.1700.00431
ORF1ab/nsp12628N628NaaCaaT11B.1.177.330.001645
ORF1ab/nsp12628N628NaaCaaT11B.1.177.380.010417
ORF1ab/nsp12628N628NaaCaaT11B.1.177.40.000211
ORF1ab/nsp12628N628NaaCaaT11B.1.177.420.000894
ORF1ab/nsp12628N628NaaCaaT11B.1.177.650.000665
ORF1ab/nsp12628N628NaaCaaT11B.1.177.760.002494
ORF1ab/nsp12628N628NaaCaaT11B.1.177.840.006667
ORF1ab/nsp12628N628NaaCaaT11B.1.177.870.000728
ORF1ab/nsp12628N628NaaCaaT11B.1.1840.058824
ORF1ab/nsp12628N628NaaCaaT11B.1.1890.004292
ORF1ab/nsp12628N628NaaCaaT11B.1.230.006061
ORF1ab/nsp12628N628NaaCaaT11B.1.2360.002053
ORF1ab/nsp12628N628NaaCaaT11B.1.2370.004975
ORF1ab/nsp12628N628NaaCaaT11B.1.2390.001221
ORF1ab/nsp12628N628NaaCaaT11B.1.2410.000812
ORF1ab/nsp12628N628NaaCaaT11B.1.2470.014925
ORF1ab/nsp12628N628NaaCaaT11B.1.2520.006623
ORF1ab/nsp12628N628NaaCaaT11B.1.258.170.000104
ORF1ab/nsp12628N628NaaCaaT11B.1.2670.018519
ORF1ab/nsp12628N628NaaCaaT11B.1.3230.020833
ORF1ab/nsp12628N628NaaCaaT11B.1.3260.007576
ORF1ab/nsp12628N628NaaCaaT11B.1.3320.003497
ORF1ab/nsp12628N628NaaCaaT11B.1.3370.005587
ORF1ab/nsp12628N628NaaCaaT11B.1.3500.002933
ORF1ab/nsp12628N628NaaCaaT11B.1.36.100.004785
ORF1ab/nsp12628N628NaaCaaT11B.1.36.360.000602
ORF1ab/nsp12628N628NaaCaaT11B.1.36.390.002217
ORF1ab/nsp12628N628NaaCaaT11B.1.3660.004878
ORF1ab/nsp12628N628NaaCaaT11B.1.3670.000792
ORF1ab/nsp12628N628NaaCaaT11B.1.3910.001127
ORF1ab/nsp12628N628NaaCaaT11B.1.3990.001934
ORF1ab/nsp12628N628NaaCaaT11B.1.4000.000429
ORF1ab/nsp12628N628NaaCaaT11B.1.4060.006061
ORF1ab/nsp12628N628NaaCaaT11B.1.4170.028571
ORF1ab/nsp12628N628NaaCaaT11B.1.4210.007463
ORF1ab/nsp12628N628NaaCaaT11B.1.4280.00102
ORF1ab/nsp12628N628NaaCaaT11B.1.4430.004673
ORF1ab/nsp12628N628NaaCaaT11B.1.4530.003236
ORF1ab/nsp12628N628NaaCaaT11B.1.5030.002488
ORF1ab/nsp12628N628NaaCaaT11B.1.5060.02381
ORF1ab/nsp12628N628NaaCaaT11B.1.5070.011236
ORF1ab/nsp12628N628NaaCaaT11B.1.5240.001406
ORF1ab/nsp12628N628NaaCaaT11B.1.5250.000113
ORF1ab/nsp12628N628NaaCaaT11B.1.5510.00129
ORF1ab/nsp12628N628NaaCaaT11B.1.5660.019231
ORF1ab/nsp12628N628NaaCaaT11B.1.5770.000687
ORF1ab/nsp12628N628NaaCaaT11B.1.5930.01087
ORF1ab/nsp12628N628NaaCaaT11B.1.5950.000261
ORF1ab/nsp12628N628NaaCaaT11B.1.6000.005848
ORF1ab/nsp12628N628NaaCaaT11B.1.6050.005952
ORF1ab/nsp12628N628NaaCaaT11B.1.6270.00202
ORF1ab/nsp12628N628NaaCaaT11B.1.6370.000073
ORF1ab/nsp12628N628NaaCaaT11B.1.690.035714
ORF1ab/nsp12628N628NaaCaaT11B.1.810.021277
ORF1ab/nsp12628N628NaaCaaT11B.1.940.027027
ORF1ab/nsp12628N628NaaCaaT11B.290.003509
ORF1ab/nsp12628N628NaaCaaT11B.30.000831
ORF1ab/nsp12628N628NaaCaaT11P.1.100.000269
ORF1ab/nsp12628N628NaaCaaT11P.1.170.000162
ORF1ab/nsp12628N628NaaCaaT11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.