CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 758 | L758L | L5150L | syn | ctC | ctT | 4309 | 4190 | 0.972383 | 15712-15714 |
ORF1ab/nsp12 | 758 | L758L | L5150L | syn | ctC | ctA | 4309 | 106 | 0.0245997 | 15712-15714 |
ORF1ab/nsp12 | 758 | L758L | L5150L | syn | ctC | ctG | 4309 | 13 | 0.00301694 | 15712-15714 |
Details of the mutation L758L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 4190 | 4309 | All | 0.000801 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 106 | 4309 | All | 0.00002 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctG | 13 | 4309 | All | 0.000002 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 727 | 750 | B.1.1.7 | 0.000651 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 23 | 750 | B.1.1.7 | 0.000021 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 499 | 513 | AY.4 | 0.000777 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 12 | 513 | AY.4 | 0.000019 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctG | 2 | 513 | AY.4 | 0.000003 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 508 | 508 | P.1.6 | 0.988327 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 190 | 195 | B.1.617.2 | 0.000715 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 5 | 195 | B.1.617.2 | 0.000019 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 170 | 178 | B.1.2 | 0.001497 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctG | 8 | 178 | B.1.2 | 0.00007 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 174 | 174 | AY.4.2 | 0.003774 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 146 | 148 | AY.44 | 0.000889 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 2 | 148 | AY.44 | 0.000012 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 127 | 131 | AY.103 | 0.000789 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 4 | 131 | AY.103 | 0.000025 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 109 | 125 | AY.43 | 0.000483 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 16 | 125 | AY.43 | 0.000071 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 87 | 93 | B.1 | 0.000797 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 5 | 93 | B.1 | 0.000046 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctG | 1 | 93 | B.1 | 0.000009 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 89 | 89 | AY.121 | 0.012043 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 79 | 79 | AY.23 | 0.00551 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 74 | 77 | P.1 | 0.001166 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 3 | 77 | P.1 | 0.000047 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 71 | 71 | B.1.177.73 | 0.040204 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 62 | 62 | B.1.351 | 0.001843 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 47 | 47 | AY.3 | 0.000467 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 37 | 39 | AY.102 | 0.000981 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 1 | 39 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctG | 1 | 39 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 37 | 37 | AY.27 | 0.002395 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 34 | 34 | AY.26 | 0.000963 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 33 | 33 | AY.33 | 0.002204 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 29 | 29 | B.1.177 | 0.000382 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 28 | 28 | B.1.258 | 0.001863 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 25 | 25 | B.1.1.374 | 0.059382 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 23 | 23 | AY.119 | 0.000812 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 23 | 23 | AY.2 | 0.008191 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 21 | 22 | AY.25 | 0.000126 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 1 | 22 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 22 | 22 | B.1.453 | 0.071197 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 21 | 21 | D.2 | 0.001576 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 15 | 19 | B.1.1 | 0.000272 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 4 | 19 | B.1.1 | 0.000073 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 18 | 18 | B.1.1.37 | 0.003472 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 18 | 18 | B.1.526 | 0.000423 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 17 | 18 | B.1.596 | 0.001481 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 1 | 18 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 17 | 17 | R.1 | 0.00153 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 16 | 16 | AY.29 | 0.000252 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 16 | 16 | B.1.427 | 0.000808 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 16 | 16 | B.1.525 | 0.001811 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 9 | 15 | AY.20 | 0.00035 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 6 | 15 | AY.20 | 0.000233 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 15 | 15 | B.1.575 | 0.004551 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 14 | 14 | B.1.214.3 | 0.1 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 14 | 14 | B.1.36 | 0.002043 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 13 | 13 | AY.120 | 0.000483 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 12 | 12 | B.1.564 | 0.005111 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 10 | 11 | AY.39 | 0.000247 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 1 | 11 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 10 | 10 | AY.6 | 0.000411 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 10 | 10 | B.1.1.369 | 0.004462 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 10 | 10 | B.1.243 | 0.000696 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 10 | 10 | B.1.429 | 0.000235 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 8 | 10 | C.37 | 0.000929 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 2 | 10 | C.37 | 0.000232 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 9 | 9 | AE.8 | 0.004401 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 9 | 9 | AY.55 | 0.008257 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 8 | 9 | B.1.177.81 | 0.001515 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 1 | 9 | B.1.177.81 | 0.000189 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 9 | 9 | B.1.221.4 | 0.0375 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 9 | 9 | B.1.311 | 0.002471 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 9 | 9 | Q.8 | 0.001484 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 8 | 8 | AY.109 | 0.005917 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 8 | 8 | AY.118 | 0.000501 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 7 | 8 | AY.14 | 0.000616 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 1 | 8 | AY.14 | 0.000088 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 8 | 8 | AY.9 | 0.000541 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 8 | 8 | B.1.218 | 0.041237 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 5 | 7 | 0.277778 | |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 2 | 7 | 0.111111 | |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 7 | 7 | AY.45 | 0.000852 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 7 | 7 | AY.75 | 0.000392 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 7 | 7 | B.1.1.1 | 0.002287 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 7 | 7 | B.1.409 | 0.005469 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 7 | 7 | B.1.456 | 0.022876 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 7 | 7 | B.1.628 | 0.002467 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 6 | 6 | AY.84 | 0.002625 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 6 | 6 | B | 0.000767 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 5 | 5 | AY.11 | 0.006693 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 4 | 5 | AY.117 | 0.000338 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 1 | 5 | AY.117 | 0.000085 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 4 | 5 | AY.3.1 | 0.000341 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 1 | 5 | AY.3.1 | 0.000085 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 5 | 5 | B.1.1.176 | 0.002197 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 5 | 5 | B.1.517 | 0.002135 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 4 | 4 | AY.29.1 | 0.000882 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 3 | 4 | AY.36 | 0.000445 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 1 | 4 | AY.36 | 0.000148 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 3 | 4 | AY.54 | 0.000286 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 1 | 4 | AY.54 | 0.000095 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 4 | 4 | B.1.1.25 | 0.002274 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 3 | 4 | B.1.1.519 | 0.000119 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 1 | 4 | B.1.1.519 | 0.00004 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 4 | 4 | B.1.258.17 | 0.000416 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 4 | 4 | B.1.503 | 0.00995 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 3 | AY.113 | 0.000285 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 1 | 3 | AY.113 | 0.000142 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 3 | 3 | AY.24 | 0.001293 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 3 | 3 | AY.78 | 0.004622 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 3 | AY.9.2 | 0.000073 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 1 | 3 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 3 | 3 | AY.91 | 0.002191 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 3 | 3 | AY.93 | 0.000819 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 3 | 3 | AY.99.1 | 0.004658 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 3 | 3 | B.1.404 | 0.003906 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 3 | 3 | C.11 | 0.031915 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 3 | 3 | C.34 | 0.111111 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 2 | AY.85 | 0.000427 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 1 | 2 | AY.85 | 0.000427 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 1 | 2 | AY.98 | 0.000079 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 2 | AY.98 | 0.000079 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | B.1.1.141 | 0.004024 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | B.1.1.207 | 0.002364 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | B.1.1.316 | 0.00185 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | B.1.1.417 | 0.005405 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | B.1.1.461 | 0.024096 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | B.1.146 | 0.008475 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | B.1.177.72 | 0.00678 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | B.1.239 | 0.002442 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | B.1.465 | 0.007605 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | B.1.466 | 0.046512 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | P.1.11 | 0.020408 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 2 | 2 | V.2 | 0.064516 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | AE.7 | 0.083333 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctG | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.1.280 | 0.003086 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.1.288 | 0.001916 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 1 | 1 | B.1.1.335 | 0.012987 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.1.370 | 0.012658 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.1.404 | 0.015873 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.177.80 | 0.001912 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.380 | 0.006623 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctA | 1 | 1 | B.1.9.4 | 0.006135 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | B.20 | 0.023256 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp12 | 758 | L758L | ctC | ctT | 1 | 1 | P.5 | 0.013699 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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