CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = L401L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12401L401LL4793LsynctTctC4024010.99751214641-14643
ORF1ab/nsp12401L401LL4793LsynctTctG40210.0024875614641-14643

Details of the mutation L401L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12401L401LctTctC401402All0.000077
ORF1ab/nsp12401L401LctTctG1402All0
ORF1ab/nsp12401L401LctTctC102102B.1.4021
ORF1ab/nsp12401L401LctTctC7575AY.1060.025117
ORF1ab/nsp12401L401LctTctC4444B.1.617.20.000166
ORF1ab/nsp12401L401LctTctC4242B.10.000385
ORF1ab/nsp12401L401LctTctC3737AY.1020.000981
ORF1ab/nsp12401L401LctTctC1212AY.430.000053
ORF1ab/nsp12401L401LctTctC1010B.1.4290.000235
ORF1ab/nsp12401L401LctTctC99B.1.1.70.000008
ORF1ab/nsp12401L401LctTctC88B.1.1.10.002614
ORF1ab/nsp12401L401LctTctC77AY.1200.00026
ORF1ab/nsp12401L401LctTctC66AY.40.000009
ORF1ab/nsp12401L401LctTctC55B.1.1110.005875
ORF1ab/nsp12401L401LctTctC44AY.1030.000025
ORF1ab/nsp12401L401LctTctC44AY.250.000024
ORF1ab/nsp12401L401LctTctC44AY.390.000099
ORF1ab/nsp12401L401LctTctC44AY.4.50.00043
ORF1ab/nsp12401L401LctTctC44AY.440.000024
ORF1ab/nsp12401L401LctTctC22AY.160.000759
ORF1ab/nsp12401L401LctTctC22B.1.1.1780.083333
ORF1ab/nsp12401L401LctTctC11AY.1130.000142
ORF1ab/nsp12401L401LctTctC11AY.1210.000135
ORF1ab/nsp12401L401LctTctC11AY.200.000039
ORF1ab/nsp12401L401LctTctC11AY.30.00001
ORF1ab/nsp12401L401LctTctC11AY.34.10.00051
ORF1ab/nsp12401L401LctTctC11AY.450.000122
ORF1ab/nsp12401L401LctTctC11AY.46.40.000165
ORF1ab/nsp12401L401LctTctC11AY.470.000031
ORF1ab/nsp12401L401LctTctC11AY.480.000465
ORF1ab/nsp12401L401LctTctC11AY.750.000056
ORF1ab/nsp12401L401LctTctC11AY.840.000437
ORF1ab/nsp12401L401LctTctC11AY.9.10.000084
ORF1ab/nsp12401L401LctTctC11AY.9.20.000037
ORF1ab/nsp12401L401LctTctC11B.1.10.000018
ORF1ab/nsp12401L401LctTctC11B.1.1.2140.000055
ORF1ab/nsp12401L401LctTctC11B.1.2430.00007
ORF1ab/nsp12401L401LctTctC11B.1.5950.000261
ORF1ab/nsp12401L401LctTctC11B.1.5960.000087
ORF1ab/nsp12401L401LctTctC11B.1.6090.000479
ORF1ab/nsp12401L401LctTctC11B.1.6210.000089
ORF1ab/nsp12401L401LctTctG11C.370.000116