CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = L302S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12302L302SL4694SnonsyntTgtCg2492460.98795214344-14346
ORF1ab/nsp12302L302SL4694SnonsyntTGtCA24920.0080321314344-14346
ORF1ab/nsp12302L302SL4694SnonsynTTGAGC24910.0040160614344-14346

Details of the mutation L302S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12302L302StTgtCg246249All0.000047
ORF1ab/nsp12302L302StTGtCA2249All0
ORF1ab/nsp12302L302STTGAGC1249All0
ORF1ab/nsp12302L302StTgtCg150150C.2.11
ORF1ab/nsp12302L302StTgtCg6262C.21
ORF1ab/nsp12302L302StTgtCg88B.1.1.10.002614
ORF1ab/nsp12302L302StTgtCg66B.10.000055
ORF1ab/nsp12302L302StTgtCg33AY.40.000005
ORF1ab/nsp12302L302StTgtCg33B.1.10.000054
ORF1ab/nsp12302L302StTgtCg23B.1.1.70.000002
ORF1ab/nsp12302L302STTGAGC13B.1.1.70.000001
ORF1ab/nsp12302L302StTGtCA220.111111
ORF1ab/nsp12302L302StTgtCg11AY.300.000396
ORF1ab/nsp12302L302StTgtCg11AY.4.20.000022
ORF1ab/nsp12302L302StTgtCg11AY.460.000104
ORF1ab/nsp12302L302StTgtCg11AY.470.000031
ORF1ab/nsp12302L302StTgtCg11AY.50.000021
ORF1ab/nsp12302L302StTgtCg11B.1.1.1640.005155
ORF1ab/nsp12302L302StTgtCg11B.1.1.280.000311
ORF1ab/nsp12302L302StTgtCg11B.1.2210.000071
ORF1ab/nsp12302L302StTgtCg11B.1.3510.00003
ORF1ab/nsp12302L302StTgtCg11B.1.438.10.000107
ORF1ab/nsp12302L302StTgtCg11B.1.5820.000491
ORF1ab/nsp12302L302StTgtCg11B.1.6230.000536