CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = L261L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12261L261LL4653LsynttAttG3362760.82142914221-14223
ORF1ab/nsp12261L261LL4653LsynTtaCta336580.17261914221-14223
ORF1ab/nsp12261L261LL4653LsynTtACtG33610.0029761914221-14223
ORF1ab/nsp12261L261LL4653LsynTtACtT33610.0029761914221-14223

Details of the mutation L261L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12261L261LttAttG276336All0.000053
ORF1ab/nsp12261L261LTtaCta58336All0.000011
ORF1ab/nsp12261L261LTtACtT1336All0
ORF1ab/nsp12261L261LTtACtG1336All0
ORF1ab/nsp12261L261LttAttG157172B.1.1.70.000141
ORF1ab/nsp12261L261LTtaCta15172B.1.1.70.000013
ORF1ab/nsp12261L261LttAttG3131B.1.438.10.003325
ORF1ab/nsp12261L261LTtaCta2323AY.60.000946
ORF1ab/nsp12261L261LttAttG2121AY.440.000128
ORF1ab/nsp12261L261LttAttG1215B.10.00011
ORF1ab/nsp12261L261LTtaCta215B.10.000018
ORF1ab/nsp12261L261LTtACtT115B.10.000009
ORF1ab/nsp12261L261LttAttG89AY.40.000012
ORF1ab/nsp12261L261LTtaCta19AY.40.000002
ORF1ab/nsp12261L261LttAttG99B.1.4290.000212
ORF1ab/nsp12261L261LttAttG57B.1.617.20.000019
ORF1ab/nsp12261L261LTtaCta27B.1.617.20.000008
ORF1ab/nsp12261L261LttAttG66AY.360.000889
ORF1ab/nsp12261L261LttAttG66B.1.1.2160.005343
ORF1ab/nsp12261L261LttAttG24AY.1030.000012
ORF1ab/nsp12261L261LTtaCta24AY.1030.000012
ORF1ab/nsp12261L261LttAttG130.055556
ORF1ab/nsp12261L261LTtaCta130.055556
ORF1ab/nsp12261L261LTtACtG130.055556
ORF1ab/nsp12261L261LttAttG12AY.4.50.000107
ORF1ab/nsp12261L261LTtaCta12AY.4.50.000107
ORF1ab/nsp12261L261LTtaCta22AY.50.000041
ORF1ab/nsp12261L261LttAttG12B.1.1.2220.000204
ORF1ab/nsp12261L261LTtaCta12B.1.1.2220.000204
ORF1ab/nsp12261L261LttAttG22B.1.5960.000174
ORF1ab/nsp12261L261LTtaCta11AY.1000.000046
ORF1ab/nsp12261L261LttAttG11AY.1020.000027
ORF1ab/nsp12261L261LttAttG11AY.230.00007
ORF1ab/nsp12261L261LTtaCta11AY.250.000006
ORF1ab/nsp12261L261LttAttG11AY.270.000065
ORF1ab/nsp12261L261LTtaCta11AY.350.000233
ORF1ab/nsp12261L261LTtaCta11AY.390.000025
ORF1ab/nsp12261L261LttAttG11AY.430.000004
ORF1ab/nsp12261L261LttAttG11AY.470.000031
ORF1ab/nsp12261L261LTtaCta11AY.690.000187
ORF1ab/nsp12261L261LttAttG11AY.9.20.000037
ORF1ab/nsp12261L261LttAttG11B.1.10.000018
ORF1ab/nsp12261L261LttAttG11B.1.1.2200.001859
ORF1ab/nsp12261L261LttAttG11B.1.1.2610.008621
ORF1ab/nsp12261L261LttAttG11B.1.1.280.000311
ORF1ab/nsp12261L261LttAttG11B.1.4590.004082
ORF1ab/nsp12261L261LTtaCta11B.1.5260.000024
ORF1ab/nsp12261L261LttAttG11B.1.6210.000089
ORF1ab/nsp12261L261LttAttG11B.1.6370.000073
ORF1ab/nsp12261L261LTtaCta11P.10.000016
ORF1ab/nsp12261L261LttAttG11P.1.170.000162
ORF1ab/nsp12261L261LTtaCta11P.20.000187