CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 91 | K91E | K4483E | nonsyn | Aag | Gag | 1894 | 1885 | 0.995248 | 13711-13713 |
ORF1ab/nsp12 | 91 | K91E | K4483E | nonsyn | AaG | GaA | 1894 | 9 | 0.00475185 | 13711-13713 |
Details of the mutation K91E within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1885 | 1894 | All | 0.000361 |
ORF1ab/nsp12 | 91 | K91E | AaG | GaA | 9 | 1894 | All | 0.000002 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 768 | 768 | AY.4.2.1 | 0.114422 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 223 | 223 | B.1.1.7 | 0.0002 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 113 | 113 | AY.4.2 | 0.002451 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 84 | 84 | AY.4 | 0.000131 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 69 | 69 | AY.39.1 | 0.002733 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 58 | 58 | B.1.617.2 | 0.000218 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 40 | 40 | AY.44 | 0.000243 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 38 | 38 | AY.103 | 0.000236 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 30 | 30 | AY.43 | 0.000133 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 28 | 28 | P.1 | 0.000441 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 25 | 25 | AY.25 | 0.00015 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 25 | 25 | B.1.637 | 0.001827 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 19 | 19 | B.1.1.486 | 0.029968 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 18 | 18 | B.1 | 0.000165 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 18 | 18 | C.35 | 0.013932 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 16 | 16 | B.1.177 | 0.000211 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 15 | 15 | B.1.351 | 0.000446 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 14 | 14 | AY.47 | 0.000435 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 14 | 14 | B.1.177.60 | 0.003058 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 13 | 13 | B.1.621 | 0.001151 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 12 | 12 | B.1.2 | 0.000106 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 12 | 12 | B.1.396 | 0.008469 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 10 | 10 | AY.100 | 0.00046 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 9 | 9 | AY.29 | 0.000142 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 9 | 9 | AY.3 | 0.00009 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 8 | 8 | AY.20 | 0.000311 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 8 | 8 | AY.39 | 0.000198 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 8 | 8 | C.37 | 0.000929 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp12 | 91 | K91E | AaG | GaA | 7 | 7 | B.1.427 | 0.000353 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 6 | 6 | AY.26 | 0.00017 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 6 | 6 | P.2 | 0.00112 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 5 | 5 | B.1.240 | 0.001078 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 5 | 5 | P.1.17 | 0.000809 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 4 | 4 | AY.113 | 0.00057 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 4 | 4 | AY.30 | 0.001583 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 3 | 3 | B.1.1.266 | 0.036585 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 3 | 3 | B.1.177.21 | 0.000229 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 3 | 3 | B.1.356 | 0.005181 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp12 | 91 | K91E | AaG | GaA | 2 | 2 | 0.111111 | |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 2 | 2 | AY.86 | 0.00166 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 2 | 2 | B.1.177.87 | 0.001456 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | A.7 | 0.055556 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | AY.115 | 0.005208 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | B.1.1.336 | 0.016667 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | B.1.277 | 0.02381 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | P.1.10.1 | 0.00813 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp12 | 91 | K91E | Aag | Gag | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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