CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : Mut = I837I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12837I837II5229IsynatCatT291428230.96877115949-15951
ORF1ab/nsp12837I837II5229IsynatCatA2914910.031228615949-15951

Details of the mutation I837I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12837I837IatCatT28232914All0.00054
ORF1ab/nsp12837I837IatCatA912914All0.000017
ORF1ab/nsp12837I837IatCatT520520B.1.20.004579
ORF1ab/nsp12837I837IatCatT394411B.1.1.70.000353
ORF1ab/nsp12837I837IatCatA17411B.1.1.70.000015
ORF1ab/nsp12837I837IatCatT263263B.1.4290.006188
ORF1ab/nsp12837I837IatCatT176186AY.4.20.003817
ORF1ab/nsp12837I837IatCatA10186AY.4.20.000217
ORF1ab/nsp12837I837IatCatT156159AY.40.000243
ORF1ab/nsp12837I837IatCatA3159AY.40.000005
ORF1ab/nsp12837I837IatCatT128128AY.250.00077
ORF1ab/nsp12837I837IatCatT8997AY.1030.000553
ORF1ab/nsp12837I837IatCatA897AY.1030.00005
ORF1ab/nsp12837I837IatCatT7885B.1.617.20.000294
ORF1ab/nsp12837I837IatCatA785B.1.617.20.000026
ORF1ab/nsp12837I837IatCatT6363B.1.1770.00083
ORF1ab/nsp12837I837IatCatT5757B.1.5870.108159
ORF1ab/nsp12837I837IatCatT5154B.10.000467
ORF1ab/nsp12837I837IatCatA354B.10.000027
ORF1ab/nsp12837I837IatCatT3541P.10.000551
ORF1ab/nsp12837I837IatCatA641P.10.000095
ORF1ab/nsp12837I837IatCatT3737P.40.140684
ORF1ab/nsp12837I837IatCatT3232B.1.1600.000998
ORF1ab/nsp12837I837IatCatT3031AY.440.000183
ORF1ab/nsp12837I837IatCatA131AY.440.000006
ORF1ab/nsp12837I837IatCatT2829AY.30.000278
ORF1ab/nsp12837I837IatCatA129AY.30.00001
ORF1ab/nsp12837I837IatCatT2929AY.750.001625
ORF1ab/nsp12837I837IatCatT2929B.1.6370.002119
ORF1ab/nsp12837I837IatCatT2727AD.20.005912
ORF1ab/nsp12837I837IatCatT2525B.1.1941
ORF1ab/nsp12837I837IatCatT2124AY.430.000093
ORF1ab/nsp12837I837IatCatA324AY.430.000013
ORF1ab/nsp12837I837IatCatT2424B.1.1.2140.001331
ORF1ab/nsp12837I837IatCatT2222AY.450.002677
ORF1ab/nsp12837I837IatCatT2020B.1.1.1890.030257
ORF1ab/nsp12837I837IatCatT2020B.1.1.5190.000794
ORF1ab/nsp12837I837IatCatT1820B.1.3510.000535
ORF1ab/nsp12837I837IatCatA220B.1.3510.000059
ORF1ab/nsp12837I837IatCatT1818B.1.1.280.005602
ORF1ab/nsp12837I837IatCatT1717B.1.258.170.001768
ORF1ab/nsp12837I837IatCatT1717B.1.4000.007293
ORF1ab/nsp12837I837IatCatT1316B.1.10.000236
ORF1ab/nsp12837I837IatCatA316B.1.10.000054
ORF1ab/nsp12837I837IatCatT1515AY.1160.004302
ORF1ab/nsp12837I837IatCatT1213AY.1000.000552
ORF1ab/nsp12837I837IatCatA113AY.1000.000046
ORF1ab/nsp12837I837IatCatT1111AY.5.40.003044
ORF1ab/nsp12837I837IatCatT1010AY.140.00088
ORF1ab/nsp12837I837IatCatT1010AY.200.000389
ORF1ab/nsp12837I837IatCatT1010AY.390.000247
ORF1ab/nsp12837I837IatCatT1010B.1.1.3330.010764
ORF1ab/nsp12837I837IatCatT99AY.230.000628
ORF1ab/nsp12837I837IatCatT99AY.420.000362
ORF1ab/nsp12837I837IatCatT88AY.130.001288
ORF1ab/nsp12837I837IatCatT88AY.290.000126
ORF1ab/nsp12837I837IatCatT88B.1.5960.000697
ORF1ab/nsp12837I837IatCatT88W.20.038647
ORF1ab/nsp12837I837IatCatT47AY.1020.000106
ORF1ab/nsp12837I837IatCatA37AY.1020.00008
ORF1ab/nsp12837I837IatCatT77AY.470.000218
ORF1ab/nsp12837I837IatCatT47AY.98.10.000194
ORF1ab/nsp12837I837IatCatA37AY.98.10.000145
ORF1ab/nsp12837I837IatCatT77B.1.1.2170.025455
ORF1ab/nsp12837I837IatCatT77B.1.5170.002989
ORF1ab/nsp12837I837IatCatT77B.1.5740.015054
ORF1ab/nsp12837I837IatCatT67B.1.6210.000531
ORF1ab/nsp12837I837IatCatA17B.1.6210.000089
ORF1ab/nsp12837I837IatCatT66A.23.10.004225
ORF1ab/nsp12837I837IatCatT66AY.1110.001099
ORF1ab/nsp12837I837IatCatT66B.1.160.80.007732
ORF1ab/nsp12837I837IatCatT55AY.3.10.000426
ORF1ab/nsp12837I837IatCatT55AY.740.000578
ORF1ab/nsp12837I837IatCatT45AY.9.20.000147
ORF1ab/nsp12837I837IatCatA15AY.9.20.000037
ORF1ab/nsp12837I837IatCatT55AY.980.000395
ORF1ab/nsp12837I837IatCatT55B.1.617.10.000645
ORF1ab/nsp12837I837IatCatT55C.140.021645
ORF1ab/nsp12837I837IatCatT55C.370.00058
ORF1ab/nsp12837I837IatCatT55D.20.000375
ORF1ab/nsp12837I837IatCatT44AY.240.001724
ORF1ab/nsp12837I837IatCatT44AY.260.000113
ORF1ab/nsp12837I837IatCatT44AY.50.000083
ORF1ab/nsp12837I837IatCatT44AY.90.00027
ORF1ab/nsp12837I837IatCatT44AY.99.20.000369
ORF1ab/nsp12837I837IatCatT34B0.000383
ORF1ab/nsp12837I837IatCatA14B0.000128
ORF1ab/nsp12837I837IatCatT44B.1.2210.000284
ORF1ab/nsp12837I837IatCatT34B.1.2580.0002
ORF1ab/nsp12837I837IatCatA14B.1.2580.000067
ORF1ab/nsp12837I837IatCatT44B.1.466.20.001565
ORF1ab/nsp12837I837IatCatT44B.1.5260.000094
ORF1ab/nsp12837I837IatCatT44C.360.003643
ORF1ab/nsp12837I837IatCatA34P.1.140.000143
ORF1ab/nsp12837I837IatCatT14P.1.140.000048
ORF1ab/nsp12837I837IatCatT23A0.000774
ORF1ab/nsp12837I837IatCatA13A0.000387
ORF1ab/nsp12837I837IatCatT33AY.120.2.10.001495
ORF1ab/nsp12837I837IatCatT33AY.340.000291
ORF1ab/nsp12837I837IatCatT33AY.99.10.004658
ORF1ab/nsp12837I837IatCatT33B.1.2340.000396
ORF1ab/nsp12837I837IatCatT33B.1.5510.003871
ORF1ab/nsp12837I837IatCatT33C.36.30.001702
ORF1ab/nsp12837I837IatCatT22A.2.50.000998
ORF1ab/nsp12837I837IatCatT22AY.1210.000271
ORF1ab/nsp12837I837IatCatT22AY.330.000134
ORF1ab/nsp12837I837IatCatT22AY.34.10.00102
ORF1ab/nsp12837I837IatCatT22AY.360.000296
ORF1ab/nsp12837I837IatCatT22AY.39.10.000079
ORF1ab/nsp12837I837IatCatT22AY.570.001312
ORF1ab/nsp12837I837IatCatT12AY.840.000437
ORF1ab/nsp12837I837IatCatA12AY.840.000437
ORF1ab/nsp12837I837IatCatT22B.1.1.2280.006098
ORF1ab/nsp12837I837IatCatA22B.1.1.2910.001485
ORF1ab/nsp12837I837IatCatT22B.1.1.3260.003521
ORF1ab/nsp12837I837IatCatT22B.1.1.330.000842
ORF1ab/nsp12837I837IatCatT22B.1.1.470.010695
ORF1ab/nsp12837I837IatCatT22B.1.1470.001512
ORF1ab/nsp12837I837IatCatT22B.1.177.860.000367
ORF1ab/nsp12837I837IatCatT22B.1.2430.000139
ORF1ab/nsp12837I837IatCatT22B.1.2790.001027
ORF1ab/nsp12837I837IatCatT22B.1.351.20.000605
ORF1ab/nsp12837I837IatCatT22B.1.36.170.000988
ORF1ab/nsp12837I837IatCatT22B.1.3610.002577
ORF1ab/nsp12837I837IatCatT22B.1.3960.001411
ORF1ab/nsp12837I837IatCatT22B.1.4270.000101
ORF1ab/nsp12837I837IatCatA22B.1.6280.000705
ORF1ab/nsp12837I837IatCatT11A.210.00277
ORF1ab/nsp12837I837IatCatT11AY.1010.00049
ORF1ab/nsp12837I837IatCatT11AY.1060.000335
ORF1ab/nsp12837I837IatCatT11AY.1070.000466
ORF1ab/nsp12837I837IatCatA11AY.1180.000063
ORF1ab/nsp12837I837IatCatT11AY.1190.000035
ORF1ab/nsp12837I837IatCatT11AY.1200.000037
ORF1ab/nsp12837I837IatCatT11AY.16.10.00047
ORF1ab/nsp12837I837IatCatT11AY.270.000065
ORF1ab/nsp12837I837IatCatT11AY.350.000233
ORF1ab/nsp12837I837IatCatT11AY.380.000499
ORF1ab/nsp12837I837IatCatT11AY.400.000964
ORF1ab/nsp12837I837IatCatT11AY.46.20.000635
ORF1ab/nsp12837I837IatCatA11AY.520.000814
ORF1ab/nsp12837I837IatCatT11AY.590.00053
ORF1ab/nsp12837I837IatCatT11AY.60.000041
ORF1ab/nsp12837I837IatCatT11AY.610.000105
ORF1ab/nsp12837I837IatCatT11AY.630.000387
ORF1ab/nsp12837I837IatCatT11AY.640.000595
ORF1ab/nsp12837I837IatCatT11AY.650.000533
ORF1ab/nsp12837I837IatCatT11AY.710.000475
ORF1ab/nsp12837I837IatCatT11AY.890.004902
ORF1ab/nsp12837I837IatCatT11AY.9.10.000084
ORF1ab/nsp12837I837IatCatA11AY.920.000287
ORF1ab/nsp12837I837IatCatT11AY.930.000273
ORF1ab/nsp12837I837IatCatT11B.1.1.1450.037037
ORF1ab/nsp12837I837IatCatT11B.1.1.2160.00089
ORF1ab/nsp12837I837IatCatT11B.1.1.2220.000204
ORF1ab/nsp12837I837IatCatT11B.1.1.2740.005051
ORF1ab/nsp12837I837IatCatT11B.1.1.2940.001266
ORF1ab/nsp12837I837IatCatT11B.1.1.3760.005952
ORF1ab/nsp12837I837IatCatT11B.1.1.390.00051
ORF1ab/nsp12837I837IatCatT11B.1.1.4670.019231
ORF1ab/nsp12837I837IatCatT11B.1.1040.00369
ORF1ab/nsp12837I837IatCatT11B.1.177.160.000664
ORF1ab/nsp12837I837IatCatT11B.1.177.210.000076
ORF1ab/nsp12837I837IatCatT11B.1.177.40.000211
ORF1ab/nsp12837I837IatCatT11B.1.177.430.001477
ORF1ab/nsp12837I837IatCatT11B.1.177.560.000668
ORF1ab/nsp12837I837IatCatT11B.1.177.730.000566
ORF1ab/nsp12837I837IatCatT11B.1.177.770.000726
ORF1ab/nsp12837I837IatCatT11B.1.1820.007246
ORF1ab/nsp12837I837IatCatT11B.1.214.20.0006
ORF1ab/nsp12837I837IatCatT11B.1.2380.014925
ORF1ab/nsp12837I837IatCatT11B.1.258.160.001637
ORF1ab/nsp12837I837IatCatA11B.1.3010.005917
ORF1ab/nsp12837I837IatCatT11B.1.3560.001727
ORF1ab/nsp12837I837IatCatT11B.1.360.000146
ORF1ab/nsp12837I837IatCatT11B.1.36.290.000517
ORF1ab/nsp12837I837IatCatT11B.1.3930.028571
ORF1ab/nsp12837I837IatCatT11B.1.4220.000812
ORF1ab/nsp12837I837IatCatT11B.1.4410.009615
ORF1ab/nsp12837I837IatCatT11B.1.5850.027778
ORF1ab/nsp12837I837IatCatT11B.1.5950.000261
ORF1ab/nsp12837I837IatCatA11B.1.619.10.000641
ORF1ab/nsp12837I837IatCatA11B.1.6230.000536
ORF1ab/nsp12837I837IatCatA11B.340.013699
ORF1ab/nsp12837I837IatCatT11B.400.000364
ORF1ab/nsp12837I837IatCatT11P.1.120.000484
ORF1ab/nsp12837I837IatCatT11P.1.150.000232
ORF1ab/nsp12837I837IatCatT11Q.10.000126
ORF1ab/nsp12837I837IatCatT11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.